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  1. Article ; Online: Ferrets as Models for Viral Respiratory Disease.

    Smith, Rachel E / Choudhary, Shambhunath / Ramirez, Julita A

    Comparative medicine

    2023  Volume 73, Issue 3, Page(s) 187–193

    Abstract: Domestic ferrets ( ...

    Abstract Domestic ferrets (
    MeSH term(s) Animals ; COVID-19 ; Ferrets ; Reproducibility of Results
    Language English
    Publishing date 2023-05-31
    Publishing country United States
    Document type Review ; Journal Article
    ZDB-ID 2006425-1
    ISSN 2769-819X ; 0023-6764 ; 1532-0820
    ISSN (online) 2769-819X
    ISSN 0023-6764 ; 1532-0820
    DOI 10.30802/AALAS-CM-22-000064
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Flexural Capacity of Concrete Beams with Basalt Fiber-Reinforced Polymer Bars and Stirrups.

    Krassowska, Julita / Piña Ramírez, Carolina

    Materials (Basel, Switzerland)

    2022  Volume 15, Issue 22

    Abstract: The flexural properties of six 120 × 300 × 4500 mm concrete beams reinforced with bars made from basalt fiber-reinforced polymer (BFRP) basalt fibers and concrete stirrups were investigated. The beams contained different concrete compositions (with or ... ...

    Abstract The flexural properties of six 120 × 300 × 4500 mm concrete beams reinforced with bars made from basalt fiber-reinforced polymer (BFRP) basalt fibers and concrete stirrups were investigated. The beams contained different concrete compositions (with or without basalt fibers). Steel and BFRP bars were used as longitudinal and shear reinforcement. As expected, all the beams failed by the crushing of the concrete in the top compression fibers because of using BFRP bars. Beams with BFRP bars should be designed to fail by concrete crushing because it is safer than a brittle failure of the bars. The beams with composite reinforcement were characterized by the greatest number of cracks with the largest crack width. The use of basalt fibers resulted in slightly reduced cracks in beams. The most significant deflections were recorded for the beams with BFRC composite reinforcement, the smallest for FRC beams. Adding basalt fibers to the concrete resulted in slightly reduced deflection of FRC beams compared to RC beams and significantly reduced deflection compared to BFRC beams. Results showed that introducing basalt fibers to the concrete increased curvature ductility of these beams. A theoretical analysis of flexural capacity showed that the ACI standard design is more similar to experimental values (0.87). A more restrictive standard, as it turns out, is the
    Language English
    Publishing date 2022-11-21
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2487261-1
    ISSN 1996-1944
    ISSN 1996-1944
    DOI 10.3390/ma15228270
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Using Filter Media and Soiled Bedding in Disposable Individually Ventilated Cages as a Refinement to Specific Pathogen-free Mouse Health Monitoring Programs.

    Winn, Caroline B / Rogers, Renee N / Keenan, Rose A / Gerwin, Philip M / Matthews, Kristin A / Ramirez, Julita A / Bennett, Terese E / Perkins, Cheryl L / Henderson, Kenneth S

    Journal of the American Association for Laboratory Animal Science : JAALAS

    2022  Volume 61, Issue 4, Page(s) 361–369

    Abstract: Molecular-based methods have shown potential for improving pathogen detection and reducing animal use. While increasing evidence supports rodent-free environmental health PCR pathogen detection, limited information is available regarding efficacy for ... ...

    Abstract Molecular-based methods have shown potential for improving pathogen detection and reducing animal use. While increasing evidence supports rodent-free environmental health PCR pathogen detection, limited information is available regarding efficacy for disposable individually ventilated caging systems. In such systems, testing of plenum exhaust air dust is ineffective, and the use of collection media is optimal. We performed a series of studies to compare PCR infectious agent detection with dust collected on media placed in a mouse-free soiled bedding cage, the cage exhaust filter of an occupied sentinel cage, and direct sampling from colony and sentinel mice with traditional soiled bedding mouse sentinels. We hypothesized that after a 3-mo period, testing of filter media agitated in a soiled bedding cage would be equal to or more sensitive than more traditional methods. Agitated media detected Astrovirus-1, segmented filamentous bacteria and
    MeSH term(s) Animals ; Bedding and Linens/veterinary ; Dust/analysis ; Housing, Animal ; Mice ; Rodent Diseases/diagnosis ; Soil
    Chemical Substances Dust ; Soil
    Language English
    Publishing date 2022-06-24
    Publishing country United States
    Document type Journal Article
    ISSN 2769-6677
    ISSN (online) 2769-6677
    DOI 10.30802/AALAS-JAALAS-22-000013
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Control of B lymphocyte development and functions by the mTOR signaling pathways.

    Iwata, Terri N / Ramírez-Komo, Julita A / Park, Heon / Iritani, Brian M

    Cytokine & growth factor reviews

    2017  Volume 35, Page(s) 47–62

    Abstract: Mechanistic target of rapamycin (mTOR) is a serine/threonine kinase originally discovered as the molecular target of the immunosuppressant rapamycin. mTOR forms two compositionally and functionally distinct complexes, mTORC1 and mTORC2, which are crucial ...

    Abstract Mechanistic target of rapamycin (mTOR) is a serine/threonine kinase originally discovered as the molecular target of the immunosuppressant rapamycin. mTOR forms two compositionally and functionally distinct complexes, mTORC1 and mTORC2, which are crucial for coordinating nutrient, energy, oxygen, and growth factor availability with cellular growth, proliferation, and survival. Recent studies have identified critical, non-redundant roles for mTORC1 and mTORC2 in controlling B cell development, differentiation, and functions, and have highlighted emerging roles of the Folliculin-Fnip protein complex in regulating mTOR and B cell development. In this review, we summarize the basic mechanisms of mTOR signaling; describe what is known about the roles of mTORC1, mTORC2, and the Folliculin/Fnip1 pathway in B cell development and functions; and briefly outline current clinical approaches for targeting mTOR in B cell neoplasms. We conclude by highlighting a few salient questions and future perspectives regarding mTOR in B lineage cells.
    MeSH term(s) Animals ; B-Lymphocytes/immunology ; B-Lymphocytes/metabolism ; Carrier Proteins/metabolism ; Cell Proliferation ; Estrone/metabolism ; Humans ; Mechanistic Target of Rapamycin Complex 1/metabolism ; Mechanistic Target of Rapamycin Complex 2/metabolism ; Mice ; Phosphorylation ; Signal Transduction ; TOR Serine-Threonine Kinases/metabolism
    Chemical Substances Carrier Proteins ; FNIP1 protein, mouse ; Estrone (2DI9HA706A) ; TOR Serine-Threonine Kinases (EC 2.7.1.1) ; Mechanistic Target of Rapamycin Complex 1 (EC 2.7.11.1) ; Mechanistic Target of Rapamycin Complex 2 (EC 2.7.11.1)
    Language English
    Publishing date 2017-05-22
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 1330534-7
    ISSN 1879-0305 ; 1359-6101
    ISSN (online) 1879-0305
    ISSN 1359-6101
    DOI 10.1016/j.cytogfr.2017.04.005
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: The Mi-2/NuRD complex: a critical epigenetic regulator of hematopoietic development, differentiation and cancer.

    Ramírez, Julita / Hagman, James

    Epigenetics

    2009  Volume 4, Issue 8, Page(s) 532–536

    Abstract: The Mi-2/NuRD chromatin remodeling complex links multiple transcriptional regulatory processes including histone deacetylation, histone demethylation, nucleosome mobilization and recruitment of other regulatory proteins. In some contexts, Mi-2/NuRD ... ...

    Abstract The Mi-2/NuRD chromatin remodeling complex links multiple transcriptional regulatory processes including histone deacetylation, histone demethylation, nucleosome mobilization and recruitment of other regulatory proteins. In some contexts, Mi-2/NuRD functions as a barrier to transcriptional activation by working in opposition to other chromatin remodelers such as SWI/SNF. Alternatively, the Mi-2beta ATPase subunit of Mi-2/NuRD can promote transcription. Together, these gatekeeper functions of Mi-2/NuRD influence cell fate decisions by modulating transcriptional activity. Recent studies have shown the importance of Mi-2/NuRD both in maintaining hematopoietic stem cell (HSC) pools and in normal lineage progression. Furthermore, components of Mi-2/NuRD complexes are modular co-repressors/co-activators comprising multiple protein subunits that have been linked directly to oncogenesis and have potential as therapeutic targets for cancer treatment. Mi-2/NuRD's essential functions in metazoan cell fates and activities underscore its importance as a focal point of epigenetic research.
    MeSH term(s) Cell Differentiation ; Epigenesis, Genetic ; Hematopoietic Stem Cells/cytology ; Mi-2 Nucleosome Remodeling and Deacetylase Complex/genetics ; Mi-2 Nucleosome Remodeling and Deacetylase Complex/metabolism ; Models, Biological ; Neoplasms/genetics ; Neoplasms/metabolism
    Chemical Substances Mi-2 Nucleosome Remodeling and Deacetylase Complex (EC 3.5.1.98)
    Language English
    Publishing date 2009-11-16
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Review
    ISSN 1559-2308
    ISSN (online) 1559-2308
    DOI 10.4161/epi.4.8.10108
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: CT-based pathological lung volume and adverse outcomes of patients with Coronavirus Disease 2019 (COVID-19)

    Leonardo M. Morales-Jaramillo / David Timaran-Montenegro / Yohana Mateo-Camacho / Christian Torres-Ramírez / Karla Fuentes-Badillo / Valeria Morales-Domínguez / Gerardo Punzo-Alcaraz, / Edgar Tapia-Rangel / Gustavo Feria-Arroyo / Lina Parra-Guerrero / Pedro Sáenz-Castillo / Ana Hernández-Rojas / Manuel Falla-Trujillo / Daniel Obando-Bravo / Giovanni Contla-Trejo / Katherine Jácome-Portilla / Alberto Chávez-Sastré / Jovani Govea-Palma / Santiago Carrillo-Álvarez /
    Julita Orozco-Vázquez / Dulce Bonifacio-Delgadillo

    Anales de Radiología, México, Vol 22, Iss

    2023  Volume 1

    Abstract: Objective: To assess the association between CT-based percentage of pathological lung opacities volume (%PLOV) and the occurrence of adverse outcomes of patients with COVID-19. Methods: An observational, longitudinal, single-center study was performed ... ...

    Abstract Objective: To assess the association between CT-based percentage of pathological lung opacities volume (%PLOV) and the occurrence of adverse outcomes of patients with COVID-19. Methods: An observational, longitudinal, single-center study was performed including patients with COVID-19. CT-based lung segmentation was performed to calculate %PLOV. The primary endpoint was the occurrence of adverse lung event (ALE), defined as ICU admission, the use of mechanical ventilation, or death. Mann-Whitney U test was performed for univariate analysis. Logistic regression analysis was performed to determine independent predictors of critical illness. Results: 138 patients (84 men [61%]) with a mean age of 47.3 years were enrolled. Median %PLOV was 28.64% (interquartile range [IQR], 6.33-47.22%). ALE occurred in 52 patients (38%) with an overall mortality rate of 21% (29 patients). Multivariate analysis demonstrated that %PLOV was an independent predictor of ALE with an Odds ratio of 1.049 (95% confidence interval [CI], 1.014-1.085) (p < 0.01). Furthermore, a %PLOV of 64% demonstrated a 25.5-fold increased risk of ALE with a sensitivity and specificity higher than 75% (p < 0.01). Conclusion: The quantitative evaluation of chest CT impacts the determination of severity of COVID-19 pneumonia on admission. %PLOV was the strongest predictor for the development of ALE in hospitalized patients.
    Keywords CT volumetry. COVID 19. Coronavirus. Adverse outcomes ; Medical physics. Medical radiology. Nuclear medicine ; R895-920
    Subject code 616 ; 610
    Language English
    Publishing date 2023-01-01T00:00:00Z
    Publisher Permanyer
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  7. Article ; Online: CT-Based Hepatic Residual Volume and Predictors of Outcomes of Patients with Hepatocellular Carcinoma Unsuitable for Surgical Therapy Undergoing Transarterial Chemoembolization.

    Timaran Montenegro, David E / Torres Ramirez, Christian A / Mateo C, Yohana S / Govea Palma, Jovanni / Quiñones, Julian C / Orozco Vazquez, Julita S

    Academic radiology

    2019  Volume 27, Issue 6, Page(s) 807–814

    Abstract: Rationale and objectives: To assess the association between baseline CT-based volumetric parameters and biochemical hepatic evaluations, such as, Child-Pugh, MELD score, and modified MELD-Na score, on the prediction of outcomes of patients with HCC ... ...

    Abstract Rationale and objectives: To assess the association between baseline CT-based volumetric parameters and biochemical hepatic evaluations, such as, Child-Pugh, MELD score, and modified MELD-Na score, on the prediction of outcomes of patients with HCC undergoing transarterial chemoembolization (TACE).
    Materials and methods: A retrospective of a prospectively maintained database, single arm, and single center study was performed including 41 patients with diagnosis of hepatocellular carcinoma treated with TACE. Study endpoints included liver dysfunction (new events of ascites, encephalopathy, and/or death) and overall survival rate. Multi-phase CT-based volumetric analysis was performed to calculate total liver volume and tumor volume using portal and late arterial phases, respectively. Residual volume was calculated subtracting the tumor volume minus the total liver volume. Child-Pugh, MELD score, and MELD-Na score were measured during the baseline evaluation.
    Results: At a median follow-up time of 8 months (IQR, 5-14), 16 patients (39%) were diagnosed with hepatic dysfunction. In patients with hepatic dysfunction, the median residual hepatic volume was 1002.1 cc (IQR, 633-1077.1 cc) compared to patients with normal liver function post-TACE with a median residual volume of 1233 cc (IQR, 1018.7-1437.6 cc) (p = 0.02). Survival analysis demonstrated an overall survival rate of 95%, 90%, 85% at 30 days, 12 months, and 24 months, respectively. The overall survival rate in patients with Child-Pugh A was 100%, 97%, and 97% at 6, 12, and 24 months, respectively; compared to patients with Child Pugh B with an overall survival of rate of 86%, 78%, and 78% at 6, 12, and 24 months, respectively (p = 0.07). Median baseline MELD-Na score was higher in patients that died during the study period compared to patients that survived (6.7 [IQR, 5-14.2] versus 4.1 [IQR, 2.14-6.85]) (p = 0.09).
    Conclusion: Low baseline CT-based residual volume is associated with the occurrence of hepatic dysfunction at a median time of 8 months. Baseline Child-Pugh A patients were found to have higher survival rate than Child-Pugh B. Interestingly, higher baseline MELD-Na score was associated with mortality.
    MeSH term(s) Carcinoma, Hepatocellular/diagnostic imaging ; Carcinoma, Hepatocellular/therapy ; Chemoembolization, Therapeutic ; Child ; Humans ; Liver Neoplasms/diagnostic imaging ; Liver Neoplasms/therapy ; Residual Volume ; Retrospective Studies ; Tomography, X-Ray Computed ; Treatment Outcome
    Language English
    Publishing date 2019-09-28
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1355509-1
    ISSN 1878-4046 ; 1076-6332
    ISSN (online) 1878-4046
    ISSN 1076-6332
    DOI 10.1016/j.acra.2019.09.003
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article: B lymphocyte lineage specification, commitment and epigenetic control of transcription by early B cell factor 1.

    Hagman, James / Ramírez, Julita / Lukin, Kara

    Current topics in microbiology and immunology

    2011  Volume 356, Page(s) 17–38

    Abstract: Early B cell factor 1 (EBF1) is a transcription factor that is critical for both B lymphopoiesis and B cell function. EBF1 is a requisite component of the B lymphocyte transcriptional network and is essential for B lineage specification. Recent studies ... ...

    Abstract Early B cell factor 1 (EBF1) is a transcription factor that is critical for both B lymphopoiesis and B cell function. EBF1 is a requisite component of the B lymphocyte transcriptional network and is essential for B lineage specification. Recent studies revealed roles for EBF1 in B cell commitment. EBF1 binds its target genes via a DNA-binding domain including a unique 'zinc knuckle', which mediates a novel mode of DNA recognition. Chromatin immunoprecipitation of EBF1 in pro-B cells defined hundreds of new, as well as previously identified, target genes. Notably, expression of the pre-B cell receptor (pre-BCR), BCR and PI3K/Akt/mTOR signaling pathways is controlled by EBF1. In this review, we highlight these current developments and explore how EBF1 functions as a tissue-specific regulator of chromatin structure at B cell-specific genes.
    MeSH term(s) Animals ; B-Lymphocytes/cytology ; B-Lymphocytes/metabolism ; Cell Lineage ; Epigenesis, Genetic ; Gene Expression Regulation ; Humans ; Lymphopoiesis ; Transcription Factors/chemistry ; Transcription Factors/genetics ; Transcription Factors/metabolism
    Chemical Substances Transcription Factors
    Language English
    Publishing date 2011-07-08
    Publishing country Germany
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Review
    ISSN 0070-217X
    ISSN 0070-217X
    DOI 10.1007/82_2011_139
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Folliculin Interacting Protein 1 Maintains Metabolic Homeostasis during B Cell Development by Modulating AMPK, mTORC1, and TFE3.

    Ramírez, Julita A / Iwata, Terri / Park, Heon / Tsang, Mark / Kang, Janella / Cui, Katy / Kwong, Winnie / James, Richard G / Baba, Masaya / Schmidt, Laura S / Iritani, Brian M

    Journal of immunology (Baltimore, Md. : 1950)

    2019  Volume 203, Issue 11, Page(s) 2899–2908

    Abstract: Folliculin interacting protein 1 (Fnip1) is a cytoplasmic protein originally discovered through its interaction with the master metabolic sensor 5' AMP-activated protein kinase (AMPK) and Folliculin, a protein mutated in individuals with Birt-Hogg-Dubé ... ...

    Abstract Folliculin interacting protein 1 (Fnip1) is a cytoplasmic protein originally discovered through its interaction with the master metabolic sensor 5' AMP-activated protein kinase (AMPK) and Folliculin, a protein mutated in individuals with Birt-Hogg-Dubé Syndrome. In response to low energy, AMPK stimulates catabolic pathways such as autophagy to enhance energy production while inhibiting anabolic pathways regulated by the mechanistic target of rapamycin complex 1 (mTORC1). We previously found that constitutive disruption of
    MeSH term(s) AMP-Activated Protein Kinases/metabolism ; Animals ; B-Lymphocytes/metabolism ; Basic Helix-Loop-Helix Leucine Zipper Transcription Factors/metabolism ; Carrier Proteins/metabolism ; Homeostasis ; Mechanistic Target of Rapamycin Complex 1/metabolism ; Mice ; Mice, Inbred C57BL ; Mice, Knockout
    Chemical Substances Basic Helix-Loop-Helix Leucine Zipper Transcription Factors ; Carrier Proteins ; FNIP1 protein, mouse ; Tcfe3 protein, mouse (136896-33-8) ; Mechanistic Target of Rapamycin Complex 1 (EC 2.7.11.1) ; AMP-Activated Protein Kinases (EC 2.7.11.31)
    Language English
    Publishing date 2019-11-01
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 3056-9
    ISSN 1550-6606 ; 0022-1767 ; 1048-3233 ; 1047-7381
    ISSN (online) 1550-6606
    ISSN 0022-1767 ; 1048-3233 ; 1047-7381
    DOI 10.4049/jimmunol.1900395
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article: Molecular characterization of HTLV-1 Tax interaction with the KIX domain of CBP/p300.

    Ramírez, Julita A / Nyborg, Jennifer K

    Journal of molecular biology

    2007  Volume 372, Issue 4, Page(s) 958–969

    Abstract: The viral oncoprotein Tax mediates transcriptional activation of human T-cell leukemia virus type 1 (HTLV-1). Both Tax and the cellular transcription factor CREB bind to viral cyclic AMP response elements (vCREs) located in the viral promoter. Tax and ... ...

    Abstract The viral oncoprotein Tax mediates transcriptional activation of human T-cell leukemia virus type 1 (HTLV-1). Both Tax and the cellular transcription factor CREB bind to viral cyclic AMP response elements (vCREs) located in the viral promoter. Tax and serine 133 phosphorylated CREB (pCREB) bound to the HTLV-1 promoter facilitate viral transcription via the recruitment of the large cellular coactivators CBP/p300. While the interaction between the phosphorylated kinase inducible domain (pKID) of pCREB and the KIX domain of CBP/p300 has been well characterized, the molecular interactions between KIX, full-length Tax, and pCREB have not been examined. Here we biochemically characterized the interaction between Tax and KIX in a physiologically relevant complex containing pCREB and vCRE DNA. Our data show that Tax and pCREB simultaneously and independently bind two distinct surfaces on the KIX domain: Tax binds KIX at the previously characterized mixed-lineage leukemia (MLL) protein interaction surface while pCREB binds KIX at the pKID-KIX interface. These results provide evidence for a model in which Tax and pCREB bind distinct surfaces of KIX for effective CBP/p300 recruitment to the HTLV-1 promoter. We also show that MLL competes with Tax for KIX binding, suggesting a novel mechanism of Tax oncogenesis in which normal MLL function is disrupted by Tax.
    MeSH term(s) Cyclic AMP Response Element-Binding Protein/genetics ; Cyclic AMP Response Element-Binding Protein/metabolism ; Gene Products, tax/chemistry ; Gene Products, tax/genetics ; Gene Products, tax/metabolism ; Histone-Lysine N-Methyltransferase ; Human T-lymphotropic virus 1/metabolism ; Humans ; Mutation ; Myeloid-Lymphoid Leukemia Protein/genetics ; Myeloid-Lymphoid Leukemia Protein/metabolism ; Protein Structure, Secondary ; Protein Structure, Tertiary ; p300-CBP Transcription Factors/chemistry ; p300-CBP Transcription Factors/genetics ; p300-CBP Transcription Factors/metabolism
    Chemical Substances Cyclic AMP Response Element-Binding Protein ; Gene Products, tax ; KMT2A protein, human ; Myeloid-Lymphoid Leukemia Protein (149025-06-9) ; Histone-Lysine N-Methyltransferase (EC 2.1.1.43) ; p300-CBP Transcription Factors (EC 2.3.1.48)
    Language English
    Publishing date 2007-06-29
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 80229-3
    ISSN 1089-8638 ; 0022-2836
    ISSN (online) 1089-8638
    ISSN 0022-2836
    DOI 10.1016/j.jmb.2007.06.062
    Database MEDical Literature Analysis and Retrieval System OnLINE

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