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Article: Heteroscedastic Reaction Norm Models Improve the Assessment of Genotype by Environment Interaction for Growth, Reproductive, and Visual Score Traits in Nellore Cattle.

Carvalho Filho, Ivan / Silva, Delvan A / Teixeira, Caio S / Silva, Thales L / Mota, Lucio F M / Albuquerque, Lucia G / Carvalheiro, Roberto

Animals : an open access journal from MDPI

2022 Volume 12, Issue 19

Abstract: The assessment of the presence of genotype by environment interaction (GxE) in beef cattle is very important in tropical countries with diverse climatic conditions and production systems. The present study aimed to assess the presence of GxE by using ... ...

Abstract	The assessment of the presence of genotype by environment interaction (GxE) in beef cattle is very important in tropical countries with diverse climatic conditions and production systems. The present study aimed to assess the presence of GxE by using different reaction norm models for eleven traits related to growth, reproduction, and visual score in Nellore cattle. We studied five reaction norm models (RNM), fitting a linear model considering homoscedastic residual variance (RNM_homo), and four models considering heteroskedasticity, being linear (RNM_hete), quadratic (RNM_quad), linear spline (RNM_l-l), and quadratic spline (RNM_q-q). There was the presence of GxE for age at first calving (AFC), scrotal circumference (SC), weaning to yearling weight gain (WYG), and yearling weight (YW). The best models were RNM_l-l for YW and RNM_q-q for AFC, SC, and WYG. The heritability estimates for RNM_l-l ranged from 0.07 to 0.20, 0.42 to 0.61, 0.24 to 0.42, and 0.47 to 0.63 for AFC, SC, WYG, and YW, respectively. The heteroskedasticity in reaction norm models improves the assessment of the presence of GxE for YW, WYG, AFC, and SC. Additionally, the trajectories of reaction norms for these traits seem to be affected by a non-linear component, and selecting robust animals for these traits is an alternative to increase production and reduce environmental sensitivity.
Language	English
Publishing date	2022-09-29
Publishing country	Switzerland
Document type	Journal Article
ZDB-ID	2606558-7
ISSN	2076-2615
ISSN	2076-2615
DOI	10.3390/ani12192613
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Article: Trypanosoma cruzi

Ferreira, Glaucio Monteiro / Kronenberger, Thales / Maltarollo, Vinicius Gonçalves / Poso, Antti / de Moura Gatti, Fernando / Almeida, Vitor Medeiros / Marana, Sandro Roberto / Lopes, Carla Duque / Tezuka, Daiane Yukie / de Albuquerque, Sérgio / da Silva Emery, Flavio / Trossini, Gustavo Henrique Goulart

Pharmaceuticals (Basel, Switzerland)

2023 Volume 16, Issue 3

Abstract: Trypanosoma ... ...

Abstract	Trypanosoma cruzi
Language	English
Publishing date	2023-03-10
Publishing country	Switzerland
Document type	Journal Article
ZDB-ID	2193542-7
ISSN	1424-8247
ISSN	1424-8247
DOI	10.3390/ph16030428
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Article ; Online: From humans to hydra: patterns of cancer across the tree of life.

Albuquerque, Thales A F / Drummond do Val, Luisa / Doherty, Aoife / de Magalhães, João Pedro

Biological reviews of the Cambridge Philosophical Society

2018 Volume 93, Issue 3, Page(s) 1715–1734

Abstract: Cancer is a disease of multicellularity; it originates when cells become dysregulated due to mutations and grow out of control, invading other tissues and provoking discomfort, disability, and eventually death. Human life expectancy has greatly increased ...

Abstract	Cancer is a disease of multicellularity; it originates when cells become dysregulated due to mutations and grow out of control, invading other tissues and provoking discomfort, disability, and eventually death. Human life expectancy has greatly increased in the last two centuries, and consequently so has the incidence of cancer. However, how cancer patterns in humans compare to those of other species remains largely unknown. In this review, we search for clues about cancer and its evolutionary underpinnings across the tree of life. We discuss data from a wide range of species, drawing comparisons with humans when adequate, and interpret our findings from an evolutionary perspective. We conclude that certain cancers are uniquely common in humans, such as lung, prostate, and testicular cancer; while others are common across many species. Lymphomas appear in almost every animal analysed, including in young animals, which may be related to pathogens imposing selection on the immune system. Cancers unique to humans may be due to our modern environment or may be evolutionary accidents: random events in the evolution of our species. Finally, we find that cancer-resistant animals such as whales and mole-rats have evolved cellular mechanisms that help them avoid neoplasia, and we argue that there are multiple natural routes to cancer resistance.
MeSH term(s)	Animals ; Biological Evolution ; Genetic Predisposition to Disease ; Humans ; Hydra ; Neoplasms ; Species Specificity
Language	English
Publishing date	2018-04-16
Publishing country	England
Document type	Journal Article ; Research Support, Non-U.S. Gov't ; Review
ZDB-ID	1423558-4
ISSN	1469-185X ; 0006-3231 ; 1464-7931
ISSN (online)	1469-185X
ISSN	0006-3231 ; 1464-7931
DOI	10.1111/brv.12415
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Article ; Online: Consistent patterns of common species across tropical tree communities.

Cooper, Declan L M / Lewis, Simon L / Sullivan, Martin J P / Prado, Paulo I / Ter Steege, Hans / Barbier, Nicolas / Slik, Ferry / Sonké, Bonaventure / Ewango, Corneille E N / Adu-Bredu, Stephen / Affum-Baffoe, Kofi / de Aguiar, Daniel P P / Ahuite Reategui, Manuel Augusto / Aiba, Shin-Ichiro / Albuquerque, Bianca Weiss / de Almeida Matos, Francisca Dionízia / Alonso, Alfonso / Amani, Christian A / do Amaral, Dário Dantas /

do Amaral, Iêda Leão / Andrade, Ana / de Andrade Miranda, Ires Paula / Angoboy, Ilondea B / Araujo-Murakami, Alejandro / Arboleda, Nicolás Castaño / Arroyo, Luzmila / Ashton, Peter / Aymard C, Gerardo A / Baider, Cláudia / Baker, Timothy R / Balinga, Michael Philippe Bessike / Balslev, Henrik / Banin, Lindsay F / Bánki, Olaf S / Baraloto, Chris / Barbosa, Edelcilio Marques / Barbosa, Flávia Rodrigues / Barlow, Jos / Bastin, Jean-Francois / Beeckman, Hans / Begne, Serge / Bengone, Natacha Nssi / Berenguer, Erika / Berry, Nicholas / Bitariho, Robert / Boeckx, Pascal / Bogaert, Jan / Bonyoma, Bernard / Boundja, Patrick / Bourland, Nils / Boyemba Bosela, Faustin / Brambach, Fabian / Brienen, Roel / Burslem, David F R P / Camargo, José Luís / Campelo, Wegliane / Cano, Angela / Cárdenas, Sasha / Cárdenas López, Dairon / de Sá Carpanedo, Rainiellen / Carrero Márquez, Yrma Andreina / Carvalho, Fernanda Antunes / Casas, Luisa Fernanda / Castellanos, Hernán / Castilho, Carolina V / Cerón, Carlos / Chapman, Colin A / Chave, Jerome / Chhang, Phourin / Chutipong, Wanlop / Chuyong, George B / Cintra, Bruno Barçante Ladvocat / Clark, Connie J / Coelho de Souza, Fernanda / Comiskey, James A / Coomes, David A / Cornejo Valverde, Fernando / Correa, Diego F / Costa, Flávia R C / Costa, Janaina Barbosa Pedrosa / Couteron, Pierre / Culmsee, Heike / Cuni-Sanchez, Aida / Dallmeier, Francisco / Damasco, Gabriel / Dauby, Gilles / Dávila, Nállarett / Dávila Doza, Hilda Paulette / De Alban, Jose Don T / de Assis, Rafael L / De Canniere, Charles / De Haulleville, Thales / de Jesus Veiga Carim, Marcelo / Demarchi, Layon O / Dexter, Kyle G / Di Fiore, Anthony / Din, Hazimah Haji Mohammad / Disney, Mathias I / Djiofack, Brice Yannick / Djuikouo, Marie-Noël K / Do, Tran Van / Doucet, Jean-Louis / Draper, Freddie C / Droissart, Vincent / Duivenvoorden, Joost F / Engel, Julien / Estienne, Vittoria / Farfan-Rios, William / Fauset, Sophie / Feeley, Kenneth J / Feitosa, Yuri Oliveira / Feldpausch, Ted R / Ferreira, Cid / Ferreira, Joice / Ferreira, Leandro Valle / Fletcher, Christine D / Flores, Bernardo Monteiro / Fofanah, Alusine / Foli, Ernest G / Fonty, Émile / Fredriksson, Gabriella M / Fuentes, Alfredo / Galbraith, David / Gallardo Gonzales, George Pepe / Garcia-Cabrera, Karina / García-Villacorta, Roosevelt / Gomes, Vitor H F / Gómez, Ricardo Zárate / Gonzales, Therany / Gribel, Rogerio / Guedes, Marcelino Carneiro / Guevara, Juan Ernesto / Hakeem, Khalid Rehman / Hall, Jefferson S / Hamer, Keith C / Hamilton, Alan C / Harris, David J / Harrison, Rhett D / Hart, Terese B / Hector, Andy / Henkel, Terry W / Herbohn, John / Hockemba, Mireille B N / Hoffman, Bruce / Holmgren, Milena / Honorio Coronado, Euridice N / Huamantupa-Chuquimaco, Isau / Hubau, Wannes / Imai, Nobuo / Irume, Mariana Victória / Jansen, Patrick A / Jeffery, Kathryn J / Jimenez, Eliana M / Jucker, Tommaso / Junqueira, André Braga / Kalamandeen, Michelle / Kamdem, Narcisse G / Kartawinata, Kuswata / Kasongo Yakusu, Emmanuel / Katembo, John M / Kearsley, Elizabeth / Kenfack, David / Kessler, Michael / Khaing, Thiri Toe / Killeen, Timothy J / Kitayama, Kanehiro / Klitgaard, Bente / Labrière, Nicolas / Laumonier, Yves / Laurance, Susan G W / Laurance, William F / Laurent, Félix / Le, Tinh Cong / Le, Trai Trong / Leal, Miguel E / Leão de Moraes Novo, Evlyn Márcia / Levesley, Aurora / Libalah, Moses B / Licona, Juan Carlos / Lima Filho, Diógenes de Andrade / Lindsell, Jeremy A / Lopes, Aline / Lopes, Maria Aparecida / Lovett, Jon C / Lowe, Richard / Lozada, José Rafael / Lu, Xinghui / Luambua, Nestor K / Luize, Bruno Garcia / Maas, Paul / Magalhães, José Leonardo Lima / Magnusson, William E / Mahayani, Ni Putu Diana / Makana, Jean-Remy / Malhi, Yadvinder / Maniguaje Rincón, Lorena / Mansor, Asyraf / Manzatto, Angelo Gilberto / Marimon, Beatriz S / Marimon-Junior, Ben Hur / Marshall, Andrew R / Martins, Maria Pires / Mbayu, Faustin M / de Medeiros, Marcelo Brilhante / Mesones, Italo / Metali, Faizah / Mihindou, Vianet / Millet, Jerome / Milliken, William / Mogollón, Hugo F / Molino, Jean-François / Mohd Said, Mohd Nizam / Monteagudo Mendoza, Abel / Montero, Juan Carlos / Moore, Sam / Mostacedo, Bonifacio / Mozombite Pinto, Linder Felipe / Mukul, Sharif Ahmed / Munishi, Pantaleo K T / Nagamasu, Hidetoshi / Nascimento, Henrique Eduardo Mendonça / Nascimento, Marcelo Trindade / Neill, David / Nilus, Reuben / Noronha, Janaína Costa / Nsenga, Laurent / Núñez Vargas, Percy / Ojo, Lucas / Oliveira, Alexandre A / de Oliveira, Edmar Almeida / Ondo, Fidèle Evouna / Palacios Cuenca, Walter / Pansini, Susamar / Pansonato, Marcelo Petratti / Paredes, Marcos Ríos / Paudel, Ekananda / Pauletto, Daniela / Pearson, Richard G / Pena, José Luis Marcelo / Pennington, R Toby / Peres, Carlos A / Permana, Andrea / Petronelli, Pascal / Peñuela Mora, Maria Cristina / Phillips, Juan Fernando / Phillips, Oliver L / Pickavance, Georgia / Piedade, Maria Teresa Fernandez / Pitman, Nigel C A / Ploton, Pierre / Popelier, Andreas / Poulsen, John R / Prieto, Adriana / Primack, Richard B / Priyadi, Hari / Qie, Lan / Quaresma, Adriano Costa / de Queiroz, Helder Lima / Ramirez-Angulo, Hirma / Ramos, José Ferreira / Reis, Neidiane Farias Costa / Reitsma, Jan / Revilla, Juan David Cardenas / Riutta, Terhi / Rivas-Torres, Gonzalo / Robiansyah, Iyan / Rocha, Maira / Rodrigues, Domingos de Jesus / Rodriguez-Ronderos, M Elizabeth / Rovero, Francesco / Rozak, Andes H / Rudas, Agustín / Rutishauser, Ervan / Sabatier, Daniel / Sagang, Le Bienfaiteur / Sampaio, Adeilza Felipe / Samsoedin, Ismayadi / Satdichanh, Manichanh / Schietti, Juliana / Schöngart, Jochen / Scudeller, Veridiana Vizoni / Seuaturien, Naret / Sheil, Douglas / Sierra, Rodrigo / Silman, Miles R / Silva, Thiago Sanna Freire / da Silva Guimarães, José Renan / Simo-Droissart, Murielle / Simon, Marcelo Fragomeni / Sist, Plinio / Sousa, Thaiane R / de Sousa Farias, Emanuelle / de Souza Coelho, Luiz / Spracklen, Dominick V / Stas, Suzanne M / Steinmetz, Robert / Stevenson, Pablo R / Stropp, Juliana / Sukri, Rahayu S / Sunderland, Terry C H / Suzuki, Eizi / Swaine, Michael D / Tang, Jianwei / Taplin, James / Taylor, David M / Tello, J Sebastián / Terborgh, John / Texier, Nicolas / Theilade, Ida / Thomas, Duncan W / Thomas, Raquel / Thomas, Sean C / Tirado, Milton / Toirambe, Benjamin / de Toledo, José Julio / Tomlinson, Kyle W / Torres-Lezama, Armando / Tran, Hieu Dang / Tshibamba Mukendi, John / Tumaneng, Roven D / Umaña, Maria Natalia / Umunay, Peter M / Urrego Giraldo, Ligia Estela / Valderrama Sandoval, Elvis H / Valenzuela Gamarra, Luis / Van Andel, Tinde R / van de Bult, Martin / van de Pol, Jaqueline / van der Heijden, Geertje / Vasquez, Rodolfo / Vela, César I A / Venticinque, Eduardo Martins / Verbeeck, Hans / Veridiano, Rizza Karen A / Vicentini, Alberto / Vieira, Ima Célia Guimarães / Vilanova Torre, Emilio / Villarroel, Daniel / Villa Zegarra, Boris Eduardo / Vleminckx, Jason / von Hildebrand, Patricio / Vos, Vincent Antoine / Vriesendorp, Corine / Webb, Edward L / White, Lee J T / Wich, Serge / Wittmann, Florian / Zagt, Roderick / Zang, Runguo / Zartman, Charles Eugene / Zemagho, Lise / Zent, Egleé L / Zent, Stanford

Nature

2024 Volume 625, Issue 7996, Page(s) 728–734

Abstract: Trees structure the Earth's most biodiverse ecosystem, tropical forests. The vast number of tree species presents a formidable challenge to understanding these forests, including their response to environmental change, as very little is known about most ... ...

Abstract	Trees structure the Earth's most biodiverse ecosystem, tropical forests. The vast number of tree species presents a formidable challenge to understanding these forests, including their response to environmental change, as very little is known about most tropical tree species. A focus on the common species may circumvent this challenge. Here we investigate abundance patterns of common tree species using inventory data on 1,003,805 trees with trunk diameters of at least 10 cm across 1,568 locations
MeSH term(s)	Biodiversity ; Forests ; Trees/anatomy & histology ; Trees/classification ; Trees/growth & development ; Tropical Climate ; Africa ; Asia, Southeastern
Language	English
Publishing date	2024-01-10
Publishing country	England
Document type	Journal Article
ZDB-ID	120714-3
ISSN	1476-4687 ; 0028-0836
ISSN (online)	1476-4687
ISSN	0028-0836
DOI	10.1038/s41586-023-06820-z
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Zs.A 26: Show issues			Location: Je nach Verfügbarkeit (siehe Angabe bei Bestand) bis Jg. 1994: Bestellungen von Artikeln über das Online-Bestellformular Jg. 1995 - 2021: Lesesall (1.OG) ab Jg. 2022: Lesesaal (EG)
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Article: A Comprehensive Review of the Coffee Leaf Miner

Dantas, Juliana / Motta, Isabela O / Vidal, Leonardo A / Nascimento, Eliza F M B / Bilio, João / Pupe, Júlia M / Veiga, Adriano / Carvalho, Carlos / Lopes, Rogerio B / Rocha, Thales L / Silva, Luciano P / Pujol-Luz, José R / Albuquerque, Érika V S

Insects

2021 Volume 12, Issue 12

Abstract: The coffee leaf miner (CLM) ...

Abstract	The coffee leaf miner (CLM)
Language	English
Publishing date	2021-12-17
Publishing country	Switzerland
Document type	Journal Article ; Review
ISSN	2075-4450
ISSN	2075-4450
DOI	10.3390/insects12121130
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Article ; Online: Alpha-amylase inhibitor-1 gene from Phaseolus vulgaris expressed in Coffea arabica plants inhibits alpha-amylases from the coffee berry borer pest.

Barbosa, Aulus E A D / Albuquerque, Erika V S / Silva, Maria C M / Souza, Djair S L / Oliveira-Neto, Osmundo B / Valencia, Arnubio / Rocha, Thales L / Grossi-de-Sa, Maria F

BMC biotechnology

2010 Volume 10, Page(s) 44

Abstract: Background: Coffee is an important crop and is crucial to the economy of many developing countries, generating around US$70 billion per year. There are 115 species in the Coffea genus, but only two, C. arabica and C. canephora, are commercially ... ...

Abstract	Background: Coffee is an important crop and is crucial to the economy of many developing countries, generating around US$70 billion per year. There are 115 species in the Coffea genus, but only two, C. arabica and C. canephora, are commercially cultivated. Coffee plants are attacked by many pathogens and insect-pests, which affect not only the production of coffee but also its grain quality, reducing the commercial value of the product. The main insect-pest, the coffee berry borer (Hypotheneumus hampei), is responsible for worldwide annual losses of around US$500 million. The coffee berry borer exclusively damages the coffee berries, and it is mainly controlled by organochlorine insecticides that are both toxic and carcinogenic. Unfortunately, natural resistance in the genus Coffea to H. hampei has not been documented. To overcome these problems, biotechnological strategies can be used to introduce an alpha-amylase inhibitor gene (alpha-AI1), which confers resistance against the coffee berry borer insect-pest, into C. arabica plants. Results: We transformed C. arabica with the alpha-amylase inhibitor-1 gene (alpha-AI1) from the common bean, Phaseolus vulgaris, under control of the seed-specific phytohemagglutinin promoter (PHA-L). The presence of the alpha-AI1 gene in six regenerated transgenic T1 coffee plants was identified by PCR and Southern blotting. Immunoblotting and ELISA experiments using antibodies against alpha-AI1 inhibitor showed a maximum alpha-AI1 concentration of 0.29% in crude seed extracts. Inhibitory in vitro assays of the alpha-AI1 protein against H. hampei alpha-amylases in transgenic seed extracts showed up to 88% inhibition of enzyme activity. Conclusions: This is the first report showing the production of transgenic coffee plants with the biotechnological potential to control the coffee berry borer, the most important insect-pest of crop coffee.
MeSH term(s)	Animals ; Coffea/genetics ; Coffea/metabolism ; Coleoptera ; Gene Expression Regulation, Plant ; Genes, Plant ; Insect Control/methods ; Phaseolus/genetics ; Plant Lectins/genetics ; Plants, Genetically Modified/genetics ; Plants, Genetically Modified/metabolism ; Plasmids ; Promoter Regions, Genetic ; Seeds/genetics ; Seeds/metabolism ; Transformation, Genetic ; alpha-Amylases/antagonists & inhibitors
Chemical Substances	Plant Lectins ; alpha-amylase inhibitor, Phaseolus vulgaris ; alpha-Amylases (EC 3.2.1.1)
Language	English
Publishing date	2010-06-17
Publishing country	England
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ISSN	1472-6750
ISSN (online)	1472-6750
DOI	10.1186/1472-6750-10-44
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Article ; Online: Consistent patterns of common species across tropical tree communities

Cooper, Declan L.M. / Lewis, Simon L. / Sullivan, Martin J.P. / Prado, Paulo I. / ter Steege, Hans / Barbier, Nicolas / Slik, Ferry / Sonké, Bonaventure / Ewango, Corneille E.N. / Adu-Bredu, Stephen / Affum-Baffoe, Kofi / de Aguiar, Daniel P.P. / Ahuite Reategui, Manuel Augusto / Aiba, Shin Ichiro / Albuquerque, Bianca Weiss / de Almeida Matos, Francisca Dionízia / Alonso, Alfonso / Amani, Christian A. / do Amaral, Dário Dantas /

do Amaral, Iêda Leão / Andrade, Ana / de Andrade Miranda, Ires Paula / Angoboy, Ilondea B. / Araujo-Murakami, Alejandro / Arboleda, Nicolás Castaño / Arroyo, Luzmila / Ashton, Peter / Aymard C, Gerardo A. / Baider, Cláudia / Baker, Timothy R. / Balinga, Michael Philippe Bessike / Balslev, Henrik / Banin, Lindsay F. / Bánki, Olaf S. / Baraloto, Chris / Barbosa, Edelcilio Marques / Barbosa, Flávia Rodrigues / Barlow, Jos / Bastin, Jean Francois / Beeckman, Hans / Begne, Serge / Bengone, Natacha Nssi / Berenguer, Erika / Berry, Nicholas / Bitariho, Robert / Boeckx, Pascal / Bogaert, Jan / Bonyoma, Bernard / Boundja, Patrick / Bourland, Nils / Boyemba Bosela, Faustin / Brambach, Fabian / Brienen, Roel / Burslem, David F.R.P. / Campelo, Wegliane / Cano, Angela / Cárdenas, Sasha / Cárdenas López, Dairon / de Sá Carpanedo, Rainiellen / Carrero Márquez, Yrma Andreina / Carvalho, Fernanda Antunes / Casas, Luisa Fernanda / Castellanos, Hernán / Castilho, Carolina V. / Cerón, Carlos / Chapman, Colin A. / Chave, Jerome / Chhang, Phourin / Chutipong, Wanlop / Chuyong, George B. / Cintra, Bruno Barçante Ladvocat / Clark, Connie J. / Coelho de Souza, Fernanda / Comiskey, James A. / Coomes, David A. / Cornejo Valverde, Fernando / Correa, Diego F. / Costa, Flávia R.C. / Costa, Janaina Barbosa Pedrosa / Couteron, Pierre / Culmsee, Heike / Cuni-Sanchez, Aida / Dallmeier, Francisco / Damasco, Gabriel / Dauby, Gilles / Dávila, Nállarett / Dávila Doza, Hilda Paulette / De Alban, Jose Don T. / de Assis, Rafael L. / De Canniere, Charles / De Haulleville, Thales / de Jesus Veiga Carim, Marcelo / Demarchi, Layon O. / Dexter, Kyle G. / Di Fiore, Anthony / Din, Hazimah Haji Mohammad / Disney, Mathias I. / Djiofack, Brice Yannick / Djuikouo, Marie Noël K. / Do, Tran Van / Doucet, Jean Louis / Draper, Freddie C. / Droissart, Vincent / Duivenvoorden, Joost F. / Engel, Julien / Estienne, Vittoria / Farfan-Rios, William / Fauset, Sophie / Feeley, Kenneth J. / Feitosa, Yuri Oliveira / Feldpausch, Ted R. / Ferreira, Cid / Ferreira, Joice / Ferreira, Leandro Valle / Fletcher, Christine D. / Flores, Bernardo Monteiro / Fofanah, Alusine / Foli, Ernest G. / Fonty, Émile / Fredriksson, Gabriella M. / Fuentes, Alfredo / Galbraith, David / Gallardo Gonzales, George Pepe / Garcia-Cabrera, Karina / García-Villacorta, Roosevelt / Gomes, Vitor H.F. / Gómez, Ricardo Zárate / Gonzales, Therany / Gribel, Rogerio / Guedes, Marcelino Carneiro / Guevara, Juan Ernesto / Hakeem, Khalid Rehman / Hall, Jefferson S. / Hamer, Keith C. / Hamilton, Alan C. / Harris, David J. / Harrison, Rhett D. / Hart, Terese B. / Hector, Andy / Henkel, Terry W. / Herbohn, John / Hockemba, Mireille B.N. / Hoffman, Bruce / Holmgren, Milena / Honorio Coronado, Euridice N. / Huamantupa-Chuquimaco, Isau / Hubau, Wannes / Imai, Nobuo / Irume, Mariana Victória / Jansen, Patrick A. / Jeffery, Kathryn J. / Jimenez, Eliana M. / Jucker, Tommaso / Junqueira, André Braga / Kalamandeen, Michelle / Kamdem, Narcisse G. / Kartawinata, Kuswata / Kasongo Yakusu, Emmanuel / Katembo, John M. / Kearsley, Elizabeth / Kenfack, David / Kessler, Michael / Khaing, Thiri Toe / Killeen, Timothy J. / Kitayama, Kanehiro / Klitgaard, Bente / Labrière, Nicolas / Laumonier, Yves / Laurance, Susan G.W. / Laurance, William F. / Laurent, Félix / Le, Tinh Cong / Le, Trai Trong / Leal, Miguel E. / Leão de Moraes Novo, Evlyn Márcia / Levesley, Aurora / Libalah, Moses B. / Licona, Juan Carlos / de Andrade Lima Filho, Diógenes / Lindsell, Jeremy A. / Lopes, Aline / Lopes, Maria Aparecida / Lovett, Jon C. / Lowe, Richard / Lozada, José Rafael / Lu, Xinghui / Luambua, Nestor K. / Luize, Bruno Garcia / Maas, Paul / Magalhães, José Leonardo Lima / Magnusson, William E. / Mahayani, Ni Putu Diana / Makana, Jean Remy / Malhi, Yadvinder / Maniguaje Rincón, Lorena / Mansor, Asyraf / Manzatto, Angelo Gilberto / Marimon, Beatriz S. / Marimon-Junior, Ben Hur / Marshall, Andrew R. / Martins, Maria Pires / Mbayu, Faustin M. / de Medeiros, Marcelo Brilhante / Mesones, Italo / Metali, Faizah / Mihindou, Vianet / Millet, Jerome / Milliken, William / Mogollón, Hugo F. / Molino, Jean François / Mohd. Said, Mohd Nizam / Monteagudo Mendoza, Abel / Montero, Juan Carlos / Moore, Sam / Mostacedo, Bonifacio / Mozombite Pinto, Linder Felipe / Mukul, Sharif Ahmed / Munishi, Pantaleo K.T. / Nagamasu, Hidetoshi / Nascimento, Henrique Eduardo Mendonça / Nascimento, Marcelo Trindade / Neill, David / Nilus, Reuben / Noronha, Janaína Costa / Nsenga, Laurent / Núñez Vargas, Percy / Ojo, Lucas / Oliveira, Alexandre A. / de Oliveira, Edmar Almeida / Ondo, Fidèle Evouna / Palacios Cuenca, Walter / Pansini, Susamar / Pansonato, Marcelo Petratti / Paredes, Marcos Ríos / Paudel, Ekananda / Pauletto, Daniela / Pearson, Richard G. / Pena, José Luis Marcelo / Pennington, R.T. / Peres, Carlos A. / Permana, Andrea / Petronelli, Pascal / Peñuela Mora, Maria Cristina / Phillips, Juan Fernando / Phillips, Oliver L. / Pickavance, Georgia / Piedade, Maria Teresa Fernandez / Pitman, Nigel C.A. / Ploton, Pierre / Popelier, Andreas / Poulsen, John R. / Prieto, Adriana / Primack, Richard B. / Priyadi, Hari / Qie, Lan / Quaresma, Adriano Costa / de Queiroz, Helder Lima / Ramirez-Angulo, Hirma / Ramos, José Ferreira / Reis, Neidiane Farias Costa / Reitsma, Jan / Revilla, Juan David Cardenas / Riutta, Terhi / Rivas-Torres, Gonzalo / Robiansyah, Iyan / Rocha, Maira / de Jesus Rodrigues, Domingos / Rodriguez-Ronderos, Elizabeth / Rovero, Francesco / Rozak, Andes H. / Rudas, Agustín / Rutishauser, Ervan / Sabatier, Daniel / Sagang, Le Bienfaiteur / Sampaio, Adeilza Felipe / Samsoedin, Ismayadi / Satdichanh, Manichanh / Schietti, Juliana / Schöngart, Jochen / Scudeller, Veridiana Vizoni / Seuaturien, Naret / Sheil, Douglas / Sierra, Rodrigo / Silman, Miles R. / Silva, Thiago Sanna Freire / da Silva Guimarães, José Renan / Simo-Droissart, Murielle / Simon, Marcelo Fragomeni / Sist, Plinio / Sousa, Thaiane R. / de Sousa Farias, Emanuelle / de Souza Coelho, Luiz / Spracklen, Dominick V. / Stas, Suzanne M. / Steinmetz, Robert / Stevenson, Pablo R. / Stropp, Juliana / Sukri, Rahayu S. / Sunderland, Terry C.H. / Suzuki, Eizi / Swaine, Michael D. / Tang, Jianwei / Taplin, James / Taylor, David M. / Tello, J.S. / Terborgh, John / Texier, Nicolas / Theilade, Ida / Thomas, Duncan W. / Thomas, Raquel / Thomas, Sean C. / Tirado, Milton / Toirambe, Benjamin / de Toledo, José Julio / Tomlinson, Kyle W. / Torres-Lezama, Armando / Tran, Hieu Dang / Tshibamba Mukendi, John / Tumaneng, Roven D. / Umaña, Maria Natalia / Umunay, Peter M. / Urrego Giraldo, Ligia Estela / Valderrama Sandoval, Elvis H. / Valenzuela Gamarra, Luis / van Andel, Tinde R. / van de Bult, Martin / van de Pol, Jaqueline / van der Heijden, Geertje / Vasquez, Rodolfo / Vela, César I.A. / Venticinque, Eduardo Martins / Verbeeck, Hans / Veridiano, Rizza Karen A. / Vicentini, Alberto / Vieira, Ima Célia Guimarães / Vilanova Torre, Emilio / Villarroel, Daniel / Villa Zegarra, Boris Eduardo / Vleminckx, Jason / von Hildebrand, Patricio / Vos, Vincent Antoine / Vriesendorp, Corine / Webb, Edward L. / White, Lee J.T. / Wich, Serge / Wittmann, Florian / Zagt, Roderick / Zang, Runguo / Zartman, Charles Eugene / Zemagho, Lise / Zent, Egleé L. / Zent, Stanford

Nature

2024 Volume 625, Issue 7996

Abstract: Trees structure the Earth’s most biodiverse ecosystem, tropical forests. The vast number of tree species presents a formidable challenge to understanding these forests, including their response to environmental change, as very little is known about most ... ...

Abstract	Trees structure the Earth’s most biodiverse ecosystem, tropical forests. The vast number of tree species presents a formidable challenge to understanding these forests, including their response to environmental change, as very little is known about most tropical tree species. A focus on the common species may circumvent this challenge. Here we investigate abundance patterns of common tree species using inventory data on 1,003,805 trees with trunk diameters of at least 10 cm across 1,568 locations 1–6 in closed-canopy, structurally intact old-growth tropical forests in Africa, Amazonia and Southeast Asia. We estimate that 2.2%, 2.2% and 2.3% of species comprise 50% of the tropical trees in these regions, respectively. Extrapolating across all closed-canopy tropical forests, we estimate that just 1,053 species comprise half of Earth’s 800 billion tropical trees with trunk diameters of at least 10 cm. Despite differing biogeographic, climatic and anthropogenic histories 7, we find notably consistent patterns of common species and species abundance distributions across the continents. This suggests that fundamental mechanisms of tree community assembly may apply to all tropical forests. Resampling analyses show that the most common species are likely to belong to a manageable list of known species, enabling targeted efforts to understand their ecology. Although they do not detract from the importance of rare species, our results open new opportunities to understand the world’s most diverse forests, including modelling their response to environmental change, by focusing on the common species that constitute the majority of their trees.
Keywords	Life Science
Language	English
Publishing country	nl
Document type	Article ; Online
ZDB-ID	120714-3
ISSN	1476-4687 ; 0028-0836
ISSN (online)	1476-4687
ISSN	0028-0836
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article: A Comprehensive Review of the Coffee Leaf Miner Leucoptera coffeella (Lepidoptera: Lyonetiidae)—A Major Pest for the Coffee Crop in Brazil and Others Neotropical Countries

Dantas, Juliana / Motta, Isabela O. / Vidal, Leonardo A. / Nascimento, Eliza F. M. B. / Bilio, João / Pupe, Júlia M. / Veiga, Adriano / Carvalho, Carlos / Lopes, Rogerio B. / Rocha, Thales L. / Silva, Luciano P. / Pujol-Luz, José R. / Albuquerque, Érika V. S.

Insects. 2021 Dec. 17, v. 12, no. 12

2021

Abstract: The coffee leaf miner (CLM) Leucoptera coffeella moth is a major threat to coffee production. Insect damage is related to the feeding behavior of the larvae on the leaf. During the immature life stages, the insect feeds in the mesophyll triggering ... ...

Abstract	The coffee leaf miner (CLM) Leucoptera coffeella moth is a major threat to coffee production. Insect damage is related to the feeding behavior of the larvae on the leaf. During the immature life stages, the insect feeds in the mesophyll triggering necrosis and causing loss of photosynthetic capacity, defoliation and significant yield loss to coffee crops. Chemical control is used to support the coffee production chain, though market requirements move toward conscious consumption claiming for more sustainable methods. In this overview, we discuss aspects about the CLM concerning biology, history, geographical distribution, economic impacts, and the most relevant control strategies in progress. Insights to develop an integrated approach for a safer and eco-friendly control of the CLM are discussed here, including bio-extracts, nanotechnology, pheromones, and tolerant cultivars.
Keywords	Neotropics ; Perileucoptera coffeella ; chemical control ; cultivars ; defoliation ; geographical distribution ; leafminers ; leaves ; markets ; mesophyll ; moths ; necrosis ; photosynthesis ; Brazil
Language	English
Dates of publication	2021-1217
Publishing place	Multidisciplinary Digital Publishing Institute
Document type	Article
ZDB-ID	2662247-6
ISSN	2075-4450
ISSN	2075-4450
DOI	10.3390/insects12121130
Database	NAL-Catalogue (AGRICOLA)

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Article ; Online: The ongoing COVID-19 epidemic in Minas Gerais, Brazil: insights from epidemiological data and SARS-CoV-2 whole genome sequencing.

Xavier, Joilson / Giovanetti, Marta / Adelino, Talita / Fonseca, Vagner / Barbosa da Costa, Alana Vitor / Ribeiro, Adriana Aparecida / Felicio, Katlin Nascimento / Duarte, Clara Guerra / Ferreira Silva, Marcos Vinicius / Salgado, Álvaro / Lima, Mauricio Teixeira / de Jesus, Ronaldo / Fabri, Allison / Soares Zoboli, Cristiane Franco / Souza Santos, Thales Gutemberg / Iani, Felipe / Ciccozzi, Massimo / Bispo de Filippis, Ana Maria / Teixeira de Siqueira, Marilda Agudo Mendonça /

de Abreu, André Luiz / de Azevedo, Vasco / Ramalho, Dario Brock / Campelo de Albuquerque, Carlos F / de Oliveira, Tulio / Holmes, Edward C / Lourenço, José / Junior Alcantara, Luiz Carlos / Assunção Oliveira, Marluce Aparecida

Emerging microbes & infections

2020 Volume 9, Issue 1, Page(s) 1824–1834

Abstract: The recent emergence of a coronavirus (SARS-CoV-2), first identified in the Chinese city of Wuhan in December 2019, has had major public health and economic consequences. Although 61,888 confirmed cases were reported in Brazil by 28 April 2020, little is ...

Abstract	The recent emergence of a coronavirus (SARS-CoV-2), first identified in the Chinese city of Wuhan in December 2019, has had major public health and economic consequences. Although 61,888 confirmed cases were reported in Brazil by 28 April 2020, little is known about the SARS-CoV-2 epidemic in this country. To better understand the recent epidemic in the second most populous state in southeast Brazil - Minas Gerais (MG) - we sequenced 40 complete SARS-CoV-2 genomes from MG cases and examined epidemiological data from three Brazilian states. Both the genome analyses and the geographical distribution of reported cases indicate for multiple independent introductions into MG. Epidemiological estimates of the reproductive number (R) using different data sources and theoretical assumptions suggest the potential for sustained virus transmission despite a reduction in R from the first reported case to the end of April 2020. The estimated date of SARS-CoV-2 introduction into Brazil was consistent with epidemiological data from the first case of a returned traveller from Lombardy, Italy. These findings highlight the nature of the COVID-19 epidemic in MG and reinforce the need for real-time and continued genomic surveillance strategies to better understand and prepare for the epidemic spread of emerging viral pathogens..
MeSH term(s)	Adult ; Aged ; Betacoronavirus/genetics ; Brazil/epidemiology ; COVID-19 ; Coronavirus Infections/epidemiology ; Coronavirus Infections/transmission ; Female ; Genome, Viral ; Geography ; Humans ; Male ; Middle Aged ; Pandemics ; Pneumonia, Viral/epidemiology ; Pneumonia, Viral/transmission ; SARS-CoV-2 ; Whole Genome Sequencing ; Young Adult
Keywords	covid19
Language	English
Publishing date	2020-07-29
Publishing country	United States
Document type	Journal Article
ZDB-ID	2681359-2
ISSN	2222-1751 ; 2222-1751
ISSN (online)	2222-1751
ISSN	2222-1751
DOI	10.1080/22221751.2020.1803146
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article ; Online: Featured Article: Modulation of fetal hemoglobin in hereditary persistence of fetal hemoglobin deletion type-2, compared to Sicilian δβ-thalassemia, by BCL11A and SOX6-targeting microRNAs.

Fornari, Thais A / Lanaro, Carolina / Albuquerque, Dulcinéia M / Ferreira, Regiane / Costa, Fernando F

Experimental biology and medicine (Maywood, N.J.)

2017 Volume 242, Issue 3, Page(s) 267–274

Abstract: ... miRNAs that were up-regulated in HPFH-2 or in DB-Thal. A down-regulation of BCL11A gene expression ...

Abstract	Hereditary persistence of fetal hemoglobin deletion type-2 (HPFH-2) and Sicilian-δβ-thalassemia are conditions described as large deletions of the human β-like globin cluster, with absent β-globin chains and a compensatory variable increase in γ-globin. HPFH, in general, may be distinguished from DB-Thalassemia by higher fetal hemoglobin (HbF) levels, absence of anemia and hypochromic and microcytic erythrocytes. MicroRNAs (miRNAs) regulate a range of cellular processes including erythropoiesis and regulation of transcription factors such as the BCL11A and SOX6 genes, which are related to the regulation of γ-globin expression. In this report, a possible association among the overexpression of miRNAs and the expression of the γ-globin gene was analyzed in these two conditions. Forty-nine differentially expressed miRNAs were identified by microarrays in CD34+-derived erythroid cells of two subjects heterozygous for Sicilian-δβ-thalassemia, 2 for HPFH-2 and 3 for controls after 13 days of culture. Some of these miRNAs may participate in γ-globin gene regulation and red blood cell function. The BCL11A gene was found to be potentially targeted by 12 miRNAs that were up-regulated in HPFH-2 or in DB-Thal. A down-regulation of BCL11A gene expression in HPFH-2 was verified by quantitative polymerase chain reaction. These data suggest an important action for miRNA that may partially explain the phenotypic differences between HPFH-2 and Sicilian δβ-thalassemia and the increased expression of γ-globin in these conditions.
MeSH term(s)	Antigens, CD34/metabolism ; Base Sequence ; Carrier Proteins/genetics ; Down-Regulation/genetics ; Female ; Fetal Hemoglobin/genetics ; Humans ; Male ; MicroRNAs/biosynthesis ; MicroRNAs/genetics ; Nuclear Proteins/genetics ; Real-Time Polymerase Chain Reaction ; SOXD Transcription Factors/genetics ; Sequence Analysis, DNA ; Sequence Deletion/genetics ; beta-Globins/genetics ; beta-Thalassemia/genetics ; delta-Thalassemia/genetics ; gamma-Globins/genetics ; gamma-Globins/metabolism
Chemical Substances	Antigens, CD34 ; BCL11A protein, human ; Carrier Proteins ; MicroRNAs ; Nuclear Proteins ; SOX6 protein, human ; SOXD Transcription Factors ; beta-Globins ; gamma-Globins ; Fetal Hemoglobin (9034-63-3)
Language	English
Publishing date	2017-02
Publishing country	England
Document type	Journal Article
ZDB-ID	4015-0
ISSN	1535-3699 ; 1525-1373 ; 0037-9727
ISSN (online)	1535-3699 ; 1525-1373
ISSN	0037-9727
DOI	10.1177/1535370216668052
Database	MEDical Literature Analysis and Retrieval System OnLINE

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