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Article ; Online: Expansion of the neurodevelopmental phenotypic spectrum of CKAP2L-related Filippi syndrome to include an adolescent male with normal intellect.

Yang, Xiao-Ru / Marwaha, Ashish

American journal of medical genetics. Part A

2022 Volume 188, Issue 6, Page(s) 1928–1929

MeSH term(s)	Adolescent ; Facies ; Growth Disorders ; Humans ; Intellectual Disability/diagnosis ; Intellectual Disability/genetics ; Male ; Microcephaly/diagnosis ; Microcephaly/genetics ; Neurodevelopmental Disorders ; Syndactyly
Language	English
Publishing date	2022-02-28
Publishing country	United States
Document type	Letter
ZDB-ID	2108614-X
ISSN	1552-4833 ; 0148-7299 ; 1552-4825
ISSN (online)	1552-4833
ISSN	0148-7299 ; 1552-4825
DOI	10.1002/ajmg.a.62702
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Article ; Online: Rod-cone dystrophy in an adult with GNB1-related disorder: An expansion of the phenotype and natural history.

Yang, Xiao-Ru / Kassam, Faazil / Innes, A Micheil

American journal of medical genetics. Part C, Seminars in medical genetics

2023 Volume 193, Issue 2, Page(s) 183–187

Abstract: GNB1-related disorder is characterized by intellectual disability, abnormal tone, and other variable neurologic and systemic features. GNB1 encodes the β1 subunit of the heterotrimeric G-protein, a complex with a key role in signal transduction. ... ...

Abstract	GNB1-related disorder is characterized by intellectual disability, abnormal tone, and other variable neurologic and systemic features. GNB1 encodes the β1 subunit of the heterotrimeric G-protein, a complex with a key role in signal transduction. Consistent with its particularly high expression in rod photoreceptors, G
MeSH term(s)	Humans ; Adult ; Mice ; Animals ; Middle Aged ; Cone-Rod Dystrophies/genetics ; Retinitis Pigmentosa/genetics ; Retina ; Retinal Rod Photoreceptor Cells ; Phenotype ; GTP-Binding Protein beta Subunits/genetics
Chemical Substances	GNB1 protein, human ; GTP-Binding Protein beta Subunits
Language	English
Publishing date	2023-05-22
Publishing country	United States
Document type	Case Reports
ZDB-ID	2108622-9
ISSN	1552-4876 ; 0148-7299 ; 1552-4868
ISSN (online)	1552-4876
ISSN	0148-7299 ; 1552-4868
DOI	10.1002/ajmg.c.32045
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Article ; Online: A novel bivalent interaction mode underlies a non-catalytic mechanism for Pin1-mediated protein kinase C regulation.

Chen, Xiao-Ru / Dixit, Karuna / Yang, Yuan / McDermott, Mark I / Imam, Hasan Tanvir / Bankaitis, Vytas A / Igumenova, Tatyana I

eLife

2024 Volume 13

Abstract: Regulated hydrolysis of the phosphoinositide phosphatidylinositol(4,5)-bis-phosphate to diacylglycerol and inositol-1,4,5- ... ...

Abstract	Regulated hydrolysis of the phosphoinositide phosphatidylinositol(4,5)-bis-phosphate to diacylglycerol and inositol-1,4,5-P
MeSH term(s)	NIMA-Interacting Peptidylprolyl Isomerase/metabolism ; NIMA-Interacting Peptidylprolyl Isomerase/chemistry ; NIMA-Interacting Peptidylprolyl Isomerase/genetics ; Humans ; Protein Binding ; Protein Kinase C/metabolism ; Protein Kinase C/chemistry ; Protein Kinase C/genetics ; Protein Conformation
Chemical Substances	NIMA-Interacting Peptidylprolyl Isomerase ; PIN1 protein, human (EC 5.2.1.8) ; Protein Kinase C (EC 2.7.11.13)
Language	English
Publishing date	2024-04-30
Publishing country	England
Document type	Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, N.I.H., Extramural
ZDB-ID	2687154-3
ISSN	2050-084X ; 2050-084X
ISSN (online)	2050-084X
ISSN	2050-084X
DOI	10.7554/eLife.92884
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Article ; Online: In Situ Li-Plating Diagnosis for Fast-Charging Li-Ion Batteries Enabled by Relaxation-Time Detection.

Xu, Lei / Xiao, Ye / Yang, Yi / Xu, Rui / Yao, Yu-Xing / Chen, Xiao-Ru / Li, Ze-Heng / Yan, Chong / Huang, Jia-Qi

Advanced materials (Deerfield Beach, Fla.)

2023 Volume 35, Issue 42, Page(s) e2301881

Abstract: The Li-plating behavior of Li-ion batteries under fast-charging conditions is elusive due to a lack of reliable indicators of the Li-plating onset. In this work, the relaxation time constant of the charge-transfer process ( ... ...

Abstract	The Li-plating behavior of Li-ion batteries under fast-charging conditions is elusive due to a lack of reliable indicators of the Li-plating onset. In this work, the relaxation time constant of the charge-transfer process (τ
Language	English
Publishing date	2023-09-17
Publishing country	Germany
Document type	Journal Article
ZDB-ID	1474949-X
ISSN	1521-4095 ; 0935-9648
ISSN (online)	1521-4095
ISSN	0935-9648
DOI	10.1002/adma.202301881
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Article ; Online: Characterization of microbial community, ecological functions and antibiotic resistance in estuarine plastisphere.

Yang, Le-Yang / Huang, Xin-Rong / Neilson, Roy / Zhou, Shu-Yi-Dan / Li, Zhao-Lei / Yang, Xiao-Ru / Su, Xiao-Xuan

The Science of the total environment

2023 Volume 866, Page(s) 161322

Abstract: The plastisphere is a new ecological niche. Compared to the surrounding water, microbial community composition associated with the plastisphere is known to differ with functional consequences. Here, this study characterized the bacterial and fungal ... ...

Abstract	The plastisphere is a new ecological niche. Compared to the surrounding water, microbial community composition associated with the plastisphere is known to differ with functional consequences. Here, this study characterized the bacterial and fungal communities associated with four types of plastisphere (polyethylene, polystyrene, polypropylene and polyvinyl chloride) in an estuarine habitat; assessed ecological functions including carbon, nitrogen, phosphorus and sulfur cycling, and determined the presence of antibiotic resistance genes (ARGs) and human pathogens. Stochastic processes dominated the community assembly of microorganisms on the plastisphere. Several functional genera related to nutrient cycling were enriched in the plastisphere. Compared to surrounding water and other plastisphere, the abundances of carbon, nitrogen and phosphorus cycling genes (cdaR, nosZ and chpy etc.) and ARGs (aadA2-1, cfa and catB8 etc.) were significantly increased in polyvinyl chloride plastisphere. In contrast, the polystyrene plastisphere was the preferred substrate for several pathogens being enriched with for example, Giardia lamblia 18S rRNA, Klebsiella pneumoniae phoE and Legionella spp. 23S rRNA. Overall, this study showed that different plastisphere had different effects on ecological functions and health risk in estuaries and emphasizes the importance of controlling plastic pollution in estuaries. Data from this study support global policy drivers that seek to reduce plastic pollution and offer insights into ecological functions in a new ecological niche of the Anthropocene.
MeSH term(s)	Humans ; Polystyrenes ; Polyvinyl Chloride ; Plastics ; Microbiota ; Water ; Drug Resistance, Microbial/genetics ; Anti-Bacterial Agents ; Nitrogen ; Phosphorus
Chemical Substances	Polystyrenes ; Polyvinyl Chloride (9002-86-2) ; Plastics ; Water (059QF0KO0R) ; Anti-Bacterial Agents ; Nitrogen (N762921K75) ; Phosphorus (27YLU75U4W)
Language	English
Publishing date	2023-01-02
Publishing country	Netherlands
Document type	Journal Article
ZDB-ID	121506-1
ISSN	1879-1026 ; 0048-9697
ISSN (online)	1879-1026
ISSN	0048-9697
DOI	10.1016/j.scitotenv.2022.161322
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Zs.A 949: Show issues

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Article: Anammox Bacteria Are Potentially Involved in Anaerobic Ammonium Oxidation Coupled to Iron(III) Reduction in the Wastewater Treatment System.

Yang, Xiao-Ru / Li, Hu / Su, Jian-Qiang / Zhou, Guo-Wei

Frontiers in microbiology

2021 Volume 12, Page(s) 717249

Abstract: Anaerobic ammonium oxidation coupled to nitrite reduction (termed as Anammox) was demonstrated as an efficient pathway to remove nitrogen from a wastewater treatment system. Recently, anaerobic ammonium oxidation was also identified to be linked to iron( ... ...

Abstract	Anaerobic ammonium oxidation coupled to nitrite reduction (termed as Anammox) was demonstrated as an efficient pathway to remove nitrogen from a wastewater treatment system. Recently, anaerobic ammonium oxidation was also identified to be linked to iron(III) reduction (termed Feammox) with dinitrogen, nitrite, or nitrate as end-product, reporting to enhance nitrogen removal from the wastewater treatment system. However, little is known about the role of Anammox bacteria in the Feammox process. Here, slurry from wastewater reactor amended with ferrihydrite was employed to investigate activity of Anammox bacteria in the Feammox process using the
Language	English
Publishing date	2021-09-10
Publishing country	Switzerland
Document type	Journal Article
ZDB-ID	2587354-4
ISSN	1664-302X
ISSN	1664-302X
DOI	10.3389/fmicb.2021.717249
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Article ; Online: Lipid Metabolites as Potential Regulators of the Antibiotic Resistome in

Jin, Ming-Kang / Zhang, Qi / Xu, Nuohan / Zhang, Zhenyan / Guo, Hong-Qin / Li, Jian / Ding, Kai / Sun, Xin / Yang, Xiao-Ru / Zhu, Dong / Su, Xiaoxuan / Qian, Haifeng / Zhu, Yong-Guan

Environmental science & technology

2024 Volume 58, Issue 10, Page(s) 4476–4486

Abstract: Antibiotic resistance genes (ARGs) are ancient but have become a modern critical threat to health. Gut microbiota, a dynamic reservoir for ARGs, transfer resistance between individuals. Surveillance of the antibiotic resistome in the gut during different ...

Abstract	Antibiotic resistance genes (ARGs) are ancient but have become a modern critical threat to health. Gut microbiota, a dynamic reservoir for ARGs, transfer resistance between individuals. Surveillance of the antibiotic resistome in the gut during different host growth phases is critical to understanding the dynamics of the resistome in this ecosystem. Herein, we disentangled the ARG profiles and the dynamic mechanism of ARGs in the egg and adult phases of
MeSH term(s)	Humans ; Adult ; Aged ; Genes, Bacterial ; Anti-Bacterial Agents/pharmacology ; Ecosystem ; Lipids ; Ants
Chemical Substances	Anti-Bacterial Agents ; Lipids
Language	English
Publishing date	2024-02-21
Publishing country	United States
Document type	Journal Article
ISSN	1520-5851
ISSN (online)	1520-5851
DOI	10.1021/acs.est.3c05741
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Article ; Online: Temporal dynamics of soil bacterial network regulate soil resistomes

Xiang, Qian / Zhu, Dong / Qiao, Min / Yang, Xiao‐Ru / Li, Gang / Chen, Qing‐Lin / Zhu, Yong‐Guan

Environmental Microbiology. 2023 Feb., v. 25, no. 2 p.505-514

2023

Abstract: Soil bacteria are diverse and form complicated ecological networks through various microbial interactions, which play important roles in soil multi‐functionality. However, the seasonal effects on the bacterial network, especially the relationship between ...

Abstract	Soil bacteria are diverse and form complicated ecological networks through various microbial interactions, which play important roles in soil multi‐functionality. However, the seasonal effects on the bacterial network, especially the relationship between bacterial network topological features and soil resistomes remains underexplored, which impedes our ability to unveil the mechanisms of the temporal‐dynamics of antibiotic resistance genes (ARGs). Here, a field investigation was conducted across four seasons at the watershed scale. We observed significant seasonal variation in bacterial networks, with lower complexity and stability in autumn, and a wider bacterial community niche in summer. Similar to bacterial communities, the co‐occurrence networks among ARGs also shift with seasonal change, particularly with respect to the topological features of the node degree, which on average was higher in summer than in the other seasons. Furthermore, the nodes with higher betweenness, stress, degree, and closeness centrality in the bacterial network showed strong relationships with the 10 major classes of ARGs. These findings highlighted the changes in the topological properties of bacterial networks that could further alter antibiotic resistance in soil. Together, our results reveal the temporal dynamics of bacterial ecological networks at the watershed scale, and provide new insights into antibiotic resistance management under environmental changes.
Keywords	antibiotic resistance ; antibiotic resistance genes ; autumn ; bacterial communities ; resistance management ; seasonal variation ; soil ; soil bacteria ; summer ; topology ; watersheds
Language	English
Dates of publication	2023-02
Size	p. 505-514.
Publishing place	John Wiley & Sons, Inc.
Document type	Article ; Online
Note	JOURNAL ARTICLE
ZDB-ID	2020213-1
ISSN	1462-2920 ; 1462-2912
ISSN (online)	1462-2920
ISSN	1462-2912
DOI	10.1111/1462-2920.16298
Database	NAL-Catalogue (AGRICOLA)

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Article ; Online: Urban greenspace types influence the microbial community assembly and antibiotic resistome more in the phyllosphere than in the soil.

Huang, Xin-Rong / Neilson, Roy / Yang, Le-Yang / Deng, Jing-Jun / Zhou, Shu-Yi-Dan / Li, Hu / Zhu, Yong-Guan / Yang, Xiao-Ru

Chemosphere

2023 Volume 338, Page(s) 139533

Abstract: Urban greenspace (UGS) is recognized to confer significant societal benefits, but few studies explored the microbial communities and antibiotic resistance genes (ARGs) from different urban greenspace types. Here, we collected leaf and soil samples from ... ...

Abstract	Urban greenspace (UGS) is recognized to confer significant societal benefits, but few studies explored the microbial communities and antibiotic resistance genes (ARGs) from different urban greenspace types. Here, we collected leaf and soil samples from forest, greenbelt, and parkland to analyze microbial community assembly and ARG profile. For phyllosphere fungal community, the α-diversity was higher in forest, compared to those in greenbelt and parkland. Moreover, urban greenspace types altered the community assembly. Stochastic processes had a greater effect on phyllosphere fungal community in greenbelt and parkland, while in forest they were dominated by deterministic processes. In contrast, no significant differences in bacterial community diversity, community assembly were observed between the samples collected from different urban greenspace types. A total of 153 ARGs and mobile genetic elements (MGEs) were detected in phyllosphere and soil with resistance to the majority classes of antibiotics commonly applied to humans and animals. Structural equation model further revealed that a direct association between greenspace type and ARGs in the phyllosphere even after considering the effects of all other factors simultaneously. Our findings provide new insights into the microbial communities and antibiotic resistome of urban greenspaces and the potential risk linked with human health.
MeSH term(s)	Animals ; Humans ; Anti-Bacterial Agents/pharmacology ; Soil/chemistry ; Genes, Bacterial ; Parks, Recreational ; Microbiota ; Soil Microbiology
Chemical Substances	Anti-Bacterial Agents ; Soil
Language	English
Publishing date	2023-07-16
Publishing country	England
Document type	Journal Article
ZDB-ID	120089-6
ISSN	1879-1298 ; 0045-6535 ; 0366-7111
ISSN (online)	1879-1298
ISSN	0045-6535 ; 0366-7111
DOI	10.1016/j.chemosphere.2023.139533
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Zs.A 2540: Show issues

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Article ; Online: Adaptive shifts in plant traits associated with nitrogen removal driven by phytoremediation strategies in subtropical river restoration.

Xin, Yu / Liu, Lin / Yang, Xiao-Ru / Yang, Le-Yang / Guang, Shan-Bin / Zheng, Yu-Ming / Zhao, Quan-Bao

Water research

2023 Volume 249, Page(s) 121008

Abstract: Phytoremediation, which is commonly carried out through hydroponics and substrate-based strategies, is essential for the effectiveness of nature-based engineered solutions aimed at addressing excess nitrogen in aquatic ecosystems. However, the ... ...

Abstract	Phytoremediation, which is commonly carried out through hydroponics and substrate-based strategies, is essential for the effectiveness of nature-based engineered solutions aimed at addressing excess nitrogen in aquatic ecosystems. However, the performance and mechanisms of plants involving nitrogen removal between different strategies need to be deeply understood. Here, this study employed in-situ cultivation coupled with static nitrogen tracing experiments to elucidate the influence of both strategies on plant traits associated with nitrogen removal. The results indicated that removal efficiencies in plants with substrate-based strategies for ammonium nitrogen and nitrate nitrogen were 30.51-71.11 % and 16.82-99.95 %, respectively, which were significantly higher than those with hydroponics strategies (25.98-58.18 % and 7.29-79.19 %, respectively). Similarly, the plant nitrogen uptake rates in the substrate-based strategy also generally showed higher levels compared to hydroponics strategies (P < 0.05). Meanwhile, the microorganisms-mediated nitrous oxide emission rates in the substrate-based strategy during summer (unamended: 0.00-0.58 μg/g/d; potential: 3.35-7.65 μg/g/d) were obviously lower than those in the hydroponics strategy (unamended: 2.23-11.70 μg/g/d; potential: 9.72-43.09 μg/g/d) (P < 0.05). Notably, analysis of similarity tests indicated that the influences of strategy on the above parameters generally surpass the effects attributable to interspecies plant differences, particularly during summer (R > 0, P < 0.05). Based on statistical and metagenomic analyses, this study revealed that these differences were driven by the stabilizing influence of substrate-based strategy on plant roots and enhancing synergistic interplay among biochemical factors within plant-root systems. Even so, phytoremediation strategies did not significantly alter the characteristics of plants with regards to their tendency towards ammonium nitrogen uptake (up to 87.68 %) and dissimilatory nitrate reduction to ammonium as primary biological pathway for nitrogen transformation which accounted for 53.66-96.47 % nitrate removal. In summary, this study suggested that the substrate-based strategy should be a more effective strategy for enhancing the nitrogen removal ability of plants in subtropical river restoration practices.
MeSH term(s)	Nitrates ; Ecosystem ; Biodegradation, Environmental ; Rivers ; Nitrogen/metabolism ; Denitrification ; Ammonium Compounds
Chemical Substances	Nitrates ; Nitrogen (N762921K75) ; Ammonium Compounds
Language	English
Publishing date	2023-12-10
Publishing country	England
Document type	Journal Article
ZDB-ID	202613-2
ISSN	1879-2448 ; 0043-1354
ISSN (online)	1879-2448
ISSN	0043-1354
DOI	10.1016/j.watres.2023.121008
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