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  1. Article ; Online: Utility of Continuous Paravertebral Block After Retroperitoneal Abdominal Aortic Aneurysm Repair.

    Jackson, Cody B / Desai, Jamshed / Lee, W Anthony / Renfro, Leslie A

    Annals of vascular surgery

    2023  Volume 104, Page(s) 124–131

    Abstract: Background: Open abdominal aortic aneurysm (AAA) repairs can be associated with significant pain and morbidity. Previous studies have demonstrated utility of adjunctive epidural analgesia (EA) in addition to general anesthesia (GA) to reduce pain and ... ...

    Abstract Background: Open abdominal aortic aneurysm (AAA) repairs can be associated with significant pain and morbidity. Previous studies have demonstrated utility of adjunctive epidural analgesia (EA) in addition to general anesthesia (GA) to reduce pain and blunt the maladaptive surgical stress response. However, EA may be complicated by epidural hematomas and severe hypotension. Recently, we started using continuous paravertebral block (PVB) for perioperative analgesia after retroperitoneal AAA repair. PVB has some distinct advantages over EA such as unilateral localization, reduced risk of hypotension, and minimal risk of epidural hematoma in the setting of systemic heparinization. This study aimed to examine the utility of PVB by comparing total opioid consumption in the postoperative period among patients who received GA + PVB and those who received GA alone.
    Methods: This retrospective matched cohort study included 62 patients who underwent elective retroperitoneal AAA repair between January 2019 and August 2022. Thirty-one subjects managed with GA + PVB were compared with 31 control subjects treated with GA alone, matched on following criteria: age, sex, and cross-clamp location. Outcome measures included total opioid analgesics administered during their inhospital postoperative course, time to extubation, time to return to baseline activity, time to normal bowel function, and length of stay. Opioid doses were converted to morphine milligram equivalents (MMEs).
    Results: The GA + PVB group required significantly less opioid analgesics (81 ± 53 MME) than the GA group (171 ± 121 MME) (P < 0.001). Compared to GA alone, GA + PVB was superior in every clinical metric examined: time to extubation (3 vs. 1 hr, P < 0.001), recovery of bowel function (3 vs. 2 days, P = 0.002), recovery of baseline physical activity (4 vs. 2 days, P = 0.019), and length of stay (5 vs. 3 days, P < 0.001).
    Conclusions: Continuous paravertebral block provides better pain management with significantly decreased opioid requirements in the postoperative period compared to GA-alone for patients undergoing elective retroperitoneal AAA repair.
    Language English
    Publishing date 2023-07-15
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 1027366-9
    ISSN 1615-5947 ; 0890-5096
    ISSN (online) 1615-5947
    ISSN 0890-5096
    DOI 10.1016/j.avsg.2023.06.026
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Molecular Rapid Diagnostics Improve Time to Effective Therapy and Survival in Patients with Vancomycin-Resistant

    Bandy, Sarah M / Jackson, Christopher B / Black, Cody A / Godinez, William / Gawrys, Gerard W / Lee, Grace C

    Antibiotics (Basel, Switzerland)

    2023  Volume 12, Issue 2

    Abstract: Delays in appropriate antibiotic therapy are a key determinant for deleterious outcomes among patients with vancomycin-resistant Enterococcus (VRE) bloodstream infections (BSIs). This was a multi-center pre/post-implementation study, assessing the impact ...

    Abstract Delays in appropriate antibiotic therapy are a key determinant for deleterious outcomes among patients with vancomycin-resistant Enterococcus (VRE) bloodstream infections (BSIs). This was a multi-center pre/post-implementation study, assessing the impact of a molecular rapid diagnostic test (Verigene
    Language English
    Publishing date 2023-01-19
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2681345-2
    ISSN 2079-6382
    ISSN 2079-6382
    DOI 10.3390/antibiotics12020210
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Mechanisms of SARS-CoV-2 entry into cells.

    Jackson, Cody B / Farzan, Michael / Chen, Bing / Choe, Hyeryun

    Nature reviews. Molecular cell biology

    2021  Volume 23, Issue 1, Page(s) 3–20

    Abstract: The unprecedented public health and economic impact of the COVID-19 pandemic caused by infection with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has been met with an equally unprecedented scientific response. Much of this response has ... ...

    Abstract The unprecedented public health and economic impact of the COVID-19 pandemic caused by infection with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has been met with an equally unprecedented scientific response. Much of this response has focused, appropriately, on the mechanisms of SARS-CoV-2 entry into host cells, and in particular the binding of the spike (S) protein to its receptor, angiotensin-converting enzyme 2 (ACE2), and subsequent membrane fusion. This Review provides the structural and cellular foundations for understanding the multistep SARS-CoV-2 entry process, including S protein synthesis, S protein structure, conformational transitions necessary for association of the S protein with ACE2, engagement of the receptor-binding domain of the S protein with ACE2, proteolytic activation of the S protein, endocytosis and membrane fusion. We define the roles of furin-like proteases, transmembrane protease, serine 2 (TMPRSS2) and cathepsin L in these processes, and delineate the features of ACE2 orthologues in reservoir animal species and S protein adaptations that facilitate efficient human transmission. We also examine the utility of vaccines, antibodies and other potential therapeutics targeting SARS-CoV-2 entry mechanisms. Finally, we present key outstanding questions associated with this critical process.
    MeSH term(s) Animals ; Evolution, Molecular ; Humans ; Membrane Fusion ; Peptidyl-Dipeptidase A/metabolism ; SARS-CoV-2/immunology ; SARS-CoV-2/physiology ; Viral Proteins/chemistry ; Viral Proteins/metabolism ; Virus Internalization
    Chemical Substances Viral Proteins ; Peptidyl-Dipeptidase A (EC 3.4.15.1)
    Language English
    Publishing date 2021-10-05
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 2031313-5
    ISSN 1471-0080 ; 1471-0072
    ISSN (online) 1471-0080
    ISSN 1471-0072
    DOI 10.1038/s41580-021-00418-x
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: A new methodology for measuring the enthalpies of mixing and heat capacities of molten chloride salts using high temperature drop calorimetry.

    Strzelecki, Andrew C / Cockreham, Cody B / Parker, S Scott / Mann, Shane C / Lhermitte, Charles / Wu, Di / Guo, Xiaofeng / Monreal, Marisa / Jackson, J Matt / Mitchell, Jeremy / Boukhalfa, Hakim / Xu, Hongwu

    The Review of scientific instruments

    2024  Volume 95, Issue 1

    Abstract: Molten salt reactors (MSRs) are a promising alternative to conventional nuclear reactors as they may offer more efficient fuel utilization, lower waste generation, and improved safety. The state of knowledge of the properties of liquid salts is far from ... ...

    Abstract Molten salt reactors (MSRs) are a promising alternative to conventional nuclear reactors as they may offer more efficient fuel utilization, lower waste generation, and improved safety. The state of knowledge of the properties of liquid salts is far from complete. In order to develop the MSR concept, it is essential to develop a fundamental understanding of the thermodynamic properties, including the heat capacities (Cp) and enthalpies of mixing (ΔHmix), of molten salts at MSR operating conditions. Historically, the Cp values of molten salts were determined by drop-calorimetry or differential scanning calorimetry, whereas their ΔHmix values were typically measured using specialized high temperature calorimeters. In this work, a new methodology for measuring both the Cp and the ΔHmix of molten chloride salts was developed. This novel method involves sealing a chloride salt sample in a nickel capsule and performing conventional transposed temperature drop calorimetry using a commercially available Setaram AlexSYS-800 Tian-Calvet twin microcalorimeter. This methodology may be applied to calorimetric measurements of more complex salt mixtures, especially mixtures containing actinides and fission products.
    Language English
    Publishing date 2024-01-18
    Publishing country United States
    Document type Journal Article
    ZDB-ID 209865-9
    ISSN 1089-7623 ; 0034-6748
    ISSN (online) 1089-7623
    ISSN 0034-6748
    DOI 10.1063/5.0144910
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Effect of mRNA-LNP components of two globally-marketed COVID-19 vaccines on efficacy and stability.

    Zhang, Lizhou / More, Kunal R / Ojha, Amrita / Jackson, Cody B / Quinlan, Brian D / Li, Hao / He, Wenhui / Farzan, Michael / Pardi, Norbert / Choe, Hyeryun

    NPJ vaccines

    2023  Volume 8, Issue 1, Page(s) 156

    Abstract: During the COVID-19 pandemic, Pfizer-BioNTech and Moderna successfully developed nucleoside-modified mRNA lipid nanoparticle (LNP) vaccines. SARS-CoV-2 spike protein expressed by those vaccines are identical in amino acid sequence, but several key ... ...

    Abstract During the COVID-19 pandemic, Pfizer-BioNTech and Moderna successfully developed nucleoside-modified mRNA lipid nanoparticle (LNP) vaccines. SARS-CoV-2 spike protein expressed by those vaccines are identical in amino acid sequence, but several key components are distinct. Here, we compared the effect of ionizable lipids, untranslated regions (UTRs), and nucleotide composition of the two vaccines, focusing on mRNA delivery, antibody generation, and long-term stability. We found that the ionizable lipid, SM-102, in Moderna's vaccine performs better than ALC-0315 in Pfizer-BioNTech's vaccine for intramuscular delivery of mRNA and antibody production in mice and long-term stability at 4 °C. Moreover, Pfizer-BioNTech's 5' UTR and Moderna's 3' UTR outperform their counterparts in their contribution to transgene expression in mice. We further found that varying N1-methylpseudouridine content at the wobble position of mRNA has little effect on vaccine efficacy. These findings may contribute to the further improvement of nucleoside-modified mRNA-LNP vaccines and therapeutics.
    Language English
    Publishing date 2023-10-11
    Publishing country England
    Document type Journal Article
    ISSN 2059-0105
    ISSN (online) 2059-0105
    DOI 10.1038/s41541-023-00751-6
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Functional importance of the D614G mutation in the SARS-CoV-2 spike protein.

    Jackson, Cody B / Zhang, Lizhou / Farzan, Michael / Choe, Hyeryun

    Biochemical and biophysical research communications

    2020  Volume 538, Page(s) 108–115

    Abstract: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is an enveloped virus which binds its cellular receptor angiotensin-converting enzyme 2 (ACE2) and enters hosts cells through the action of its spike (S) glycoprotein displayed on the surface ... ...

    Abstract Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is an enveloped virus which binds its cellular receptor angiotensin-converting enzyme 2 (ACE2) and enters hosts cells through the action of its spike (S) glycoprotein displayed on the surface of the virion. Compared to the reference strain of SARS-CoV-2, the majority of currently circulating isolates possess an S protein variant characterized by an aspartic acid-to-glycine substitution at amino acid position 614 (D614G). Residue 614 lies outside the receptor binding domain (RBD) and the mutation does not alter the affinity of monomeric S protein for ACE2. However, S(G614), compared to S(D614), mediates more efficient ACE2-mediated transduction of cells by S-pseudotyped vectors and more efficient infection of cells and animals by live SARS-CoV-2. This review summarizes and synthesizes the epidemiological and functional observations of the D614G spike mutation, with focus on the biochemical and cell-biological impact of this mutation and its consequences for S protein function. We further discuss the significance of these recent findings in the context of the current global pandemic.
    MeSH term(s) Amino Acid Substitution/genetics ; Aspartic Acid/genetics ; Binding Sites/genetics ; COVID-19/virology ; Glycine/genetics ; Humans ; Mutation ; Protein Domains/genetics ; SARS-CoV-2/genetics ; Spike Glycoprotein, Coronavirus/chemistry ; Spike Glycoprotein, Coronavirus/genetics
    Chemical Substances Spike Glycoprotein, Coronavirus ; spike protein, SARS-CoV-2 ; Aspartic Acid (30KYC7MIAI) ; Glycine (TE7660XO1C)
    Keywords covid19
    Language English
    Publishing date 2020-11-13
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Review
    ZDB-ID 205723-2
    ISSN 1090-2104 ; 0006-291X ; 0006-291X
    ISSN (online) 1090-2104 ; 0006-291X
    ISSN 0006-291X
    DOI 10.1016/j.bbrc.2020.11.026
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Clinical Antiviral Drug Arbidol Inhibits Infection by SARS-CoV-2 and Variants through Direct Binding to the Spike Protein.

    Shuster, Anton / Pechalrieu, Dany / Jackson, Cody B / Abegg, Daniel / Choe, Hyeryun / Adibekian, Alexander

    ACS chemical biology

    2021  Volume 16, Issue 12, Page(s) 2845–2851

    Abstract: ... strain B.1.1.7) and South Africa (strain B.1.351). We pinpoint the ARB binding site on the S protein ...

    Abstract Arbidol (ARB) is a broad-spectrum antiviral drug approved in Russia and China for the treatment of influenza. ARB was tested in patients as a drug candidate for the treatment at the early onset of COVID-19 caused by the novel severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Despite promising clinical results and multiple ongoing trials, preclinical data are lacking and the molecular mechanism of action of ARB against SARS-CoV-2 remains unknown. Here, we demonstrate that ARB binds to the spike viral fusion glycoprotein of the SARS-CoV-2 Wuhan strain as well as its more virulent variants from the United Kingdom (strain B.1.1.7) and South Africa (strain B.1.351). We pinpoint the ARB binding site on the S protein to the S2 membrane fusion domain and use an infection assay with Moloney murine leukemia virus (MLV) pseudoviruses (PVs) pseudotyped with the S proteins of the Wuhan strain and the new variants to show that this interaction is sufficient for the viral cell entry inhibition by ARB. Finally, our experiments reveal that the ARB interaction leads to a significant destabilization and eventual lysosomal degradation of the S protein in cells. Collectively, our results identify ARB as the first clinically approved small molecule drug binder of the SARS-CoV-2 S protein and place ARB among the more promising drug candidates for COVID-19.
    MeSH term(s) A549 Cells ; Animals ; Antiviral Agents/metabolism ; Antiviral Agents/pharmacology ; Binding Sites ; Chlorocebus aethiops ; HEK293 Cells ; Humans ; Indoles/metabolism ; Indoles/pharmacology ; Lysosomes/metabolism ; Mutation ; Protein Domains ; Proteolysis/drug effects ; SARS-CoV-2/drug effects ; Spike Glycoprotein, Coronavirus/chemistry ; Spike Glycoprotein, Coronavirus/genetics ; Spike Glycoprotein, Coronavirus/metabolism ; Vero Cells ; Virus Internalization/drug effects
    Chemical Substances Antiviral Agents ; Indoles ; Spike Glycoprotein, Coronavirus ; spike protein, SARS-CoV-2 ; umifenovir (93M09WW4RU)
    Language English
    Publishing date 2021-11-18
    Publishing country United States
    Document type Journal Article
    ISSN 1554-8937
    ISSN (online) 1554-8937
    DOI 10.1021/acschembio.1c00756
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Functional importance of the D614G mutation in the SARS-CoV-2 spike protein

    Jackson, Cody B. / Zhang, Lizhou / Farzan, Michael / Choe, Hyeryun

    Biochemical and Biophysical Research Communications ; ISSN 0006-291X

    2020  

    Keywords Biophysics ; Cell Biology ; Biochemistry ; Molecular Biology ; covid19
    Language English
    Publisher Elsevier BV
    Publishing country us
    Document type Article ; Online
    DOI 10.1016/j.bbrc.2020.11.026
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Article: Functional importance of the D614G mutation in the SARS-CoV-2 spike protein

    Jackson, Cody B. / Zhang, Lizhou Farzan Michael Choe Hyeryun

    Biochemical and Biophysical Research Communications

    Abstract: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is an enveloped virus which binds its cellular receptor angiotensin-converting enzyme 2 (ACE2) and enters hosts cells through the action of its spike (S) glycoprotein displayed on the surface ... ...

    Abstract Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is an enveloped virus which binds its cellular receptor angiotensin-converting enzyme 2 (ACE2) and enters hosts cells through the action of its spike (S) glycoprotein displayed on the surface of the virion Compared to the reference strain of SARS-CoV-2, the majority of currently circulating isolates possess an S protein variant characterized by an aspartic acid-to-glycine substitution at amino acid position 614 (D614G) Residue 614 lies outside the receptor binding domain (RBD) and the mutation does not alter the affinity of monomeric S protein for ACE2 However, S(G614), compared to S(D614), mediates more efficient ACE2-mediated transduction of cells by S-pseudotyped vectors and more efficient infection of cells and animals by live SARS-CoV-2 This review summarizes and synthesizes the epidemiological and functional observations of the D614G spike mutation, with focus on the biochemical and cell-biological impact of this mutation and its consequences for S protein function We further discuss the significance of these recent findings in the context of the current global pandemic
    Keywords covid19
    Publisher WHO
    Document type Article
    Note WHO #Covidence: #921831
    Database COVID19

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  10. Article: The D614G mutation in the SARS-CoV-2 spike protein reduces S1 shedding and increases infectivity.

    Zhang, Lizhou / Jackson, Cody B / Mou, Huihui / Ojha, Amrita / Rangarajan, Erumbi S / Izard, Tina / Farzan, Michael / Choe, Hyeryun

    bioRxiv : the preprint server for biology

    2020  

    Abstract: SARS coronavirus 2 (SARS-CoV-2) isolates encoding a D614G mutation in the viral spike (S) protein predominate over time in locales where it is found, implying that this change enhances viral transmission. We therefore compared the functional properties ... ...

    Abstract SARS coronavirus 2 (SARS-CoV-2) isolates encoding a D614G mutation in the viral spike (S) protein predominate over time in locales where it is found, implying that this change enhances viral transmission. We therefore compared the functional properties of the S proteins with aspartic acid (S
    Keywords covid19
    Language English
    Publishing date 2020-06-12
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2020.06.12.148726
    Database MEDical Literature Analysis and Retrieval System OnLINE

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