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  1. Article ; Online: The diversity and clinical implications of genetic variants influencing clopidogrel bioactivation and response in the Emirati population.

    Khasawneh, Lubna Q / Alsafar, Habiba / Alblooshi, Hiba / Allam, Mushal / Patrinos, George P / Ali, Bassam R

    Human genomics

    2024  Volume 18, Issue 1, Page(s) 2

    Abstract: Background: Clopidogrel is a widely prescribed prodrug that requires activation via specific pharmacogenes to exert its anti-platelet function. Genetic variations in the genes encoding its transporter, metabolizing enzymes, and target receptor lead to ... ...

    Abstract Background: Clopidogrel is a widely prescribed prodrug that requires activation via specific pharmacogenes to exert its anti-platelet function. Genetic variations in the genes encoding its transporter, metabolizing enzymes, and target receptor lead to variability in its activation and platelet inhibition and, consequently, its efficacy. This variability increases the risk of secondary cardiovascular events, and therefore, some variations have been utilized as genetic biomarkers when prescribing clopidogrel.
    Methods: Our study examined clopidogrel-related genes (CYP2C19, ABCB1, PON1, and P2Y12R) in a cohort of 298 healthy Emiratis individuals. The study used whole exome sequencing (WES) data to comprehensively analyze pertinent variations of these genes, including their minor allele frequencies, haplotype distribution, and their resulting phenotypes.
    Results: Our data shows that approximately 37% (n = 119) of the cohort are likely to benefit from the use of alternative anti-platelet drugs due to their classification as intermediate or poor CYP2C19 metabolizers. Additionally, more than 50% of the studied cohort exhibited variants in ABCB1, PON1, and P2YR12 genes, potentially influencing clopidogrel's transport, enzymatic clearance, and receptor performance.
    Conclusions: Recognizing these alleles and genotype frequencies may explain the clinical differences in medication response across different ethnicities and predict adverse events. Our findings underscore the need to consider genetic variations in prescribing clopidogrel, with potential implications for implementing personalized anti-platelet therapy among Emiratis based on their genetic profiles.
    MeSH term(s) Humans ; Clopidogrel/therapeutic use ; Platelet Aggregation Inhibitors/therapeutic use ; Platelet Aggregation Inhibitors/pharmacology ; Cytochrome P-450 CYP2C19/genetics ; Ticlopidine/therapeutic use ; Ticlopidine/pharmacology ; United Arab Emirates ; Aryl Hydrocarbon Hydroxylases/genetics ; Genotype ; Aryldialkylphosphatase/genetics
    Chemical Substances Clopidogrel (A74586SNO7) ; Platelet Aggregation Inhibitors ; Cytochrome P-450 CYP2C19 (EC 1.14.14.1) ; Ticlopidine (OM90ZUW7M1) ; Aryl Hydrocarbon Hydroxylases (EC 1.14.14.1) ; PON1 protein, human (EC 3.1.8.1) ; Aryldialkylphosphatase (EC 3.1.8.1)
    Language English
    Publishing date 2024-01-03
    Publishing country England
    Document type Journal Article
    ZDB-ID 2147618-4
    ISSN 1479-7364 ; 1479-7364
    ISSN (online) 1479-7364
    ISSN 1479-7364
    DOI 10.1186/s40246-023-00568-3
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Spectrum of genetic variants in bilateral sensorineural hearing loss.

    Ali, Amanat / Tabouni, Mohammed / Kizhakkedath, Praseetha / Baydoun, Ibrahim / Allam, Mushal / John, Anne / Busafared, Faiza / Alnuaimi, Ayesha / Al-Jasmi, Fatma / Alblooshi, Hiba

    Frontiers in genetics

    2024  Volume 15, Page(s) 1314535

    Abstract: Background: ...

    Abstract Background:
    Language English
    Publishing date 2024-02-12
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2606823-0
    ISSN 1664-8021
    ISSN 1664-8021
    DOI 10.3389/fgene.2024.1314535
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: A Genomic Snapshot of Antibiotic-Resistant

    Shobo, Christiana O / Amoako, Daniel G / Allam, Mushal / Ismail, Arshad / Essack, Sabiha Y / Bester, Linda A

    Global health, epidemiology and genomics

    2023  Volume 2023, Page(s) 6639983

    Abstract: Enterococci are among the most common opportunistic hospital pathogens. This study used whole-genome sequencing (WGS) and bioinformatics to determine the antibiotic resistome, mobile genetic elements, clone and phylogenetic relationship ... ...

    Abstract Enterococci are among the most common opportunistic hospital pathogens. This study used whole-genome sequencing (WGS) and bioinformatics to determine the antibiotic resistome, mobile genetic elements, clone and phylogenetic relationship of
    MeSH term(s) Anti-Bacterial Agents/pharmacology ; South Africa/epidemiology ; Phylogeny ; Microbial Sensitivity Tests ; Genomics ; Hospitals, Public
    Chemical Substances Anti-Bacterial Agents
    Language English
    Publishing date 2023-06-12
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ISSN 2054-4200
    ISSN (online) 2054-4200
    DOI 10.1155/2023/6639983
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Genome Analysis of ESBL-Producing

    Founou, Luria Leslie / Founou, Raspail Carrel / Allam, Mushal / Ismail, Arshad / Essack, Sabiha Yusuf

    Pathogens (Basel, Switzerland)

    2022  Volume 11, Issue 7

    Abstract: The resistome, virulome and mobilome of extended spectrum ß-lactamase (ESBL)- ... ...

    Abstract The resistome, virulome and mobilome of extended spectrum ß-lactamase (ESBL)-producing
    Language English
    Publishing date 2022-07-07
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2695572-6
    ISSN 2076-0817
    ISSN 2076-0817
    DOI 10.3390/pathogens11070776
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Extreme resistance to the novel siderophore-cephalosporin cefiderocol in an extensively drug-resistant Klebsiella pneumoniae strain causing fatal pneumonia with sepsis: genomic analysis and synergistic combinations for resistance reversal.

    Daoud, Land / Allam, Mushal / Collyns, Timothy / Ghazawi, Akela / Saleem, Aqeel / Al-Marzooq, Farah

    European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology

    2023  Volume 42, Issue 11, Page(s) 1395–1400

    Abstract: Cefiderocol (CFDC) is the first-in-class siderophore-cephalosporin. Klebsiella pneumoniae strain that is extremely resistant to CFDC (MIC: 256 µg/ml) was isolated for the first time in the United Arab Emirates from a patient with pneumonia and sepsis. It ...

    Abstract Cefiderocol (CFDC) is the first-in-class siderophore-cephalosporin. Klebsiella pneumoniae strain that is extremely resistant to CFDC (MIC: 256 µg/ml) was isolated for the first time in the United Arab Emirates from a patient with pneumonia and sepsis. It belonged to sequence-type 14 (ST14), with a novel core genome ST. Resistance was driven by the co-expression of β-lactamases (bla
    MeSH term(s) Humans ; Klebsiella pneumoniae ; Anti-Bacterial Agents/pharmacology ; Anti-Bacterial Agents/therapeutic use ; Siderophores/therapeutic use ; Siderophores/pharmacology ; beta-Lactamase Inhibitors/pharmacology ; beta-Lactamase Inhibitors/therapeutic use ; Drug Resistance, Multiple, Bacterial/genetics ; Cephalosporins/pharmacology ; Cephalosporins/therapeutic use ; Sepsis/drug therapy ; Genomics ; Cefiderocol
    Chemical Substances Anti-Bacterial Agents ; Siderophores ; beta-Lactamase Inhibitors ; Cephalosporins
    Language English
    Publishing date 2023-10-13
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 603155-9
    ISSN 1435-4373 ; 0934-9723 ; 0722-2211
    ISSN (online) 1435-4373
    ISSN 0934-9723 ; 0722-2211
    DOI 10.1007/s10096-023-04671-0
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: The diversity and clinical implications of genetic variants influencing clopidogrel bioactivation and response in the Emirati population

    Lubna Q. Khasawneh / Habiba Alsafar / Hiba Alblooshi / Mushal Allam / George P. Patrinos / Bassam R. Ali

    Human Genomics, Vol 18, Iss 1, Pp 1-

    2024  Volume 12

    Abstract: Abstract Background Clopidogrel is a widely prescribed prodrug that requires activation via specific pharmacogenes to exert its anti-platelet function. Genetic variations in the genes encoding its transporter, metabolizing enzymes, and target receptor ... ...

    Abstract Abstract Background Clopidogrel is a widely prescribed prodrug that requires activation via specific pharmacogenes to exert its anti-platelet function. Genetic variations in the genes encoding its transporter, metabolizing enzymes, and target receptor lead to variability in its activation and platelet inhibition and, consequently, its efficacy. This variability increases the risk of secondary cardiovascular events, and therefore, some variations have been utilized as genetic biomarkers when prescribing clopidogrel. Methods Our study examined clopidogrel-related genes (CYP2C19, ABCB1, PON1, and P2Y12R) in a cohort of 298 healthy Emiratis individuals. The study used whole exome sequencing (WES) data to comprehensively analyze pertinent variations of these genes, including their minor allele frequencies, haplotype distribution, and their resulting phenotypes. Results Our data shows that approximately 37% (n = 119) of the cohort are likely to benefit from the use of alternative anti-platelet drugs due to their classification as intermediate or poor CYP2C19 metabolizers. Additionally, more than 50% of the studied cohort exhibited variants in ABCB1, PON1, and P2YR12 genes, potentially influencing clopidogrel’s transport, enzymatic clearance, and receptor performance. Conclusions Recognizing these alleles and genotype frequencies may explain the clinical differences in medication response across different ethnicities and predict adverse events. Our findings underscore the need to consider genetic variations in prescribing clopidogrel, with potential implications for implementing personalized anti-platelet therapy among Emiratis based on their genetic profiles.
    Keywords Clopidogrel ; Genetic variants ; Pharmacogenomics ; CYP2C19 ; ABCB1 ; PON1 ; Medicine ; R ; Genetics ; QH426-470
    Subject code 616
    Language English
    Publishing date 2024-01-01T00:00:00Z
    Publisher BMC
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  7. Article ; Online: Metagenomics insights into microbiome and antibiotic resistance genes from free living amoeba in chlorinated wastewater effluents.

    Conco-Biyela, Thobela / Malla, Muneer Ahmad / Olatunji Awolusi, Oluyemi / Allam, Mushal / Ismail, Arshad / Stenström, Thor A / Bux, Faizal / Kumari, Sheena

    International journal of hygiene and environmental health

    2024  Volume 258, Page(s) 114345

    Abstract: Free living amoeba (FLA) are among the organisms commonly found in wastewater and are well-established hosts for diverse microbial communities. Despite its clinical significance, there is little knowledge on the FLA microbiome and resistome, with ... ...

    Abstract Free living amoeba (FLA) are among the organisms commonly found in wastewater and are well-established hosts for diverse microbial communities. Despite its clinical significance, there is little knowledge on the FLA microbiome and resistome, with previous studies relying mostly on conventional approaches. In this study we comprehensively analyzed the microbiome, antibiotic resistome and virulence factors (VFs) within FLA isolated from final treated effluents of two wastewater treatment plants (WWTPs) using shotgun metagenomics. Acanthamoeba has been identified as the most common FLA, followed by Entamoeba. The bacterial diversity showed no significant difference (p > 0.05) in FLA microbiomes obtained from the two WWTPs. At phylum level, the most dominant taxa were Proteobacteria, followed by Firmicutes and Actinobacteria. The most abundant genera identified were Enterobacter followed by Citrobacter, Paenibacillus, and Cupriavidus. The latter three genera are reported here for the first time in Acanthamoeba. In total, we identified 43 types of ARG conferring resistance to cephalosporins, phenicol, streptomycin, trimethoprim, quinolones, cephalosporins, tigecycline, rifamycin, and kanamycin. Similarly, a variety of VFs in FLA metagenomes were detected which included flagellar proteins, Type IV pili twitching motility proteins (pilH and rpoN), alginate biosynthesis genes AlgI, AlgG, AlgD and AlgW and Type VI secretion system proteins and general secretion pathway proteins (tssM, tssA, tssL, tssK, tssJ, fha, tssG, tssF, tssC and tssB, gspC, gspE, gspD, gspF, gspG, gspH, gspI, gspJ, gspK, and gspM). To the best of our knowledge, this is the first study of its kind to examine both the microbiomes and resistome in FLA, as well as their potential pathogenicity in treated effluents. Additionally, this study showed that FLA can host a variety of potentially pathogenic bacteria including Paenibacillus, and Cupriavidus that had not previously been reported, indicating that their relationship may play a role in the spread and persistence of antibiotic resistant bacteria (ARBs) and antibiotic resistance genes (ARGs) as well as the evolution of novel pathogens.
    MeSH term(s) Wastewater ; Anti-Bacterial Agents/pharmacology ; Amoeba/microbiology ; Angiotensin Receptor Antagonists ; Angiotensin-Converting Enzyme Inhibitors ; Microbiota/genetics ; Bacteria ; Genes, Bacterial ; Drug Resistance, Microbial/genetics ; Cephalosporins
    Chemical Substances Wastewater ; Anti-Bacterial Agents ; Angiotensin Receptor Antagonists ; Angiotensin-Converting Enzyme Inhibitors ; Cephalosporins
    Language English
    Publishing date 2024-03-11
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 2009176-X
    ISSN 1618-131X ; 1438-4639
    ISSN (online) 1618-131X
    ISSN 1438-4639
    DOI 10.1016/j.ijheh.2024.114345
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Whole-genome sequence data of a

    Elhassan, Mortada M O / Adam, Habiba B A / Fagir, Shaimaa S A O / Mohamed, Sofia B / Khaier, Mona A M / Abdulaziz, Romisa / Ismail, Arshad / Allam, Mushal

    Data in brief

    2023  Volume 47, Page(s) 109005

    Abstract: Salmonella ... ...

    Abstract Salmonella enterica
    Language English
    Publishing date 2023-02-23
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 2786545-9
    ISSN 2352-3409 ; 2352-3409
    ISSN (online) 2352-3409
    ISSN 2352-3409
    DOI 10.1016/j.dib.2023.109005
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article: Marked Effects of Larval Salt Exposure on the Life History and Gut Microbiota of the Malaria Vector

    Singh, Ashmika / Patel, Nashrin F / Allam, Mushal / Chan, Wai-Yin / Mohale, Thabo / Ismail, Arshad / Oliver, Shüné V

    Insects

    2022  Volume 13, Issue 12

    Abstract: Anopheles ... ...

    Abstract Anopheles merus
    Language English
    Publishing date 2022-12-16
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2662247-6
    ISSN 2075-4450
    ISSN 2075-4450
    DOI 10.3390/insects13121165
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article: Whole-Genome Sequencing of a Colistin-Resistant

    Nogbou, Noel-David / Ramashia, Mbudzeni / Nkawane, Granny Marumo / Allam, Mushal / Obi, Chikwelu Lawrence / Musyoki, Andrew Munyalo

    Antibiotics (Basel, Switzerland)

    2022  Volume 11, Issue 5

    Abstract: Background: Acinetobacter baumannii: Methods: An antimicrobial susceptibility test, conventional PCR, quantitative real-time PCR, phenotypic evaluation of the efflux pump, and whole-genome sequencing and analysis were performed on the isolate.: ... ...

    Abstract Background: Acinetobacter baumannii
    Methods: An antimicrobial susceptibility test, conventional PCR, quantitative real-time PCR, phenotypic evaluation of the efflux pump, and whole-genome sequencing and analysis were performed on the isolate.
    Results: The antimicrobial susceptibility pattern revealed a resistance to piperacillin/tazobactam, ceftazidime, cefepime, cefotaxime/ceftriaxone, imipenem, meropenem, gentamycin, ciprofloxacin, trimethoprim/sulfamethoxazole, tigecycline, and colistin. A broth microdilution test confirmed the colistin resistance. Conventional PCR and quantitative real-time PCR investigations revealed the presence of
    Conclusions: The mosaic of the virulence factors coupled with the resistance-associated genes and the phenotypic resistance profile highlights the risk that this strain is at this South African tertiary health facility.
    Language English
    Publishing date 2022-04-28
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2681345-2
    ISSN 2079-6382
    ISSN 2079-6382
    DOI 10.3390/antibiotics11050594
    Database MEDical Literature Analysis and Retrieval System OnLINE

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