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  1. Article ; Online: Clinical and Molecular Spectrum Associated with COL6A3 c.7447A>G p.(Lys2483Glu) Variant: Elucidating its Role in Collagen VI-related Myopathies.

    Villar-Quiles, Rocío N / Donkervoort, Sandra / de Becdelièvre, Alix / Gartioux, Corine / Jobic, Valérie / Foley, A Reghan / McCarty, Riley M / Hu, Ying / Menassa, Rita / Michel, Laurence / Gousse, Gaelle / Lacour, Arnaud / Petiot, Philippe / Streichenberger, Nathalie / Choumert, Ariane / Declerck, Léa / Urtizberea, J A / Sole, Guilhem / Furby, Alain /
    Cérino, Matthieu / Krahn, Martin / Campana-Salort, Emmanuelle / Ferreiro, Ana / Eymard, Bruno / Bönnemann, Carsten G / Bharucha-Goebel, Diana / Sumner, Charlotte J / Connolly, Anne M / Richard, Pascale / Allamand, Valérie / Métay, Corinne / Stojkovic, Tanya

    Journal of neuromuscular diseases

    2021  Volume 8, Issue 4, Page(s) 633–645

    Abstract: ... with the frequent COL6A3 missense variant c.7447A>G (p.Lys2483Glu).: Methods: We report the clinical and ... we postulate that the COL6A3 variant c.7447A>G may act as a modulator of the clinical phenotype ...

    Abstract Background: Dominant and recessive autosomal pathogenic variants in the three major genes (COL6A1-A2-A3) encoding the extracellular matrix protein collagen VI underlie a group of myopathies ranging from early-onset severe conditions (Ullrich congenital muscular dystrophy) to milder forms maintaining independent ambulation (Bethlem myopathy). Diagnosis is based on the combination of clinical presentation, muscle MRI, muscle biopsy, analysis of collagen VI secretion, and COL6A1-A2-A3 genetic analysis, the interpretation of which can be challenging.
    Objective: To refine the phenotypical spectrum associated with the frequent COL6A3 missense variant c.7447A>G (p.Lys2483Glu).
    Methods: We report the clinical and molecular findings in 16 patients: 12 patients carrying this variant in compound heterozygosity with another COL6A3 variant, and four homozygous patients.
    Results: Patients carrying this variant in compound heterozygosity with a truncating COL6A3 variant exhibit a phenotype consistent with COL6-related myopathies (COL6-RM), with joint contractures, proximal weakness and skin abnormalities. All remain ambulant in adulthood and only three have mild respiratory involvement. Most show typical muscle MRI findings. In five patients, reduced collagen VI secretion was observed in skin fibroblasts cultures. All tested parents were unaffected heterozygous carriers. Conversely, two out of four homozygous patients did not present with the classical COL6-RM clinical and imaging findings. Collagen VI immunolabelling on cultured fibroblasts revealed rather normal secretion in one and reduced secretion in another. Muscle biopsy from one homozygous patient showed myofibrillar disorganization and rimmed vacuoles.
    Conclusions: In light of our results, we postulate that the COL6A3 variant c.7447A>G may act as a modulator of the clinical phenotype. Thus, in patients with a typical COL6-RM phenotype, a second variant must be thoroughly searched for, while for patients with atypical phenotypes further investigations should be conducted to exclude alternative causes. This works expands the clinical and molecular spectrum of COLVI-related myopathies.
    MeSH term(s) Adolescent ; Adult ; Aged ; Child ; Child, Preschool ; Collagen Type VI/genetics ; Female ; Heterozygote ; Humans ; Magnetic Resonance Imaging ; Male ; Middle Aged ; Muscle, Skeletal/pathology ; Muscular Diseases/genetics ; Muscular Dystrophies/genetics ; Mutation ; Phenotype ; Procollagen/genetics ; Young Adult
    Chemical Substances COL6A3 protein, human ; Collagen Type VI ; Procollagen
    Language English
    Publishing date 2021-03-22
    Publishing country Netherlands
    Document type Journal Article
    ISSN 2214-3602
    ISSN (online) 2214-3602
    DOI 10.3233/JND-200577
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: The human mitochondrial transcription factor A is a versatile G-quadruplex binding protein.

    Lyonnais, Sébastien / Tarrés-Solé, Aleix / Rubio-Cosials, Anna / Cuppari, Anna / Brito, Reicy / Jaumot, Joaquim / Gargallo, Raimundo / Vilaseca, Marta / Silva, Cristina / Granzhan, Anton / Teulade-Fichou, Marie-Paule / Eritja, Ramon / Solà, Maria

    Scientific reports

    2017  Volume 7, Page(s) 43992

    Abstract: The ability of the guanine-rich strand of the human mitochondrial DNA (mtDNA) to form G-quadruplex ... conserved sequence block II (CSBII). Biochemical characterization shows that TFAM binding to G4 depends on both the G ...

    Abstract The ability of the guanine-rich strand of the human mitochondrial DNA (mtDNA) to form G-quadruplex structures (G4s) has been recently highlighted, suggesting potential functions in mtDNA replication initiation and mtDNA stability. G4 structures in mtDNA raise the question of their recognition by factors associated with the mitochondrial nucleoid. The mitochondrial transcription factor A (TFAM), a high-mobility group (HMG)-box protein, is the major binding protein of human mtDNA and plays a critical role in its expression and maintenance. HMG-box proteins are pleiotropic sensors of DNA structural alterations. Thus, we investigated and uncovered a surprising ability of TFAM to bind to DNA or RNA G4 with great versatility, showing an affinity similar than to double-stranded DNA. The recognition of G4s by endogenous TFAM was detected in mitochondrial extracts by pull-down experiments using a G4-DNA from the mtDNA conserved sequence block II (CSBII). Biochemical characterization shows that TFAM binding to G4 depends on both the G-quartets core and flanking single-stranded overhangs. Additionally, it shows a structure-specific binding mode that differs from B-DNA, including G4-dependent TFAM multimerization. These TFAM-G4 interactions suggest functional recognition of G4s in the mitochondria.
    MeSH term(s) DNA/metabolism ; DNA, Mitochondrial/metabolism ; DNA-Binding Proteins/metabolism ; G-Quadruplexes ; HeLa Cells ; Humans ; Mitochondrial Proteins/metabolism ; Protein Binding ; RNA/metabolism ; Transcription Factors/metabolism
    Chemical Substances DNA, Mitochondrial ; DNA-Binding Proteins ; Mitochondrial Proteins ; TFAM protein, human ; Transcription Factors ; RNA (63231-63-0) ; DNA (9007-49-2)
    Language English
    Publishing date 2017-03-09
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/srep43992
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: m.3243A > G-Induced Mitochondrial Dysfunction Impairs Human Neuronal Development and Reduces Neuronal Network Activity and Synchronicity.

    Klein Gunnewiek, Teun M / Van Hugte, Eline J H / Frega, Monica / Guardia, Gemma Solé / Foreman, Katharina / Panneman, Daan / Mossink, Britt / Linda, Katrin / Keller, Jason M / Schubert, Dirk / Cassiman, David / Rodenburg, Richard / Vidal Folch, Noemi / Oglesbee, Devin / Perales-Clemente, Ester / Nelson, Timothy J / Morava, Eva / Nadif Kasri, Nael / Kozicz, Tamas

    Cell reports

    2020  Volume 31, Issue 3, Page(s) 107538

    Abstract: ... function on an isogenic nuclear DNA background from patients with the common pathogenic m.3243A > G variant ...

    Abstract Epilepsy, intellectual and cortical sensory deficits, and psychiatric manifestations are the most frequent manifestations of mitochondrial diseases. How mitochondrial dysfunction affects neural structure and function remains elusive, mostly because of a lack of proper in vitro neuronal model systems with mitochondrial dysfunction. Leveraging induced pluripotent stem cell technology, we differentiated excitatory cortical neurons (iNeurons) with normal (low heteroplasmy) and impaired (high heteroplasmy) mitochondrial function on an isogenic nuclear DNA background from patients with the common pathogenic m.3243A > G variant of mitochondrial encephalomyopathy, lactic acidosis, and stroke-like episodes (MELAS). iNeurons with high heteroplasmy exhibited mitochondrial dysfunction, delayed neural maturation, reduced dendritic complexity, and fewer excitatory synapses. Micro-electrode array recordings of neuronal networks displayed reduced network activity and decreased synchronous network bursting. Impaired neuronal energy metabolism and compromised structural and functional integrity of neurons and neural networks could be the primary drivers of increased susceptibility to neuropsychiatric manifestations of mitochondrial disease.
    MeSH term(s) Animals ; Cell Differentiation ; Humans ; Mitochondria/metabolism ; Neurons/metabolism ; Rats ; Rats, Wistar
    Language English
    Publishing date 2020-04-27
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2649101-1
    ISSN 2211-1247 ; 2211-1247
    ISSN (online) 2211-1247
    ISSN 2211-1247
    DOI 10.1016/j.celrep.2020.107538
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Polypurine reverse-Hoogsteen (PPRH) oligonucleotides can form triplexes with their target sequences even under conditions where they fold into G-quadruplexes.

    Solé, Anna / Delagoutte, Emmanuelle / Ciudad, Carlos J / Noé, Véronique / Alberti, Patrizia

    Scientific reports

    2017  Volume 7, Page(s) 39898

    Abstract: Polypurine reverse-Hoogsteen (PPRH) oligonucleotides are non-modified DNA molecules composed of two mirror-symmetrical polypurine stretches linked by a five-thymidine loop. They can fold into reverse-Hoogsteen hairpins and bind to their polypyrimidine ... ...

    Abstract Polypurine reverse-Hoogsteen (PPRH) oligonucleotides are non-modified DNA molecules composed of two mirror-symmetrical polypurine stretches linked by a five-thymidine loop. They can fold into reverse-Hoogsteen hairpins and bind to their polypyrimidine target sequence by Watson-Crick bonds forming a three-stranded structure. They have been successfully used to knockdown gene expression and to repair single-point mutations in cells. In this work, we provide an in vitro characterization (UV and fluorescence spectroscopy, gel electrophoresis and nuclease assays) of the structure and stability of two repair-PPRH oligonucleotides and of the complexes they form with their single-stranded targets. We show that one PPRH oligonucleotide forms a hairpin, while the other folds, in potassium, into a guanine-quadruplex (G4). However, the hairpin-prone oligonucleotide does not form a triplex with its single-stranded target, while the G4-prone oligonucleotide converts from a G4 into a reverse-Hoogsteen hairpin forming a triplex with its target sequence. Our work proves, in particular, that folding of a PPRH oligonucleotide into a G4 does not necessarily impair sequence-specific DNA recognition by triplex formation. It also illustrates an original example of DNA structural conversion of a G4 into a reverse-Hoogsteen hairpin driven by triplex formation; this kind of conversion might occur at particular loci of genomic DNA.
    MeSH term(s) Amino Acid Motifs/genetics ; Base Sequence ; DNA/chemistry ; DNA/genetics ; DNA Repair ; Eye Proteins/genetics ; G-Quadruplexes ; Genome ; Homeodomain Proteins/genetics ; Nerve Tissue Proteins/genetics ; Nucleic Acid Conformation ; Oligonucleotides/genetics ; Point Mutation/genetics ; Spectrometry, Fluorescence ; Homeobox Protein SIX3
    Chemical Substances Eye Proteins ; Homeodomain Proteins ; Nerve Tissue Proteins ; Oligonucleotides ; triplex DNA ; DNA (9007-49-2)
    Language English
    Publishing date 2017-01-09
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/srep39898
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Corrigendum: The human mitochondrial transcription factor A is a versatile G-quadruplex binding protein.

    Lyonnais, Sébastien / Tarrés-Solé, Aleix / Rubio-Cosials, Anna / Cuppari, Anna / Brito, Reicy / Jaumot, Joaquim / Gargallo, Raimundo / Vilaseca, Marta / Silva, Cristina / Granzhan, Anton / Teulade-Fichou, Marie-Paule / Eritja, Ramon / Solà, Maria

    Scientific reports

    2017  Volume 7, Page(s) 45948

    Language English
    Publishing date 2017-04-06
    Publishing country England
    Document type Journal Article ; Published Erratum
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/srep45948
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: [The French Society of Myology celebrates its 20

    Solé, Guilhem

    Medecine sciences : M/S

    2023  Volume 39 Hors série n° 1, Page(s) 5

    Title translation La Société Française de Myologie fête ses vingt ans !
    Language French
    Publishing date 2023-11-17
    Publishing country France
    Document type Editorial
    ZDB-ID 632733-3
    ISSN 1958-5381 ; 0767-0974
    ISSN (online) 1958-5381
    ISSN 0767-0974
    DOI 10.1051/medsci/2023131
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: m.3243A > G-Induced Mitochondrial Dysfunction Impairs Human Neuronal Development and Reduces Neuronal Network Activity and Synchronicity

    Teun M. Klein Gunnewiek / Eline J.H. Van Hugte / Monica Frega / Gemma Solé Guardia / Katharina Foreman / Daan Panneman / Britt Mossink / Katrin Linda / Jason M. Keller / Dirk Schubert / David Cassiman / Richard Rodenburg / Noemi Vidal Folch / Devin Oglesbee / Ester Perales-Clemente / Timothy J. Nelson / Eva Morava / Nael Nadif Kasri / Tamas Kozicz

    Cell Reports, Vol 31, Iss 3, Pp - (2020)

    2020  

    Abstract: ... function on an isogenic nuclear DNA background from patients with the common pathogenic m.3243A > G variant ... neurons with high levels of m.3243A > G heteroplasmy, Klein Gunnewiek et al. show neuron-specific ... network activity, neurodevelopment, micro-electrode array, m.3243A > G ...

    Abstract Summary: Epilepsy, intellectual and cortical sensory deficits, and psychiatric manifestations are the most frequent manifestations of mitochondrial diseases. How mitochondrial dysfunction affects neural structure and function remains elusive, mostly because of a lack of proper in vitro neuronal model systems with mitochondrial dysfunction. Leveraging induced pluripotent stem cell technology, we differentiated excitatory cortical neurons (iNeurons) with normal (low heteroplasmy) and impaired (high heteroplasmy) mitochondrial function on an isogenic nuclear DNA background from patients with the common pathogenic m.3243A > G variant of mitochondrial encephalomyopathy, lactic acidosis, and stroke-like episodes (MELAS). iNeurons with high heteroplasmy exhibited mitochondrial dysfunction, delayed neural maturation, reduced dendritic complexity, and fewer excitatory synapses. Micro-electrode array recordings of neuronal networks displayed reduced network activity and decreased synchronous network bursting. Impaired neuronal energy metabolism and compromised structural and functional integrity of neurons and neural networks could be the primary drivers of increased susceptibility to neuropsychiatric manifestations of mitochondrial disease. : Using human-inducible-pluripotent-stem-cell-derived neurons with high levels of m.3243A > G heteroplasmy, Klein Gunnewiek et al. show neuron-specific mitochondrial dysfunction as well as structural and functional impairments ranging from reduced dendritic complexity and fewer synapses and mitochondria to reduced neuronal activity and impaired network synchronicity. Keywords: MELAS, mitochondrial disease, mitochondria, neuron, induced pluripotent stem cells, network activity, neurodevelopment, micro-electrode array, m.3243A > G
    Keywords Biology (General) ; QH301-705.5
    Subject code 571
    Language English
    Publishing date 2020-04-01T00:00:00Z
    Publisher Elsevier
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  8. Book ; Online: Association analysis of g.68G → A SNP in CAPN1 gene with carcass and meat quality traits in goose raised in organic dehesa

    Solé, Marina / Negro, Sara / Membrillo, Alberto / Peña, Francisco / Domenech, Valeriano / Verona, Juan Carlos / Rubí, Maria / Valera, Mercedes / Molina, Antonio

    eISSN: 2363-9822

    2018  

    Abstract: ... g.68G → A. This polymorphism was statistically associated with different carcass and meat quality ...

    Abstract Meat quality is an important concern for the poultry industry. Domestic geese products obtained from free-range systems usually have rather tough meat, and it is necessary to select them to improve meat tenderness. The relation of the calpain 1 (CAPN1) gene with the post-mortem tenderness process of meat has been demonstrated in several species. Thus, the objective of the present study was to identify polymorphisms in this gene and to perform an association analysis between these polymorphisms and related economic traits in goose raised in the dehesa ecosystem. For the analysis, 50 geese of 3 different subpopulations (20 Embden Anser anser

    20 Toulouse Anser anser

    10 F1 cross) were studied. The experimental protocols were followed complying with principles of animal welfare. A novel SNP was found in the CAPN1 gene, g.68G → A. This polymorphism was statistically associated with different carcass and meat quality traits such as thigh muscle width ( P = 0.020) and the b* 10-day meat colour parameter ( P = 0.024) for the global goose population. The association of this gene with meat tenderness (Warner–Bratzler shear force) was confirmed in the case of female individuals of the Toulouse breed ( P = 0.043). The results suggest the possibility of using molecular markers in CAPN1 gene as a potential tool for improving carcass and meat quality traits in goose breeding programmes.
    Subject code 630
    Language English
    Publishing date 2018-01-15
    Publishing country de
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Article ; Online: Amplification of the G allele at SNP rs6983267 in 8q24 amplicons in myeloid malignancies as cause of the lack of MYC overexpression?

    Micale, Lucia / Augello, Bartolomeo / Daniele, Giulia / Macchia, Gemma / L'abbate, Alberto / Muehlematter, Dominique / Vandenberghe, Peter / Johansson, Bertil / Cabrol, Christine / Solé, Francesc / Dastugue, Nicole / Slovak, Marilyn L / Lillington, Debra / Raynaud, Sophie / Lafage, Marina / Nacheva, Elizabeth D / Merla, Giuseppe / Storlazzi, Clelia T

    Blood cells, molecules & diseases

    2011  Volume 47, Issue 4, Page(s) 259–261

    MeSH term(s) Alleles ; Chromosomes, Human, Pair 8 ; Gene Amplification ; Gene Expression Regulation, Leukemic ; Genes, myc ; Humans ; Leukemia, Myeloid/genetics ; Myelodysplastic Syndromes/genetics ; Polymorphism, Single Nucleotide
    Language English
    Publishing date 2011-12-15
    Publishing country United States
    Document type Letter
    ZDB-ID 1237083-6
    ISSN 1096-0961 ; 1079-9796
    ISSN (online) 1096-0961
    ISSN 1079-9796
    DOI 10.1016/j.bcmd.2011.09.001
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Association between Interleukin-6 Promoter Polymorphism (-174 G/C), Serum Interleukin-6 Levels and Mortality in Severe Septic Patients.

    Lorente, Leonardo / Martín, María M / Pérez-Cejas, Antonia / Barrios, Ysamar / Solé-Violán, Jordi / Ferreres, José / Labarta, Lorenzo / Díaz, César / Jiménez, Alejandro

    International journal of molecular sciences

    2016  Volume 17, Issue 11

    Abstract: The association between interleukin (IL)-6 promoter polymorphism (-174 G/C), circulating IL-6 ... and IL-6 promoter polymorphism (-174 G/C) were determined. The end-point of the study was 30-day ... G/C): 123 (46.8%) GG, 110 (41.8%) GC and 30 (11.4%) CC. CC homozygous patients showed lower sepsis ...

    Abstract The association between interleukin (IL)-6 promoter polymorphism (-174 G/C), circulating IL-6 levels and mortality in septic patients has scarcely been addressed, and then only in studies of small sample size, and a direct association among them has not been previously reported. Therefore, the purpose of our study was to determine whether this association exists. An observational, prospective and multicenter study including severe septic patients was undertaken and serum IL-6 levels at severe sepsis diagnosis and IL-6 promoter polymorphism (-174 G/C) were determined. The end-point of the study was 30-day mortality. The study included 263 patients with the following genotypes of IL-6 promoter polymorphism (-174 G/C): 123 (46.8%) GG, 110 (41.8%) GC and 30 (11.4%) CC. CC homozygous patients showed lower sepsis-related organ failure assessment (SOFA) score, serum IL-6 levels and mortality at 30 days compared to those with other genotypes (GC or GG). On regression analysis, CC homozygous patients showed lower 30-day mortality than those with genotype GG (odds ratio = 0.21; 95% CI = 0.053-0.838;
    MeSH term(s) Adult ; Aged ; Female ; Gene Expression ; Genetic Predisposition to Disease ; Homozygote ; Humans ; Interleukin-6/blood ; Interleukin-6/genetics ; Male ; Middle Aged ; Odds Ratio ; Polymorphism, Single Nucleotide ; Promoter Regions, Genetic ; Prospective Studies ; Regression Analysis ; Sepsis/blood ; Sepsis/diagnosis ; Sepsis/genetics ; Sepsis/mortality ; Survival Analysis
    Chemical Substances IL6 protein, human ; Interleukin-6
    Language English
    Publishing date 2016-11-08
    Publishing country Switzerland
    Document type Journal Article ; Multicenter Study ; Observational Study
    ZDB-ID 2019364-6
    ISSN 1422-0067 ; 1422-0067 ; 1661-6596
    ISSN (online) 1422-0067
    ISSN 1422-0067 ; 1661-6596
    DOI 10.3390/ijms17111861
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