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  1. Article: Examining operational efficiency with prudent risks of Covid-19: a contextual DEA analysis with an undesirable intermediate measure.

    Singh, Sanjeet / Charles, Vincent / Pandey, Utsav

    Annals of operations research

    2023  , Page(s) 1–31

    Abstract: In the wake of the losses of human lives and disruption to the world economy caused by the spread of the COVID-19 pandemic, it has become imperative to assess the effectiveness of containment strategies adopted by countries. The success of any ... ...

    Abstract In the wake of the losses of human lives and disruption to the world economy caused by the spread of the COVID-19 pandemic, it has become imperative to assess the effectiveness of containment strategies adopted by countries. The success of any containment strategy of achieving low mortality and high recovery rate depends on the efficient utilization of available but limited resources, such as number of hospital beds and healthcare workers. While the spreading pattern of the pandemic has been researched heavily, there is limited research that comprehensively focuses on the efficient utilization of available resources to achieve the desired aims of low mortality and high recovery. In order to close this research gap, we employ a two-stage network data envelopment analysis (DEA) to identify the inefficiency in the process and resolve the resource constraints by considering medical and non-medical (administrative) interventions as two serial stages. The number of infected people is treated as the intermediate product, which is an undesirable output of the first stage and subsequently enters the second stage as an input. This network DEA model successfully addresses the conflict between the two stages over the handling of infected people and assesses the vulnerabilities of the countries against the transmission rates of the disease in the respective countries. Thus, the objective of this study is to develop a well-coordinated plan for different government agencies to jointly mitigate the risk under constrained resources. The findings reveal that almost
    Language English
    Publishing date 2023-02-03
    Publishing country United States
    Document type Journal Article
    ISSN 0254-5330
    ISSN 0254-5330
    DOI 10.1007/s10479-023-05207-7
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Environmental performance evaluation of European farms by assessing polluting factors in joint production

    Pandey, Utsav / Singh, Sanjeet

    Journal of cleaner production. 2021 Dec. 15, v. 328

    2021  

    Abstract: Measuring the environmental efficiency of firms using data envelopment analysis (DEA) has recently gained momentum due to the urgency of climate change. The existing literature on environmental efficiency ignores the internal structures of the production ...

    Abstract Measuring the environmental efficiency of firms using data envelopment analysis (DEA) has recently gained momentum due to the urgency of climate change. The existing literature on environmental efficiency ignores the internal structures of the production system and treats the production unit as a ‘black box’. Thus, it fails to identify the exact source of inefficiencies, which complicates course correction in a multi-stage production system. In response to these inadequacies, this study takes into account the amount of pollutants emitted, in addition to the classic input and output parameters in DEA, in each of the stages to measure the environmental efficiency of the overall system and decompose it into stage-level environmental efficiencies. Two separate models assign each country two separate efficiency scores for its environmental and technical performance. To demonstrate the applicability of the proposed framework, the environmental performance of farms in the European Union is measured. The numbers of efficient farms in technical and environmental approaches are 21% and 8% of the total 130 farms, respectively. The average environmental efficiency scores of the two stages (crop production and animal husbandry) across the farms are found to sharply increase and decrease, respectively in comparison to their corresponding technical efficiency. The study also reveals some interesting conclusions. For example, the environmental performance improves for inefficient farms when they try to achieve technical competence. To achieve overall environmental efficiency, all the stages need to be fully efficient. Based on the shadow prices of the polluting inputs and outputs obtained from the two models, we calculate the marginal rate of substitution for the inputs and marginal rate of transformation for the outputs which help one in carrying out comparative analysis. For instance, the results indicate that fertilizer and forage land are responsible for the majority of the environmental inefficiency. Production of cereal and meat is economically efficient; whereas dairy farming is both resource-intensive and environmentally harmful. Based on this analysis, we suggest important policy measures at both the farm and the country levels.
    Keywords European Union ; animal husbandry ; climate change ; crop production ; environmental performance ; farms ; fertilizers ; forage ; issues and policy ; meat
    Language English
    Dates of publication 2021-1215
    Publishing place Elsevier Ltd
    Document type Article
    ISSN 0959-6526
    DOI 10.1016/j.jclepro.2021.129457
    Database NAL-Catalogue (AGRICOLA)

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  3. Article: Morpho-physiological and biochemical response of rice (

    Bhandari, Utsav / Gajurel, Aakriti / Khadka, Bharat / Thapa, Ishwor / Chand, Isha / Bhatta, Dibya / Poudel, Anju / Pandey, Meena / Shrestha, Suraj / Shrestha, Jiban

    Heliyon

    2023  Volume 9, Issue 3, Page(s) e13744

    Abstract: Global food shortages are caused mainly by drought, the primary driver of yield loss in agriculture worldwide. Drought stress negatively impacts the physiological and morphological characteristics of rice ( ...

    Abstract Global food shortages are caused mainly by drought, the primary driver of yield loss in agriculture worldwide. Drought stress negatively impacts the physiological and morphological characteristics of rice (
    Language English
    Publishing date 2023-02-14
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 2835763-2
    ISSN 2405-8440
    ISSN 2405-8440
    DOI 10.1016/j.heliyon.2023.e13744
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Multiplex respiratory panel repeat testing in pediatric and young adult patients infrequently offers new clinical information.

    Precit, Mimi R / Pandey, Utsav / Mongkolrattanothai, Kanokporn / Yee, Rebecca / Bard, Jennifer Dien

    Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology

    2022  Volume 150-151, Page(s) 105168

    MeSH term(s) Child ; Humans ; Multiplex Polymerase Chain Reaction ; Respiratory System ; Respiratory Tract Infections/diagnosis ; Virus Diseases ; Viruses/genetics ; Young Adult
    Language English
    Publishing date 2022-04-21
    Publishing country Netherlands
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 1446080-4
    ISSN 1873-5967 ; 1386-6532
    ISSN (online) 1873-5967
    ISSN 1386-6532
    DOI 10.1016/j.jcv.2022.105168
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: Herpes Simplex Virus Disease Management and Diagnostics in the Era of High-Throughput Sequencing.

    Pandey, Utsav / Szpara, Moriah L

    Clinical microbiology newsletter

    2019  Volume 41, Issue 5, Page(s) 41–48

    Abstract: Herpes simplex virus (HSV) serotypes 1 and 2 are among the most widespread human viruses. HSV disease has a complex phenotype, with symptoms that can range from mild lesions to encephalitis. In the clinical setting, this diversity of outcomes poses a ... ...

    Abstract Herpes simplex virus (HSV) serotypes 1 and 2 are among the most widespread human viruses. HSV disease has a complex phenotype, with symptoms that can range from mild lesions to encephalitis. In the clinical setting, this diversity of outcomes poses a major challenge, making timely disease diagnosis and treatment challenging. High-throughput sequencing (HTS) has been one of the breakthrough technologies in the modern era of molecular biology, and it is revolutionizing the study of pathogen biology and clinical diagnostics. Here, we review recent studies that have used HTS to answer questions related to the evolution of drug resistance, transmission and spread, virulence marker identification, and the design of better antiviral therapeutics for HSV. We also highlight practical considerations for handling computational analysis of HSV genomes and adoption of HTS as a routine diagnostic procedure in the clinical laboratories.
    Language English
    Publishing date 2019-02-19
    Publishing country United States
    Document type Journal Article
    ZDB-ID 985782-5
    ISSN 1873-4391 ; 0196-4399
    ISSN (online) 1873-4391
    ISSN 0196-4399
    DOI 10.1016/j.clinmicnews.2019.02.003
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: Comparative Analysis of Multiple Consensus Genomes of the Same Strain of Marek's Disease Virus Reveals Intrastrain Variation.

    Ortigas-Vasquez, Alejandro / Pandey, Utsav / Renner, Daniel / Bowen, Chris / Baigent, Susan J / Dunn, John / Cheng, Hans / Yao, Yongxiu / Read, Andrew F / Nair, Venugopal / Kennedy, Dave A / Szpara, Moriah L

    bioRxiv : the preprint server for biology

    2024  

    Abstract: Current strategies to understand the molecular basis of Marek's disease virus (MDV) virulence primarily consist of cataloguing divergent nucleotides between strains with different phenotypes. However, each MDV strain is typically represented by a single ... ...

    Abstract Current strategies to understand the molecular basis of Marek's disease virus (MDV) virulence primarily consist of cataloguing divergent nucleotides between strains with different phenotypes. However, each MDV strain is typically represented by a single consensus genome despite the confirmed existence of mixed viral populations. To assess the reliability of single-consensus interstrain genomic comparisons, we obtained two additional consensus genomes of vaccine strain CVI988 (Rispens) and two additional consensus genomes of the very virulent strain Md5 by sequencing viral stocks and cultured field isolates. In conjunction with the published genomes of CVI988 and Md5, this allowed us to perform 3-way comparisons between consensus genomes of the same strain. We found that consensus genomes of CVI988 can vary in as many as 236 positions involving 13 open reading frames (ORFs). In contrast, we found that Md5 genomes varied only in 11 positions involving a single ORF. Phylogenomic analyses showed all three Md5 consensus genomes clustered closely together, while also showing that CVI988
    Language English
    Publishing date 2024-01-13
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2023.09.04.556264
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Back to the Basics: Biochemical Testing for Pathogen Identification in the Era of Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry (MALDI-TOF MS).

    Pandey, Utsav / Naccache, Samia N / Dien Bard, Jennifer

    Journal of clinical microbiology

    2019  Volume 57, Issue 10

    MeSH term(s) Bacterial Typing Techniques ; Humans ; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods ; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/standards
    Language English
    Publishing date 2019-09-24
    Publishing country United States
    Document type Letter
    ZDB-ID 390499-4
    ISSN 1098-660X ; 0095-1137
    ISSN (online) 1098-660X
    ISSN 0095-1137
    DOI 10.1128/JCM.00498-19
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Morpho-physiological and biochemical response of rice (Oryza sativa L.) to drought stress

    Utsav Bhandari / Aakriti Gajurel / Bharat Khadka / Ishwor Thapa / Isha Chand / Dibya Bhatta / Anju Poudel / Meena Pandey / Suraj Shrestha / Jiban Shrestha

    Heliyon, Vol 9, Iss 3, Pp e13744- (2023)

    A review

    2023  

    Abstract: Global food shortages are caused mainly by drought, the primary driver of yield loss in agriculture worldwide. Drought stress negatively impacts the physiological and morphological characteristics of rice (Oryza sativa L.), limiting the plant ... ...

    Abstract Global food shortages are caused mainly by drought, the primary driver of yield loss in agriculture worldwide. Drought stress negatively impacts the physiological and morphological characteristics of rice (Oryza sativa L.), limiting the plant productivity and hence the economy of global rice production. Physiological changes due to drought stress in rice include constrained cell division and elongation, stomatal closure, loss of turgor adjustment, reduced photosynthesis, and lower yields. Morphological changes include inhibition of seed germination, reduced tillers, early maturity, and reduced biomass. In addition, drought stress leads to a metabolic alteration by increasing the buildup of reactive oxygen species, reactive stress metabolites, antioxidative enzymes, and abscisic acid. Rice tends to combat drought through three major phenomena; tolerance, avoidance, and escape. Several mitigation techniques are introduced and adapted to combat drought stress which includes choosing drought-tolerant cultivars, planting early types, maintaining adequate moisture levels, conventional breeding, molecular maintenance, and creating variants with high-yielding characteristics. This review attempts to evaluate the various morpho-physiological responses of the rice plant to drought, along with drought stress reduction techniques.
    Keywords Drought ; Morphology ; Physiology ; Rice ; Yield ; Science (General) ; Q1-390 ; Social sciences (General) ; H1-99
    Subject code 580
    Language English
    Publishing date 2023-03-01T00:00:00Z
    Publisher Elsevier
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Article ; Online: An artificial neural network‐hydrodynamic coupled modeling approach to assess the impacts of floods under changing climate in the East Rapti Watershed, Nepal

    Bhattarai, Roshika / Bhattarai, Utsav / Pandey, Vishnu Prasad / Bhattarai, Pawan Kumar

    Journal of Flood Risk Management. 2022 Dec., v. 15, no. 4 p.e12852-

    2022  

    Abstract: Recurring floods have devastating consequences on the East Rapti Watershed (ERW), but effective mitigation/adaptation measures are lacking. This article aims at establishing a rainfall‐runoff (RR) relationship; estimating depth and extent of inundation ... ...

    Abstract Recurring floods have devastating consequences on the East Rapti Watershed (ERW), but effective mitigation/adaptation measures are lacking. This article aims at establishing a rainfall‐runoff (RR) relationship; estimating depth and extent of inundation under climate change scenarios; assessing impacts on the socio‐economy; and identifying and evaluating adaptation strategies in the ERW. Artificial Neural Network (ANN) was used to generate peak flows which were then entered into a hydraulic model to simulate inundation. Results were validated with field survey. The calibrated and validated RR and hydraulic models were fed with projected future climate (2021–2050) derived from multiple regional‐climate‐models to assess the changes in inundation. Results showed the peak discharge likely exceeds 10,500 m³/s at the ERW outlet in the extreme future flood scenario with corresponding inundation of 80 km² and up to a depth of 11 m sweeping away over 1000 houses and 19 km² of agricultural land in the critical areas. Constructing a 17 km long embankment in the critical areas along the right bank of the East Rapti River could reduce the flood spread by 35%, safeguarding 78% of the houses and saving 51% agricultural land compared with the scenarios without the embankment.
    Keywords agricultural land ; climate ; climate change ; neural networks ; risk management ; rivers ; runoff ; simulation models ; surveys ; watersheds ; Nepal
    Language English
    Dates of publication 2022-12
    Publishing place Blackwell Publishing Ltd
    Document type Article ; Online
    Note JOURNAL ARTICLE
    ZDB-ID 2430376-8
    ISSN 1753-318X
    ISSN 1753-318X
    DOI 10.1111/jfr3.12852
    Database NAL-Catalogue (AGRICOLA)

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  10. Article ; Online: Effective approaches to three-dimensional digital reconstruction of fragmented human skeletal remains using laser surface scanning.

    Jani, Gargi / Johnson, Abraham / Parekh, Utsav / Thompson, Tim / Pandey, Astha

    Forensic science international. Synergy

    2020  Volume 2, Page(s) 215–223

    Abstract: The preservation and reconstruction of anthropological and archaeological remains has been given considerable attention in recent years, particularly within the fields of forensic science and palaeoanthropology. However, few studies have tapped the ... ...

    Abstract The preservation and reconstruction of anthropological and archaeological remains has been given considerable attention in recent years, particularly within the fields of forensic science and palaeoanthropology. However, few studies have tapped the potential of using 3D technology to reconstruct, remodel and recontour remains and artefacts for the purpose of human identification. The aim of this study was to use 3D technology for the reconstruction and remodelling of fragmented and missing elements of skeletal remains. This project presents the application of three dimensional (3D) modalities to two different simulated forensic case scenarios where an attempt was made to remodel the missing element of the human cranium and reconstruction of fragmented replicated human mandible was performed. The accuracy of the reconstructed model was affirmed based on the anatomical features and digital analysis and methods for use in forensic practice are recommended.
    Keywords covid19
    Language English
    Publishing date 2020-07-31
    Publishing country Netherlands
    Document type Journal Article
    ISSN 2589-871X
    ISSN (online) 2589-871X
    DOI 10.1016/j.fsisyn.2020.07.002
    Database MEDical Literature Analysis and Retrieval System OnLINE

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