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  1. Article ; Online: Histone acetylation: where to go and how to get there.

    MacDonald, Vicki E / Howe, LeAnn J

    Epigenetics

    2009  Volume 4, Issue 3, Page(s) 139–143

    Abstract: Transcriptionally active DNA is packaged with histones that are post-translationally acetylated on multiple lysines within their amino termini. While the majority of this acetylation is limited to the promoters of genes, acetylated histones are also ... ...

    Abstract Transcriptionally active DNA is packaged with histones that are post-translationally acetylated on multiple lysines within their amino termini. While the majority of this acetylation is limited to the promoters of genes, acetylated histones are also found throughout transcribed units. Over the last decade we have uncovered many of the pathways involved in directing histone acetylation to active genes. This review will summarize much of this groundbreaking research as well as discuss some of the outcomes of this important protein post-translational modification.
    MeSH term(s) Acetylation ; Animals ; Epigenesis, Genetic ; Histones/metabolism ; Humans ; Promoter Regions, Genetic ; Transcription, Genetic
    Chemical Substances Histones
    Language English
    Publishing date 2009-04-18
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Review
    ISSN 1559-2308
    ISSN (online) 1559-2308
    DOI 10.4161/epi.4.3.8484
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Critical determinants for chromatin binding by Saccharomyces cerevisiae Yng1 exist outside of the plant homeodomain finger.

    Chruscicki, Adam / Macdonald, Vicki E / Young, Barry P / Loewen, Christopher J R / Howe, Leann J

    Genetics

    2010  Volume 185, Issue 2, Page(s) 469–477

    Abstract: The temporal and spatial regulation of histone post-translational modifications is essential for proper chromatin structure and function. The Saccharomyces cerevisiae NuA3 histone acetyltransferase complex modifies the amino-terminal tail of histone H3, ... ...

    Abstract The temporal and spatial regulation of histone post-translational modifications is essential for proper chromatin structure and function. The Saccharomyces cerevisiae NuA3 histone acetyltransferase complex modifies the amino-terminal tail of histone H3, but how NuA3 is targeted to specific regions of the genome is not fully understood. Yng1, a subunit of NuA3 and a member of the Inhibitor of Growth (ING) protein family, is required for the interaction of NuA3 with chromatin. This protein contains a C-terminal plant homeodomain (PHD) finger that specifically interacts with lysine 4-trimethylated histone H3 (H3K4me3) in vitro. This initially suggested that NuA3 is targeted to regions bearing the H3K4me3 mark; however, deletion of the Yng1 PHD finger does not disrupt the interaction of NuA3 with chromatin or result in a phenotype consistent with loss of NuA3 function in vivo. In this study, we uncovered the molecular basis for the discrepancies in these data. We present both genetic and biochemical evidence that full-length Yng1 has two independent histone-binding motifs: an amino-terminal motif that binds unmodified H3 tails and a carboxyl-terminal PHD finger that specifically recognizes H3K4me3. Although these motifs can bind histones independently, together they increase the apparent association of Yng1 for the H3 tail.
    MeSH term(s) Amino Acid Motifs/genetics ; Chromatin ; DNA-Binding Proteins/chemistry ; DNA-Binding Proteins/genetics ; DNA-Binding Proteins/metabolism ; Histones/chemistry ; Histones/genetics ; Histones/metabolism ; Lysine/chemistry ; Lysine/genetics ; Lysine/metabolism ; Plants/genetics ; Plants/metabolism ; Protein Binding/genetics ; Protein Processing, Post-Translational ; Protein Structure, Tertiary/genetics ; Saccharomyces cerevisiae/genetics ; Saccharomyces cerevisiae/metabolism
    Chemical Substances Chromatin ; DNA-Binding Proteins ; Histones ; Lysine (K3Z4F929H6)
    Language English
    Publishing date 2010-03-29
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2167-2
    ISSN 1943-2631 ; 0016-6731
    ISSN (online) 1943-2631
    ISSN 0016-6731
    DOI 10.1534/genetics.110.116285
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Tyrosine kinase inhibitor toxicities: A society of gynecologic oncology review and recommendations.

    Rimel, Bobbie J / Crane, Erin K / Hou, June / Nakayama, John / MacDonald, Jennifer / Lutz, Kathleen / Makker, Vicky / O'Cearbhaill, Roisin E

    Gynecologic oncology

    2023  Volume 174, Page(s) 148–156

    Abstract: Objective: Oral tyrosine kinase inhibitors (TKIs) have new indications for treatment in gynecologic malignancies. These targeted drugs have both unique and overlapping toxicities, which require careful attention and management. New combination therapies ...

    Abstract Objective: Oral tyrosine kinase inhibitors (TKIs) have new indications for treatment in gynecologic malignancies. These targeted drugs have both unique and overlapping toxicities, which require careful attention and management. New combination therapies with immune-oncology agents have demonstrated promise in endometrial cancer. This review examines common adverse events associated with TKIs and provides readers with an evidence-based review on current uses and strategies for the management of these medications.
    Methods: A comprehensive review of the medical literature on TKI use in gynecologic cancer was undertaken by a committee approach. Details of each drug, its molecular target, and relevant data on both clinical efficacy and side effects were compiled and organized for clinical use. Information on drug-related secondary effects and management strategies for specific toxicities, including dose reduction and concomitant medications, were gathered.
    Results: TKIs can potentially offer improved response rates and durable responses for a group of patients who were previously without an effective standard second-line therapy. The combination of lenvatinib and pembrolizumab represents a more targeted approach to the drivers of endometrial cancer; however, there remains significant drug-related toxicity, and thus dose reduction and dose delay are frequently required. Toxicity management requires frequent check-ins and management strategies to help patients find the highest tolerable dose. TKIs are expensive and patient financial toxicity is as critical a measure of a drug's utility as any drug side effect. Many of these drugs have patient assistance programs, which should be fully utilized to minimize cost.
    Conclusions: Future studies are needed to expand the role of TKIs into new molecularly driven groups. Attention to cost, durability of response, and long-term toxicity management is needed to ensure all eligible patients have access to treatment.
    MeSH term(s) Female ; Humans ; Antineoplastic Agents/adverse effects ; Endometrial Neoplasms/drug therapy ; Treatment Outcome ; Tyrosine Kinase Inhibitors/adverse effects
    Chemical Substances Antineoplastic Agents ; Tyrosine Kinase Inhibitors
    Language English
    Publishing date 2023-05-17
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Review
    ZDB-ID 801461-9
    ISSN 1095-6859 ; 0090-8258
    ISSN (online) 1095-6859
    ISSN 0090-8258
    DOI 10.1016/j.ygyno.2023.05.007
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Use of standardised assessment forms in referrals to hepatology outpatient services: implications for accurate triaging of patients with chronic hepatitis C.

    Horsfall, Leigh / Macdonald, Graeme / Scott, Ian / Skoien, Richard / Khatun, Mohsina / Moss, Cathy / Seligman, Clare / Kardash, Christine / Poxon, Vicki / Powell, Elizabeth E

    Australian health review : a publication of the Australian Hospital Association

    2013  Volume 37, Issue 2, Page(s) 218–222

    Abstract: Objectives: To determine the spectrum of disease among non-urgent referrals to a tertiary hospital hepatology outpatient clinic, assess the adequacy of referral information in terms of risk stratification and determine whether a specifically designed ... ...

    Abstract Objectives: To determine the spectrum of disease among non-urgent referrals to a tertiary hospital hepatology outpatient clinic, assess the adequacy of referral information in terms of risk stratification and determine whether a specifically designed referral template altered urgency for specialist assessment.
    Methods: A snapshot of the waiting list of a hepatology clinic at a tertiary hospital was taken from the scheduling database. Information was retrieved from referrals and attached investigations. Updated information was requested from subjects and their current general practitioner.
    Results: Hepatitis C virus accounted for 68.7% of the 1223 reviewed referrals. Clinical information provided by referring clinicians was often incomplete. Provision of updated information identified the presence of comorbidities (obesity, 'heavy' alcohol consumption, mental health issues) and altered the need or urgency for specialist assessment in 22% of cases.
    Conclusions: Hepatitis C virus accounts for the majority of non-urgent referrals waiting to access hepatology outpatient consultations. Using a standardised assessment form as part of the referral process provides more information on comorbidities and risk factors and facilitates more accurate triaging of clinical urgency. Wider adoption of this strategy may increase appropriate access to hepatology services and reduce the future burden of cirrhosis and hepatocellular cancer. WHAT IS KNOWN ABOUT THE TOPIC? Little published data are available that describe the content and standard of hepatology referrals, or the urgency with which these patients need to be reviewed. Inadequate clinical information impairs the ability to accurately triage referrals and may lead to delays in access. WHAT DOES THE PAPER ADD? Almost 70% of reviewed referrals were for management of patients with hepatitis C virus infection, confirming this condition remains a major priority area in liver disease. Clinical information provided by referring clinicians was often incomplete, impairing the ability to accurately triage referrals. Only a minority of referrals provided information about relevant comorbidities (alcohol intake, injecting drug use, mental health issues and obesity) that negatively impact on the progression of liver disease or the response to antiviral treatment. WHAT ARE THE IMPLICATIONS FOR PRACTITIONERS? Hepatitis C virus remains a major health priority area in liver disease, increasing the future burden of cirrhosis and hepatocellular cancer. Many referred patients have comorbidities that increase their risk of progressive liver disease and related complications. Strategies to increase recognition and management of liver disease and its comorbidities in the community are required. The use of a standardised assessment form in referrals to hepatology outpatient services may assist with triaging of patients and improve access to appropriate care.
    MeSH term(s) Adult ; Ambulatory Care ; Databases, Factual ; Documentation/standards ; Female ; Gastroenterology ; Hepatitis C, Chronic ; Humans ; Male ; Referral and Consultation/standards ; Triage/standards
    Language English
    Publishing date 2013-05
    Publishing country Australia
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 639155-2
    ISSN 0156-5788 ; 0159-5709
    ISSN 0156-5788 ; 0159-5709
    DOI 10.1071/AH12162
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Genomic architecture of autism from comprehensive whole-genome sequence annotation.

    Trost, Brett / Thiruvahindrapuram, Bhooma / Chan, Ada J S / Engchuan, Worrawat / Higginbotham, Edward J / Howe, Jennifer L / Loureiro, Livia O / Reuter, Miriam S / Roshandel, Delnaz / Whitney, Joe / Zarrei, Mehdi / Bookman, Matthew / Somerville, Cherith / Shaath, Rulan / Abdi, Mona / Aliyev, Elbay / Patel, Rohan V / Nalpathamkalam, Thomas / Pellecchia, Giovanna /
    Hamdan, Omar / Kaur, Gaganjot / Wang, Zhuozhi / MacDonald, Jeffrey R / Wei, John / Sung, Wilson W L / Lamoureux, Sylvia / Hoang, Ny / Selvanayagam, Thanuja / Deflaux, Nicole / Geng, Melissa / Ghaffari, Siavash / Bates, John / Young, Edwin J / Ding, Qiliang / Shum, Carole / D'Abate, Lia / Bradley, Clarrisa A / Rutherford, Annabel / Aguda, Vernie / Apresto, Beverly / Chen, Nan / Desai, Sachin / Du, Xiaoyan / Fong, Matthew L Y / Pullenayegum, Sanjeev / Samler, Kozue / Wang, Ting / Ho, Karen / Paton, Tara / Pereira, Sergio L / Herbrick, Jo-Anne / Wintle, Richard F / Fuerth, Jonathan / Noppornpitak, Juti / Ward, Heather / Magee, Patrick / Al Baz, Ayman / Kajendirarajah, Usanthan / Kapadia, Sharvari / Vlasblom, Jim / Valluri, Monica / Green, Joseph / Seifer, Vicki / Quirbach, Morgan / Rennie, Olivia / Kelley, Elizabeth / Masjedi, Nina / Lord, Catherine / Szego, Michael J / Zawati, Ma'n H / Lang, Michael / Strug, Lisa J / Marshall, Christian R / Costain, Gregory / Calli, Kristina / Iaboni, Alana / Yusuf, Afiqah / Ambrozewicz, Patricia / Gallagher, Louise / Amaral, David G / Brian, Jessica / Elsabbagh, Mayada / Georgiades, Stelios / Messinger, Daniel S / Ozonoff, Sally / Sebat, Jonathan / Sjaarda, Calvin / Smith, Isabel M / Szatmari, Peter / Zwaigenbaum, Lonnie / Kushki, Azadeh / Frazier, Thomas W / Vorstman, Jacob A S / Fakhro, Khalid A / Fernandez, Bridget A / Lewis, M E Suzanne / Weksberg, Rosanna / Fiume, Marc / Yuen, Ryan K C / Anagnostou, Evdokia / Sondheimer, Neal / Glazer, David / Hartley, Dean M / Scherer, Stephen W

    Cell

    2022  Volume 185, Issue 23, Page(s) 4409–4427.e18

    Abstract: Fully understanding autism spectrum disorder (ASD) genetics requires whole-genome sequencing (WGS). We present the latest release of the Autism Speaks MSSNG resource, which includes WGS data from 5,100 individuals with ASD and 6,212 non-ASD parents and ... ...

    Abstract Fully understanding autism spectrum disorder (ASD) genetics requires whole-genome sequencing (WGS). We present the latest release of the Autism Speaks MSSNG resource, which includes WGS data from 5,100 individuals with ASD and 6,212 non-ASD parents and siblings (total n = 11,312). Examining a wide variety of genetic variants in MSSNG and the Simons Simplex Collection (SSC; n = 9,205), we identified ASD-associated rare variants in 718/5,100 individuals with ASD from MSSNG (14.1%) and 350/2,419 from SSC (14.5%). Considering genomic architecture, 52% were nuclear sequence-level variants, 46% were nuclear structural variants (including copy-number variants, inversions, large insertions, uniparental isodisomies, and tandem repeat expansions), and 2% were mitochondrial variants. Our study provides a guidebook for exploring genotype-phenotype correlations in families who carry ASD-associated rare variants and serves as an entry point to the expanded studies required to dissect the etiology in the ∼85% of the ASD population that remain idiopathic.
    MeSH term(s) Humans ; Autism Spectrum Disorder/genetics ; Autistic Disorder ; Genetic Predisposition to Disease ; DNA Copy Number Variations/genetics ; Genomics
    Language English
    Publishing date 2022-10-20
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, N.I.H., Extramural
    ZDB-ID 187009-9
    ISSN 1097-4172 ; 0092-8674
    ISSN (online) 1097-4172
    ISSN 0092-8674
    DOI 10.1016/j.cell.2022.10.009
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Heritable defects in telomere and mitotic function selectively predispose to sarcomas.

    Ballinger, Mandy L / Pattnaik, Swetansu / Mundra, Piyushkumar A / Zaheed, Milita / Rath, Emma / Priestley, Peter / Baber, Jonathan / Ray-Coquard, Isabelle / Isambert, Nicholas / Causeret, Sylvain / van der Graaf, Winette T A / Puri, Ajay / Duffaud, Florence / Le Cesne, Axel / Seddon, Beatrice / Chandrasekar, Coonoor / Schiffman, Joshua D / Brohl, Andrew S / James, Paul A /
    Kurtz, Jean-Emmanuel / Penel, Nicolas / Myklebost, Ola / Meza-Zepeda, Leonardo A / Pickett, Hilda / Kansara, Maya / Waddell, Nicola / Kondrashova, Olga / Pearson, John V / Barbour, Andrew P / Li, Shuai / Nguyen, Tuong L / Fatkin, Diane / Graham, Robert M / Giannoulatou, Eleni / Green, Melissa J / Kaplan, Warren / Ravishankar, Shyamsundar / Copty, Joseph / Powell, Joseph E / Cuppen, Edwin / van Eijk, Kristel / Veldink, Jan / Ahn, Jin-Hee / Kim, Jeong Eun / Randall, R Lor / Tucker, Kathy / Judson, Ian / Sarin, Rajiv / Ludwig, Thomas / Genin, Emmanuelle / Deleuze, Jean-Francois / Haber, Michelle / Marshall, Glenn / Cairns, Murray J / Blay, Jean-Yves / Thomas, David M / Tattersall, Martin / Neuhaus, Susan / Lewis, Craig / Carey-Smith, Richard / Wood, David / Porceddu, Sandro / Dickinson, Ian / Thorne, Heather / James, Paul / Cassier, Philippe / Isambert, Nicolas / Ward, Iain / van der Graaf, Winette / Rickar, Rory / Hennig, Ivo / Schiffman, Joshua / Silvestri, Audrey / Zaratzian, Anaiis / Tayao, Michael / Walwyn, Kelly / Niedermayr, Eveline / Mang, Denia / Clark, Richard / Thorpe, Tina / MacDonald, Jessica / Riddell, Kim / Mar, Jasmine / Fennelly, Vicki / Wicht, Allison / Zielony, Belinda / Galligan, Emma / Glavich, Genna / Stoeckert, Johanna / Williams, Lynda / Djandjgava, Lana / Buettner, Iwona / Osinki, Carla / Stephens, Sonya / Rogasik, Muriel / Bouclier, Laure / Girodet, Magali / Charreton, Amandine / Fayet, Yohan / Crasto, Saniya / Sandupatla, Bhanupriya / Yoon, Yeon / Je, Noda / Thompson, Liz / Fowler, Trent / Johnson, Bella / Petrikova, Galina / Hambridge, Thomas / Hutchins, Angela / Bottero, Diego / Scanlon, Deborah / Stokes-Denson, Jo / Génin, Emmanuelle / Campion, Dominique / Dartigues, Jean-François / Deleuze, Jean-François / Lambert, Jean-Charles / Redon, Richard / Grenier-Boley, Benjamin / Letort, Sébastien / Lindenbaum, Pierre / Meyer, Vincent / Quenez, Olivier / Dina, Christian / Bellenguez, Céline / Le Clézio, Camille Charbonnier / Giemza, Joanna / Chatel, Stéphanie / Férec, Claude / Le Marec, Hervé / Letenneur, Luc / Nicolas, Gaël / Rouault, Karen

    Science (New York, N.Y.)

    2023  Volume 379, Issue 6629, Page(s) 253–260

    Abstract: Cancer genetics has to date focused on epithelial malignancies, identifying multiple histotype-specific pathways underlying cancer susceptibility. Sarcomas are rare malignancies predominantly derived from embryonic mesoderm. To identify pathways specific ...

    Abstract Cancer genetics has to date focused on epithelial malignancies, identifying multiple histotype-specific pathways underlying cancer susceptibility. Sarcomas are rare malignancies predominantly derived from embryonic mesoderm. To identify pathways specific to mesenchymal cancers, we performed whole-genome germline sequencing on 1644 sporadic cases and 3205 matched healthy elderly controls. Using an extreme phenotype design, a combined rare-variant burden and ontologic analysis identified two sarcoma-specific pathways involved in mitotic and telomere functions. Variants in centrosome genes are linked to malignant peripheral nerve sheath and gastrointestinal stromal tumors, whereas heritable defects in the shelterin complex link susceptibility to sarcoma, melanoma, and thyroid cancers. These studies indicate a specific role for heritable defects in mitotic and telomere biology in risk of sarcomas.
    MeSH term(s) Humans ; Genetic Predisposition to Disease ; Genetic Variation ; Germ Cells ; Melanoma/genetics ; Mitosis/genetics ; Sarcoma/genetics ; Shelterin Complex/genetics ; Telomere/genetics ; Germ-Line Mutation
    Chemical Substances Shelterin Complex
    Language English
    Publishing date 2023-01-19
    Publishing country United States
    Document type Journal Article
    ZDB-ID 128410-1
    ISSN 1095-9203 ; 0036-8075
    ISSN (online) 1095-9203
    ISSN 0036-8075
    DOI 10.1126/science.abj4784
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Genomic architecture of autism from comprehensive whole-genome sequence annotation

    Trost, Brett / Thiruvahindrapuram, Bhooma / Chan, Ada J.S. / Engchuan, Worrawat / Higginbotham, Edward J. / Howe, Jennifer L. / Loureiro, Livia O. / Reuter, Miriam S. / Roshandel, Delnaz / Whitney, Joe / Zarrei, Mehdi / Bookman, Matthew / Somerville, Cherith / Shaath, Rulan / Abdi, Mona / Aliyev, Elbay / Patel, Rohan V. / Nalpathamkalam, Thomas / Pellecchia, Giovanna /
    Hamdan, Omar / Kaur, Gaganjot / Wang, Zhuozhi / MacDonald, Jeffrey R. / Wei, John / Sung, Wilson W.L. / Lamoureux, Sylvia / Hoang, Ny / Selvanayagam, Thanuja / Deflaux, Nicole / Geng, Melissa / Ghaffari, Siavash / Bates, John / Young, Edwin J. / Ding, Qiliang / Shum, Carole / D'Abate, Lia / Bradley, Clarrisa A. / Rutherford, Annabel / Aguda, Vernie / Apresto, Beverly / Chen, Nan / Desai, Sachin / Du, Xiaoyan / Fong, Matthew L.Y. / Pullenayegum, Sanjeev / Samler, Kozue / Wang, Ting / Ho, Karen / Paton, Tara / Pereira, Sergio L. / Herbrick, Jo-Anne / Wintle, Richard F. / Fuerth, Jonathan / Noppornpitak, Juti / Ward, Heather / Magee, Patrick / Al Baz, Ayman / Kajendirarajah, Usanthan / Kapadia, Sharvari / Vlasblom, Jim / Valluri, Monica / Green, Joseph / Seifer, Vicki / Quirbach, Morgan / Rennie, Olivia / Kelley, Elizabeth / Masjedi, Nina / Lord, Catherine / Szego, Michael J. / Zawati, Ma'n H. / Lang, Michael / Strug, Lisa J. / Marshall, Christian R. / Costain, Gregory / Calli, Kristina / Iaboni, Alana / Yusuf, Afiqah / Ambrozewicz, Patricia / Gallagher, Louise / Amaral, David G. / Brian, Jessica / Elsabbagh, Mayada / Geōrgiadēs, Stelios / Messinger, Daniel S. / Ozonoff, Sally / Sebat, Jonathan / Sjaarda, Calvin / Smith, Isabel M. / Szatmari, Peter / Zwaigenbaum, Lonnie / Kushki, Azadeh / Frazier, Thomas W. / Vorstman, Jacob A.S. / Fakhro, Khalid A. / Fernandez, Bridget A. / Lewis, M.E. Suzanne / Weksberg, Rosanna / Fiume, Marc / Yuen, Ryan K.C. / Anagnostou, Evdokia / Sondheimer, Neal / Glazer, David / Hartley, Dean M. / Scherer, Stephen W.

    Cell. 2022 Nov., v. 185, no. 23 p.4409-4427.e18

    2022  

    Abstract: Fully understanding autism spectrum disorder (ASD) genetics requires whole-genome sequencing (WGS). We present the latest release of the Autism Speaks MSSNG resource, which includes WGS data from 5,100 individuals with ASD and 6,212 non-ASD parents and ... ...

    Abstract Fully understanding autism spectrum disorder (ASD) genetics requires whole-genome sequencing (WGS). We present the latest release of the Autism Speaks MSSNG resource, which includes WGS data from 5,100 individuals with ASD and 6,212 non-ASD parents and siblings (total n = 11,312). Examining a wide variety of genetic variants in MSSNG and the Simons Simplex Collection (SSC; n = 9,205), we identified ASD-associated rare variants in 718/5,100 individuals with ASD from MSSNG (14.1%) and 350/2,419 from SSC (14.5%). Considering genomic architecture, 52% were nuclear sequence-level variants, 46% were nuclear structural variants (including copy-number variants, inversions, large insertions, uniparental isodisomies, and tandem repeat expansions), and 2% were mitochondrial variants. Our study provides a guidebook for exploring genotype-phenotype correlations in families who carry ASD-associated rare variants and serves as an entry point to the expanded studies required to dissect the etiology in the ∼85% of the ASD population that remain idiopathic.
    Keywords autism ; etiology ; genomics ; genotype-phenotype correlation ; mitochondria ; autism spectrum disorder ; neurodevelopmental disorders ; whole-genome sequencing ; copy-number variation ; structural variation ; rare variants ; polygenic risk scores ; phenotype measures
    Language English
    Dates of publication 2022-11
    Size p. 4409-4427.e18.
    Publishing place Elsevier Inc.
    Document type Article ; Online
    ZDB-ID 187009-9
    ISSN 1097-4172 ; 0092-8674
    ISSN (online) 1097-4172
    ISSN 0092-8674
    DOI 10.1016/j.cell.2022.10.009
    Database NAL-Catalogue (AGRICOLA)

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  8. Article: The Yng1p plant homeodomain finger is a methyl-histone binding module that recognizes lysine 4-methylated histone H3.

    Martin, David G E / Baetz, Kristin / Shi, Xiaobing / Walter, Kay L / MacDonald, Vicki E / Wlodarski, Martin J / Gozani, Or / Hieter, Philip / Howe, LeAnn

    Molecular and cellular biology

    2006  Volume 26, Issue 21, Page(s) 7871–7879

    Abstract: The ING (inhibitor of growth) protein family includes a group of homologous nuclear proteins that share a highly conserved plant homeodomain (PHD) finger domain at their carboxyl termini. Members of this family are found in multiprotein complexes that ... ...

    Abstract The ING (inhibitor of growth) protein family includes a group of homologous nuclear proteins that share a highly conserved plant homeodomain (PHD) finger domain at their carboxyl termini. Members of this family are found in multiprotein complexes that posttranslationally modify histones, suggesting that these proteins serve a general role in permitting various enzymatic activities to interact with nucleosomes. There are three members of the ING family in Saccharomyces cerevisiae: Yng1p, Yng2p, and Pho23p. Yng1p is a component of the NuA3 histone acetyltransferase complex and is required for the interaction of NuA3 with chromatin. To gain insight into the function of the ING proteins, we made use of a genetic strategy to identify genes required for the binding of Yng1p to histones. Using the toxicity of YNG1 overexpression as a tool, we showed that Yng1p interacts with the amino-terminal tail of histone H3 and that this interaction can be disrupted by loss of lysine 4 methylation within this tail. Additionally, we mapped the region of Yng1p required for overexpression of toxicity to the PHD finger, showed that this region capable of binding lysine 4-methylated histone H3 in vitro, and demonstrated that mutations of the PHD finger that abolish binding in vitro are no longer toxic in vivo. These results identify a novel function for the Yng1p PHD finger in promoting stabilization of the NuA3 complex at chromatin through recognition of histone H3 lysine 4 methylation.
    MeSH term(s) Animals ; Chromatin/metabolism ; Histone Acetyltransferases ; Histones/genetics ; Histones/metabolism ; Lysine/metabolism ; Methylation ; Protein Binding ; Protein Structure, Tertiary ; Recombinant Fusion Proteins/genetics ; Recombinant Fusion Proteins/metabolism ; Saccharomyces cerevisiae/genetics ; Saccharomyces cerevisiae/metabolism ; Saccharomyces cerevisiae Proteins/genetics ; Saccharomyces cerevisiae Proteins/metabolism
    Chemical Substances Chromatin ; Histones ; Recombinant Fusion Proteins ; Saccharomyces cerevisiae Proteins ; Histone Acetyltransferases (EC 2.3.1.48) ; Yng1 protein, S cerevisiae (EC 2.3.1.48) ; Lysine (K3Z4F929H6)
    Language English
    Publishing date 2006-11
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 779397-2
    ISSN 1098-5549 ; 0270-7306
    ISSN (online) 1098-5549
    ISSN 0270-7306
    DOI 10.1128/MCB.00573-06
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: 2023 Canadian Surgery Forum: Sept. 20-23, 2023.

    Brière, Raphaëlle / Émond, Marce / Benhamed, Axel / Blanchard, Pierre-Gilles / Drolet, Sébastien / Habashi, Rogeh / Golbon, Bahar / Shellenberger, Jonas / Pasternak, Jesse / Merchant, Shaila / La, Julie / Sawhney, Monakshi / Brogly, Susan / Cadili, Lina / Horkoff, Michael / Ainslie, Scott / Demetrick, Jeffrey / Chai, Brian / Wiseman, Kevin /
    Hwang, Hamish / Alhumoud, Zainab / Salem, Amro / Lau, Rebecca / Aw, Katherine / Nessim, Carolyn / Gawad, Nada / Alibhai, Kameela / Towaij, Chelsea / Doan, Danielle / Raîche, Isabelle / Valji, Rahim / Turner, Simon / Balmes, Patricia Nicole / Hameed, S Morad / Tan, Jun Guang Kendric / Wijesuriya, Ruwan / Hew, Nicole Lee Chui / Lund, Matthew / Hawel, Jeffrey / Gregor, Jamie / Leslie, Ken / Lenet, Tori / McIsaac, Daniel / Hallet, Julie / Jerath, Angela / Lalu, Manoj / Nicholls, Stuart / Presseau, Justin / Tinmouth, Alan / Verret, Michael / Wherrett, Christopher / Fergusson, Dean / Martel, Guillaume / Sharma, Sahil / McKechnie, Tyler / Talwar, Gaurav / Patel, Janhavi / Heimann, Luke / Doumouras, Aristithes / Hong, Dennis / Eskicioglu, Cagla / Wang, Christine / Guo, Michael / Huang, Longlong / Sun, Shaun / Davis, Noelle / Wang, Julian / Skulsky, Samuel / Sikora, Lindsey / Son, Hyo Jin / Gee, Denise / Gomez, David / Jung, James / Selvam, Rajajee / Seguin, Nieve / Zhang, Lisa / 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    Language English
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    Publishing country Canada
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