Article ; Online: Tsyn-Seq: a T-cell Synapse-Based Antigen Identification Platform.
2024 Volume 12, Issue 5, Page(s) 530–543
Abstract: Tools for genome-wide rapid identification of peptide-major histocompatibility complex targets of T ... the T-synapse (Tsyn) reporter system, which includes antigen-presenting cells (APC) with a Fas-inducible ... NF-κB reporter and T cells with a nuclear factor of activated T cells (NFAT) reporter ...
Abstract | Tools for genome-wide rapid identification of peptide-major histocompatibility complex targets of T-cell receptors (TCR) are not yet universally available. We present a new antigen screening method, the T-synapse (Tsyn) reporter system, which includes antigen-presenting cells (APC) with a Fas-inducible NF-κB reporter and T cells with a nuclear factor of activated T cells (NFAT) reporter. To functionally screen for target antigens from a cDNA library, productively interacting T cell-APC aggregates were detected by dual-reporter activity and enriched by flow sorting followed by antigen identification quantified by deep sequencing (Tsyn-seq). When applied to a previously characterized TCR specific for the E7 antigen derived from human papillomavirus type 16 (HPV16), Tsyn-seq successfully enriched the correct cognate antigen from a cDNA library derived from an HPV16-positive cervical cancer cell line. Tsyn-seq provides a method for rapidly identifying antigens recognized by TCRs of interest from a tumor cDNA library. See related Spotlight by Makani and Joglekar, p. 515. |
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MeSH term(s) | Humans ; Receptors, Antigen, T-Cell/immunology ; Receptors, Antigen, T-Cell/genetics ; T-Lymphocytes/immunology ; High-Throughput Nucleotide Sequencing ; Papillomavirus E7 Proteins/immunology ; Papillomavirus E7 Proteins/genetics ; Gene Library ; Antigen-Presenting Cells/immunology ; NFATC Transcription Factors/metabolism ; NFATC Transcription Factors/immunology ; Cell Line, Tumor ; NF-kappa B/metabolism ; Immunological Synapses/immunology ; Human papillomavirus 16/immunology ; Human papillomavirus 16/genetics ; Female |
Chemical Substances | Receptors, Antigen, T-Cell ; Papillomavirus E7 Proteins ; NFATC Transcription Factors ; oncogene protein E7, Human papillomavirus type 16 ; NF-kappa B |
Language | English |
Publishing date | 2024-02-16 |
Publishing country | United States |
Document type | Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, N.I.H., Extramural |
ZDB-ID | 2732489-8 |
ISSN | 2326-6074 ; 2326-6066 |
ISSN (online) | 2326-6074 |
ISSN | 2326-6066 |
DOI | 10.1158/2326-6066.CIR-23-0467 |
Database | MEDical Literature Analysis and Retrieval System OnLINE |
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