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  1. Article ; Online: Not lost in host translation: The new roles of long noncoding RNAs in infectious diseases.

    Reisacher, Caroline / Arbibe, Laurence

    Cellular microbiology

    2019  Volume 21, Issue 11, Page(s) e13119

    Abstract: Long non-coding RNAs (lncRNAs) play a central role in the regulation of gene expression. Although they were initially described as mRNA-like transcripts not encoding proteins, global approaches such as ribosome profiling have shown that they frequently ... ...

    Abstract Long non-coding RNAs (lncRNAs) play a central role in the regulation of gene expression. Although they were initially described as mRNA-like transcripts not encoding proteins, global approaches such as ribosome profiling have shown that they frequently associate with ribosomes, opening the possibility that lncRNAs are a source of cryptic translation events with functional roles. Recent studies have shed more light on small ORFs borne by lncRNAs and encoding short peptides potentially involved in infectious immunity. This review outlines the main strategies used to determine the coding potential of lncRNAs and discusses our emerging understanding of the implication of the encoded peptides in infectious diseases.
    MeSH term(s) Animals ; Communicable Diseases/genetics ; Communicable Diseases/immunology ; Communicable Diseases/metabolism ; Gene Expression Profiling ; Humans ; Open Reading Frames/genetics ; Peptides/immunology ; Peptides/metabolism ; Protein Biosynthesis/genetics ; Protein Biosynthesis/immunology ; Proteomics ; RNA, Long Noncoding/chemistry ; RNA, Long Noncoding/genetics ; RNA, Long Noncoding/immunology ; RNA, Long Noncoding/metabolism ; Ribosomes/metabolism
    Chemical Substances Peptides ; RNA, Long Noncoding
    Language English
    Publishing date 2019-10-28
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 1468320-9
    ISSN 1462-5822 ; 1462-5814
    ISSN (online) 1462-5822
    ISSN 1462-5814
    DOI 10.1111/cmi.13119
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: HP1γ Prevents Activation of the cGAS/STING Pathway by Preserving Nuclear Envelope and Genomic Integrity in Colon Adenocarcinoma Cells.

    Mata-Garrido, Jorge / Frizzi, Laura / Nguyen, Thien / He, Xiangyan / Chang-Marchand, Yunhua / Xiang, Yao / Reisacher, Caroline / Casafont, Iñigo / Arbibe, Laurence

    International journal of molecular sciences

    2023  Volume 24, Issue 8

    Abstract: Chronic inflammatory processes in the intestine result in serious conditions such as inflammatory bowel disease (IBD) and cancer. An increased detection of cytoplasmic DNA sensors has been reported in the IBD colon mucosa, suggesting their contribution ... ...

    Abstract Chronic inflammatory processes in the intestine result in serious conditions such as inflammatory bowel disease (IBD) and cancer. An increased detection of cytoplasmic DNA sensors has been reported in the IBD colon mucosa, suggesting their contribution in mucosal inflammation. Yet, the mechanisms altering DNA homeostasis and triggering the activation of DNA sensors remain poorly understood. In this study, we show that the epigenetic regulator HP1γ plays a role in preserving nuclear envelope and genomic integrity in enterocytic cells, thereby protecting against the presence of cytoplasmic DNA. Accordingly, HP1 loss of function led to the increased detection of cGAS/STING, a cytoplasmic DNA sensor that triggers inflammation. Thus, in addition to its role as a transcriptional silencer, HP1γ may also exert anti-inflammatory properties by preventing the activation of the endogenous cytoplasmic DNA response in the gut epithelium.
    MeSH term(s) Humans ; Nuclear Envelope/metabolism ; Signal Transduction ; Adenocarcinoma/genetics ; Colonic Neoplasms/genetics ; Nucleotidyltransferases/genetics ; Nucleotidyltransferases/metabolism ; Inflammation/pathology ; DNA ; Inflammatory Bowel Diseases ; Genomics
    Chemical Substances Nucleotidyltransferases (EC 2.7.7.-) ; DNA (9007-49-2)
    Language English
    Publishing date 2023-04-16
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2019364-6
    ISSN 1422-0067 ; 1422-0067 ; 1661-6596
    ISSN (online) 1422-0067
    ISSN 1422-0067 ; 1661-6596
    DOI 10.3390/ijms24087347
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Customizing Host Chromatin: a Bacterial Tale.

    Connor, Michael / Arbibe, Laurence / Hamon, Mélanie

    Microbiology spectrum

    2019  Volume 7, Issue 2

    Abstract: Successful bacterial colonizers and pathogens have evolved with their hosts and have acquired mechanisms to customize essential processes that benefit their lifestyle. In large part, bacterial survival hinges on shaping the transcriptional signature of ... ...

    Abstract Successful bacterial colonizers and pathogens have evolved with their hosts and have acquired mechanisms to customize essential processes that benefit their lifestyle. In large part, bacterial survival hinges on shaping the transcriptional signature of the host, a process regulated at the chromatin level. Modifications of chromatin, either on histone proteins or on DNA itself, are common targets during bacterium-host cross talk and are the focus of this article.
    MeSH term(s) Bacteria/growth & development ; Bacteria/metabolism ; Bacteria/pathogenicity ; Bacterial Infections/immunology ; Bacterial Infections/metabolism ; Bacterial Infections/microbiology ; Cell Nucleus/metabolism ; Chromatin/metabolism ; DNA/metabolism ; DNA Methylation ; Histones/metabolism ; Host-Pathogen Interactions/immunology ; Host-Pathogen Interactions/physiology ; Humans
    Chemical Substances Chromatin ; Histones ; DNA (9007-49-2)
    Language English
    Publishing date 2019-04-05
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Review
    ISSN 2165-0497
    ISSN (online) 2165-0497
    DOI 10.1128/microbiolspec.BAI-0015-2019
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Immune subversion by chromatin manipulation: a 'new face' of host-bacterial pathogen interaction.

    Arbibe, Laurence

    Cellular microbiology

    2008  Volume 10, Issue 8, Page(s) 1582–1590

    Abstract: Bacterial pathogens have evolved various strategies to avoid immune surveillance, depending of their in vivo'lifestyle'. The identification of few bacterial effectors capable to enter the nucleus and modifying chromatin structure in host raises the ... ...

    Abstract Bacterial pathogens have evolved various strategies to avoid immune surveillance, depending of their in vivo'lifestyle'. The identification of few bacterial effectors capable to enter the nucleus and modifying chromatin structure in host raises the fascinating questions of how pathogens modulate chromatin structure and why. Chromatin is a dynamic structure that maintains the stability and accessibility of the host DNA genome to the transcription machinery. This review describes the various strategies used by pathogens to interface with host chromatin. In some cases, chromatin injury can be a strategy to take control of major cellular functions, such as the cell cycle. In other cases, manipulation of chromatin structure at specific genomic locations by modulating epigenetic information provides a way for the pathogen to impose its own transcriptional signature onto host cells. This emerging field should strongly influence our understanding of chromatin regulation at interphase nucleus and may provide invaluable openings to the control of immune gene expression in inflammatory and infectious diseases.
    MeSH term(s) Animals ; Bacteria/immunology ; Bacterial Infections/microbiology ; Chromatin/metabolism ; Chromatin Assembly and Disassembly ; Host-Pathogen Interactions ; Humans ; Plant Diseases/microbiology ; Plants/microbiology ; Transcription, Genetic
    Chemical Substances Chromatin
    Language English
    Publishing date 2008-08
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 1468320-9
    ISSN 1462-5822 ; 1462-5814
    ISSN (online) 1462-5822
    ISSN 1462-5814
    DOI 10.1111/j.1462-5822.2008.01170.x
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Reactive Oxygen Species-Dependent Innate Immune Mechanisms Control Methicillin-Resistant Staphylococcus aureus Virulence in the

    Ramond, Elodie / Jamet, Anne / Ding, Xiongqi / Euphrasie, Daniel / Bouvier, Clémence / Lallemant, Louison / He, Xiangyan / Arbibe, Laurence / Coureuil, Mathieu / Charbit, Alain

    mBio

    2021  Volume 12, Issue 3, Page(s) e0027621

    Abstract: Antibiotic-resistant Staphylococcus aureus strains constitute a major public health concern worldwide and are responsible for both health care- and community-associated infections. Here, we establish a robust and easy-to-implement model of oral S. aureus ...

    Abstract Antibiotic-resistant Staphylococcus aureus strains constitute a major public health concern worldwide and are responsible for both health care- and community-associated infections. Here, we establish a robust and easy-to-implement model of oral S. aureus infection using Drosophila melanogaster larvae that allowed us to follow the fate of S. aureus at the whole-organism level as well as the host immune responses. Our study demonstrates that S. aureus infection triggers H
    MeSH term(s) Animals ; Disease Models, Animal ; Drosophila melanogaster/immunology ; Drosophila melanogaster/microbiology ; Gene Expression Regulation, Bacterial ; Host-Pathogen Interactions/immunology ; Immunity, Innate ; Larva/immunology ; Larva/microbiology ; Methicillin-Resistant Staphylococcus aureus/immunology ; Methicillin-Resistant Staphylococcus aureus/pathogenicity ; Pore Forming Cytotoxic Proteins/genetics ; Pore Forming Cytotoxic Proteins/immunology ; Reactive Oxygen Species/immunology ; Reactive Oxygen Species/metabolism ; Staphylococcal Infections/immunology ; Staphylococcal Infections/microbiology ; Virulence
    Chemical Substances Pore Forming Cytotoxic Proteins ; Reactive Oxygen Species
    Language English
    Publishing date 2021-06-15
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2557172-2
    ISSN 2150-7511 ; 2161-2129
    ISSN (online) 2150-7511
    ISSN 2161-2129
    DOI 10.1128/mBio.00276-21
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: Les calpaïnes : un rôle décisif dans la vie et la mort de la niche épithéliale infectée par l'entéropathogène Shigella flexneri.

    Bergounioux, Jean / Arbibe, Laurence

    Medecine sciences : M/S

    2012  Volume 28, Issue 12, Page(s) 1029–1031

    Title translation Calpain activation by Shigella flexneri regulates key steps in the life and death of bacterium's epithelial niche.
    MeSH term(s) Animals ; Calpain/metabolism ; Calpain/physiology ; Dysentery, Bacillary/metabolism ; Dysentery, Bacillary/microbiology ; Dysentery, Bacillary/pathology ; Enzyme Activation/physiology ; Humans ; Intestinal Mucosa/metabolism ; Intestinal Mucosa/microbiology ; Intestinal Mucosa/pathology ; Microbial Viability ; Models, Biological ; Shigella flexneri/growth & development ; Shigella flexneri/physiology ; Signal Transduction
    Chemical Substances Calpain (EC 3.4.22.-)
    Language French
    Publishing date 2012-12
    Publishing country France
    Document type News
    ZDB-ID 632733-3
    ISSN 1958-5381 ; 0767-0974
    ISSN (online) 1958-5381
    ISSN 0767-0974
    DOI 10.1051/medsci/20122812002
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: Immune subversion by chromatin manipulation: a 'new face' of host-bacterial pathogen interaction

    Arbibe, Laurence

    Cellular microbiology. 2008 Aug., v. 10, no. 8

    2008  

    Abstract: Bacterial pathogens have evolved various strategies to avoid immune surveillance, depending of their in vivo'lifestyle'. The identification of few bacterial effectors capable to enter the nucleus and modifying chromatin structure in host raises the ... ...

    Abstract Bacterial pathogens have evolved various strategies to avoid immune surveillance, depending of their in vivo'lifestyle'. The identification of few bacterial effectors capable to enter the nucleus and modifying chromatin structure in host raises the fascinating questions of how pathogens modulate chromatin structure and why. Chromatin is a dynamic structure that maintains the stability and accessibility of the host DNA genome to the transcription machinery. This review describes the various strategies used by pathogens to interface with host chromatin. In some cases, chromatin injury can be a strategy to take control of major cellular functions, such as the cell cycle. In other cases, manipulation of chromatin structure at specific genomic locations by modulating epigenetic information provides a way for the pathogen to impose its own transcriptional signature onto host cells. This emerging field should strongly influence our understanding of chromatin regulation at interphase nucleus and may provide invaluable openings to the control of immune gene expression in inflammatory and infectious diseases.
    Language English
    Dates of publication 2008-08
    Size p. 1582-1590.
    Publisher Blackwell Publishing Ltd
    Publishing place Oxford, UK
    Document type Article
    ZDB-ID 1468320-9
    ISSN 1462-5822 ; 1462-5814
    ISSN (online) 1462-5822
    ISSN 1462-5814
    DOI 10.1111/j.1462-5822.2008.01170.x
    Database NAL-Catalogue (AGRICOLA)

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  8. Article ; Online: The Heterochromatin protein 1 is a regulator in RNA splicing precision deficient in ulcerative colitis.

    Mata-Garrido, Jorge / Xiang, Yao / Chang-Marchand, Yunhua / Reisacher, Caroline / Ageron, Elisabeth / Guerrera, Ida Chiara / Casafont, Iñigo / Bruneau, Aurelia / Cherbuy, Claire / Treton, Xavier / Dumay, Anne / Ogier-Denis, Eric / Batsché, Eric / Costallat, Mickael / Revêchon, Gwladys / Eriksson, Maria / Muchardt, Christian / Arbibe, Laurence

    Nature communications

    2022  Volume 13, Issue 1, Page(s) 6834

    Abstract: Defects in RNA splicing have been linked to human disorders, but remain poorly explored in inflammatory bowel disease (IBD). Here, we report that expression of the chromatin and alternative splicing regulator HP1γ is reduced in ulcerative colitis (UC). ... ...

    Abstract Defects in RNA splicing have been linked to human disorders, but remain poorly explored in inflammatory bowel disease (IBD). Here, we report that expression of the chromatin and alternative splicing regulator HP1γ is reduced in ulcerative colitis (UC). Accordingly, HP1γ gene inactivation in the mouse gut epithelium triggers IBD-like traits, including inflammation and dysbiosis. In parallel, we find that its loss of function broadly increases splicing noise, favoring the usage of cryptic splice sites at numerous genes with functions in gut biology. This results in the production of progerin, a toxic splice variant of prelamin A mRNA, responsible for the Hutchinson-Gilford Progeria Syndrome of premature aging. Splicing noise is also extensively detected in UC patients in association with inflammation, with progerin transcripts accumulating in the colon mucosa. We propose that monitoring HP1γ activity and RNA splicing precision can help in the management of IBD and, more generally, of accelerated aging.
    MeSH term(s) Humans ; Mice ; Animals ; Chromobox Protein Homolog 5 ; Colitis, Ulcerative/genetics ; RNA Splicing/genetics ; Progeria/genetics ; Progeria/metabolism ; Inflammation
    Chemical Substances Chromobox Protein Homolog 5 (107283-02-3)
    Language English
    Publishing date 2022-11-18
    Publishing country England
    Document type Journal Article
    ZDB-ID 2553671-0
    ISSN 2041-1723 ; 2041-1723
    ISSN (online) 2041-1723
    ISSN 2041-1723
    DOI 10.1038/s41467-022-34556-3
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article: Targeting of chromatin readers: a novel strategy used by the

    Harouz, Habiba / Rachez, Christophe / Meijer, Benoit / Muchardt, Christian / Arbibe, Laurence

    Microbial cell (Graz, Austria)

    2014  Volume 2, Issue 1, Page(s) 26–28

    Abstract: ... Shigella ... ...

    Abstract Shigella flexneri
    Language English
    Publishing date 2014-12-28
    Publishing country Austria
    Document type Journal Article ; Comment
    ZDB-ID 2814756-X
    ISSN 2311-2638
    ISSN 2311-2638
    DOI 10.15698/mic2015.01.183
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Epigenetic regulation of host response to LPS: causing tolerance while avoiding Toll errancy.

    Arbibe, Laurence / Sansonetti, Philippe J

    Cell host & microbe

    2007  Volume 1, Issue 4, Page(s) 244–246

    Abstract: Tolerance to lipopolysaccharide (LPS) is part of the host's strategy to avoid harmful excessive inflammation in the presence of Gram-negative commensals and pathogens. Macrophages are the major cells endowed with this property, allowing them to limit ... ...

    Abstract Tolerance to lipopolysaccharide (LPS) is part of the host's strategy to avoid harmful excessive inflammation in the presence of Gram-negative commensals and pathogens. Macrophages are the major cells endowed with this property, allowing them to limit expression of proinflammatory genes while maintaining efficient antimicrobial functions. In a recent paper, Foster et al. (2007) demonstrate that this subtle balance is established and imprinted via epigenetic regulation.
    MeSH term(s) Cytokines/physiology ; Drug Design ; Drug Tolerance ; Gene Expression Regulation ; Humans ; Inflammation/prevention & control ; Lipopolysaccharides/toxicity ; Toll-Like Receptor 4/physiology ; Toll-Like Receptors/physiology
    Chemical Substances Cytokines ; Lipopolysaccharides ; TLR4 protein, human ; Toll-Like Receptor 4 ; Toll-Like Receptors
    Language English
    Publishing date 2007-11-15
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2278004-X
    ISSN 1934-6069 ; 1931-3128
    ISSN (online) 1934-6069
    ISSN 1931-3128
    DOI 10.1016/j.chom.2007.05.011
    Database MEDical Literature Analysis and Retrieval System OnLINE

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