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Article ; Online: Immunity, virus evolution, and effectiveness of SARS-CoV-2 vaccines.

Belizário, J E

Brazilian journal of medical and biological research = Revista brasileira de pesquisas medicas e biologicas

2021 Volume 54, Issue 5, Page(s) e10725

Abstract: Phylogenetic and pathogenesis studies of the severe acute respiratory syndrome-related coronaviruses (SARS-CoVs) strains have highlighted some specific mutations that could confer the RNA genome fitness advantages and immunological resistance for their ... ...

Abstract	Phylogenetic and pathogenesis studies of the severe acute respiratory syndrome-related coronaviruses (SARS-CoVs) strains have highlighted some specific mutations that could confer the RNA genome fitness advantages and immunological resistance for their rapid spread in the human population. The analyses of 30 kb RNA SARS-CoVs genome sequences, protein structures, and functions have provided us a perspective of how host-virus protein-protein complexes act to mediate virus infection. The open reading frame (ORF)1a and ORF1b translation yields 16 non-structural (nsp1-16) and 6 accessory proteins (p6, p7a, p8ab, p9b) with multiple functional domains. Viral proteins recruit over 300 host partners forming hetero-oligomeric complexes enabling the viral RNA synthesis, packing, and virion release. Many cellular host factors and the innate immune cells through pattern-recognition receptors and intracellular RNA sensor molecules act to inhibit virus entry and intracellular replication. However, non-structural ORF proteins hijack them and suppress interferon synthesis and its antiviral effects. Pro-inflammatory chemokines and cytokines storm leads to dysfunctional inflammation, lung injury, and several clinical symptoms in patients. During the global pandemic, COVID-19 patients were identified with non-synonymous substitution of G614D in the spike protein, indicating virus co-evolution in host cells. We review findings that suggest that host RNA editing and DNA repair systems, while carrying on recombination, mutation, and repair of viral RNA intermediates, may facilitate virus evolution. Understanding how the host cell RNA replication process may be driven by SARS-CoV-2 RNA genome fitness will help the testing of vaccines effectiveness to multiple independent mutated coronavirus strains that will emerge.
MeSH term(s)	COVID-19 ; COVID-19 Vaccines ; Humans ; Phylogeny ; RNA, Viral/genetics ; SARS-CoV-2
Chemical Substances	COVID-19 Vaccines ; RNA, Viral
Language	English
Publishing date	2021-03-15
Publishing country	Brazil
Document type	Journal Article ; Review
ZDB-ID	786234-9
ISSN	1414-431X ; 0100-879X
ISSN (online)	1414-431X
ISSN	0100-879X
DOI	10.1590/1414-431X202010725
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Article ; Online: Immunity, virus evolution, and effectiveness of SARS-CoV-2 vaccines

J.E. Belizário

Brazilian Journal of Medical and Biological Research, Vol 54, Iss

2021 Volume 5

Abstract	Phylogenetic and pathogenesis studies of the severe acute respiratory syndrome-related coronaviruses (SARS-CoVs) strains have highlighted some specific mutations that could confer the RNA genome fitness advantages and immunological resistance for their rapid spread in the human population. The analyses of 30 kb RNA SARS-CoVs genome sequences, protein structures, and functions have provided us a perspective of how host-virus protein-protein complexes act to mediate virus infection. The open reading frame (ORF)1a and ORF1b translation yields 16 non-structural (nsp1-16) and 6 accessory proteins (p6, p7a, p8ab, p9b) with multiple functional domains. Viral proteins recruit over 300 host partners forming hetero-oligomeric complexes enabling the viral RNA synthesis, packing, and virion release. Many cellular host factors and the innate immune cells through pattern-recognition receptors and intracellular RNA sensor molecules act to inhibit virus entry and intracellular replication. However, non-structural ORF proteins hijack them and suppress interferon synthesis and its antiviral effects. Pro-inflammatory chemokines and cytokines storm leads to dysfunctional inflammation, lung injury, and several clinical symptoms in patients. During the global pandemic, COVID-19 patients were identified with non-synonymous substitution of G614D in the spike protein, indicating virus co-evolution in host cells. We review findings that suggest that host RNA editing and DNA repair systems, while carrying on recombination, mutation, and repair of viral RNA intermediates, may facilitate virus evolution. Understanding how the host cell RNA replication process may be driven by SARS-CoV-2 RNA genome fitness will help the testing of vaccines effectiveness to multiple independent mutated coronavirus strains that will emerge.
Keywords	SARS-CoV-2 ; COVID-19 ; Immunity ; Virus evolution ; Vaccines ; Medicine (General) ; R5-920 ; Biology (General) ; QH301-705.5
Subject code	612
Language	English
Publishing date	2021-03-01T00:00:00Z
Publisher	Associação Brasileira de Divulgação Científica
Document type	Article ; Online
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Article ; Online: Breath Biopsy and Discovery of Exclusive Volatile Organic Compounds for Diagnosis of Infectious Diseases.

Belizário, José E / Faintuch, Joel / Malpartida, Miguel Garay

Frontiers in cellular and infection microbiology

2021 Volume 10, Page(s) 564194

Abstract: Exhaled breath contains thousand metabolites and volatile organic compounds (VOCs) that originated from both respiratory tract and internal organ systems and their microbiomes. Commensal and pathogenic bacteria and virus of microbiomes are capable of ... ...

Abstract	Exhaled breath contains thousand metabolites and volatile organic compounds (VOCs) that originated from both respiratory tract and internal organ systems and their microbiomes. Commensal and pathogenic bacteria and virus of microbiomes are capable of producing VOCs of different chemical classes, and some of them may serve as biomarkers for installation and progression of various common human diseases. Here we describe qualitative and quantitative methods for measuring VOC fingerprints generated by cellular and microbial metabolic and pathologic pathways. We describe different chemical classes of VOCs and their role in the host cell-microbial interactions and their impact on infection disease pathology. We also update on recent progress on VOC signatures emitted by isolated bacterial species and microbiomes, and VOCs identified in exhaled breath of patients with respiratory tract and gastrointestinal diseases, and inflammatory syndromes, including the acute respiratory distress syndrome and sepsis. The VOC curated databases and instrumentations have been developed through statistically robust breathomic research in large patient populations. Scientists have now the opportunity to find potential biomarkers for both triage and diagnosis of particular human disease.
MeSH term(s)	Biomarkers ; Biopsy ; Breath Tests ; Communicable Diseases ; Humans ; Respiratory System ; Volatile Organic Compounds
Chemical Substances	Biomarkers ; Volatile Organic Compounds
Language	English
Publishing date	2021-01-07
Publishing country	Switzerland
Document type	Journal Article ; Research Support, Non-U.S. Gov't ; Review
ZDB-ID	2619676-1
ISSN	2235-2988 ; 2235-2988
ISSN (online)	2235-2988
ISSN	2235-2988
DOI	10.3389/fcimb.2020.564194
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Article: Microbiome and Gut Dysbiosis.

Belizário, José E / Faintuch, Joel

Experientia supplementum (2012)

2018 Volume 109, Page(s) 459–476

Abstract: The gastrointestinal (GI) tract is the residence of trillions of microorganisms that include bacteria, archaea, fungi and viruses. The collective genomes of whole microbial communities (microbiota) integrate the gut microbiome. Up to 100 genera and 1000 ... ...

Abstract	The gastrointestinal (GI) tract is the residence of trillions of microorganisms that include bacteria, archaea, fungi and viruses. The collective genomes of whole microbial communities (microbiota) integrate the gut microbiome. Up to 100 genera and 1000 distinct bacterial species were identified in digestive tube niches. Gut microbiomes exert permanent pivotal functions by promoting food digestion, xenobiotic metabolism and regulation of innate and adaptive immunological processes. Proteins, peptides and metabolites released locally and at distant sites trigger many cell signalling and pathways. This intense crosstalk maintains the host-microbial homeostasis. Diet, age, diet, stress and diseases cause increases or decreases in relative abundance and diversity bacterial specie of GI and other body sites. Studies in animal models and humans have shown that a persistent imbalance of gut's microbial community, named dysbiosis, relates to inflammatory bowel diseases (IBD), irritable bowel syndrome (IBS), diabetes, obesity, cancer, cardiovascular and central nervous system disorders. Notably specific bacterial communities are promising clinical target to treat inflammatory and infectious diseases. In this context, intestinal microbiota transplantation (IMT) is one optional treatment for IBD, in particular to patients with recurrent Clostridium difficile-induced pseudo-membrane colitis. Here we discuss on recent discoveries linking whole gut microbiome dysbiosis to metabolic and inflammatory diseases and potential prophylactic and therapeutic applications of faecal and phage therapy, probiotic and prebiotic diets.
MeSH term(s)	Animals ; Dysbiosis/microbiology ; Gastrointestinal Microbiome ; Humans ; Immune System ; Inflammation ; Intestines/microbiology
Language	English
Publishing date	2018-12-07
Publishing country	Switzerland
Document type	Journal Article
ISSN	1664-431X
ISSN	1664-431X
DOI	10.1007/978-3-319-74932-7_13
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Article ; Online: Gut Microbiome Dysbiosis and Immunometabolism: New Frontiers for Treatment of Metabolic Diseases.

Belizário, José E / Faintuch, Joel / Garay-Malpartida, Miguel

Mediators of inflammation

2018 Volume 2018, Page(s) 2037838

Abstract: Maintenance of healthy human metabolism depends on a symbiotic consortium among bacteria, archaea, viruses, fungi, and host eukaryotic cells throughout the human gastrointestinal tract. Microbial communities provide the enzymatic machinery and the ... ...

Abstract	Maintenance of healthy human metabolism depends on a symbiotic consortium among bacteria, archaea, viruses, fungi, and host eukaryotic cells throughout the human gastrointestinal tract. Microbial communities provide the enzymatic machinery and the metabolic pathways that contribute to food digestion, xenobiotic metabolism, and production of a variety of bioactive molecules. These include vitamins, amino acids, short-chain fatty acids (SCFAs), and metabolites, which are essential for the interconnected pathways of glycolysis, the tricarboxylic acid/Krebs cycle, oxidative phosphorylation (OXPHOS), and amino acid and fatty acid metabolism. Recent studies have been elucidating how nutrients that fuel the metabolic processes impact on the ways immune cells, in particular, macrophages, respond to different stimuli under physiological and pathological conditions and become activated and acquire a specialized function. The two major inflammatory phenotypes of macrophages are controlled through differential consumption of glucose, glutamine, and oxygen. M1 phenotype is triggered by polarization signal from bacterial lipopolysaccharide (LPS) and Th1 proinflammatory cytokines such as interferon-
MeSH term(s)	Animals ; Dysbiosis/metabolism ; Dysbiosis/microbiology ; Gastrointestinal Microbiome/physiology ; Humans ; Macrophages/metabolism ; Metabolic Diseases/metabolism ; Metabolic Diseases/microbiology
Language	English
Publishing date	2018-12-09
Publishing country	United States
Document type	Journal Article ; Review
ZDB-ID	1137605-3
ISSN	1466-1861 ; 0962-9351
ISSN (online)	1466-1861
ISSN	0962-9351
DOI	10.1155/2018/2037838
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Article ; Online: Effect of irrigation acid solutions on cleaning and bond strength to post-space dentin.

Alencar, C de Melo / Zaniboni, J Ferrari / Besegato, J Felipe / Barros, A Patricia Oliveira / Gélio, M Bena / Belizário, L Garcia / Godoy, E Maximiliano Fernandez / Kuga, M Carlos

European journal of oral sciences

2023 Volume 131, Issue 4, Page(s) e12939

Abstract: This study evaluated the effects of irrigating solutions containing 5% boric acid + 1% citric acid or 1% peracetic acid + high concentration hydrogen peroxide on root cleaning and bond strength of cementation systems after 24 h and 6 months of glass ... ...

Abstract	This study evaluated the effects of irrigating solutions containing 5% boric acid + 1% citric acid or 1% peracetic acid + high concentration hydrogen peroxide on root cleaning and bond strength of cementation systems after 24 h and 6 months of glass fiber post cementation. One hundred and twenty roots were endodontically treated. The specimens were randomized into one of four treatments (n = 10): DW (distilled water); NaOCl
MeSH term(s)	Dental Bonding ; Dental Pulp Cavity ; Dentin ; Edetic Acid ; Hydrogen Peroxide ; Materials Testing ; Peracetic Acid ; Post and Core Technique ; Resin Cements/chemistry ; Humans
Chemical Substances	boric acid (R57ZHV85D4) ; Edetic Acid (9G34HU7RV0) ; Hydrogen Peroxide (BBX060AN9V) ; Peracetic Acid (I6KPI2E1HD) ; Resin Cements
Language	English
Publishing date	2023-06-09
Publishing country	England
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	1224820-4
ISSN	1600-0722 ; 0909-8836
ISSN (online)	1600-0722
ISSN	0909-8836
DOI	10.1111/eos.12939
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Article ; Online: Uniformity of water distribution in sprinkler irrigation mini-cannons in a high Andean community in Peru

Clavitea Abigael / Mamani J.A. / Huaquisto E. / Alfaro-Alejo Roberto / Belizario G.

E3S Web of Conferences, Vol 434, p

2023 Volume 03028

Abstract: The objective of the present work was to determine the uniformity of water distribution through mini-irrigation cannons in conditions of the Peruvian altiplano, applying the formulas for the Christiansen Uniformity Coefficient (CUC) and the Distribution ... ...

Abstract	The objective of the present work was to determine the uniformity of water distribution through mini-irrigation cannons in conditions of the Peruvian altiplano, applying the formulas for the Christiansen Uniformity Coefficient (CUC) and the Distribution Coefficient (DU) and to interpret the incidence of wind on water distribution at three different times during the day (5:30-7:30, 12-14 and 16-18 hours). Necessary climatological information, field rainfall tests, emitter pressure, and flow, wind speed were collected to evaluate their influence on water application. Variable CUC and distribution uniformity results were obtained at the level of four demonstration plots, the maximum and minimum CUC was 87.42% and 55.34%, while the DU resulted with a maximum of 80.79% and 26. 88% minimum; it is worth mentioning that in the last two schedules, results were obtained that show a poor water distribution; while winds less than 2 m/s favored the uniform distribution of water applied through the sprinklers, affirming that it was possible to obtain an acceptable water distribution uniformity at the plot level considering the irrigation schedule.
Keywords	Environmental sciences ; GE1-350
Language	English
Publishing date	2023-01-01T00:00:00Z
Publisher	EDP Sciences
Document type	Article ; Online
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Article ; Online: Modulation of procaspase-7 self-activation by PEST amino acid residues of the N-terminal prodomain and intersubunit linker.

Alves, Juliano / Garay-Malpartida, Miguel / Occhiucci, João M / Belizário, José E

Biochemistry and cell biology = Biochimie et biologie cellulaire

2017 , Page(s) 1–10

Abstract: Procaspase-7 zymogen polypeptide is composed of a short prodomain, a large subunit (p20), and a small subunit (p10) connected to an intersubunit linker. Caspase-7 is activated by an initiator caspase-8 and -9, or by autocatalysis after specific cleavage ... ...

Abstract	Procaspase-7 zymogen polypeptide is composed of a short prodomain, a large subunit (p20), and a small subunit (p10) connected to an intersubunit linker. Caspase-7 is activated by an initiator caspase-8 and -9, or by autocatalysis after specific cleavage at IQAD
Language	English
Publishing date	2017-06-28
Publishing country	Canada
Document type	Journal Article
ZDB-ID	54104-7
ISSN	1208-6002 ; 0829-8211
ISSN (online)	1208-6002
ISSN	0829-8211
DOI	10.1139/bcb-2016-0220
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Article ; Online: Clinical presentation and in-hospital prognosis of lung cancer patients presenting with suspected and confirmed COVID-19.

Peixoto, D / Callia, J P B / Bittencourt, M S / Generoso, G / Anastácio, V M / Alves-Jr, J L / Silva, T L da / Belizário, J C / Araújo, B L M / Ho, W / Diz, M D P E / Hoff, P M / Abdala, E / Ibrahim, K Y

Brazilian journal of medical and biological research = Revista brasileira de pesquisas medicas e biologicas

2022 Volume 55, Page(s) e12140

Abstract: We sought to compare the clinical presentation and prognosis of patients with lung cancer and confirmed COVID-19 infection to those with negative RT-PCR SARS-CoV-2 results. We included patients with confirmed lung cancer and suspected COVID-19 who ... ...

Abstract	We sought to compare the clinical presentation and prognosis of patients with lung cancer and confirmed COVID-19 infection to those with negative RT-PCR SARS-CoV-2 results. We included patients with confirmed lung cancer and suspected COVID-19 who presented to the emergency department. The primary outcome was in-hospital mortality and secondary outcomes included admission to intensive care unit (ICU) or mechanical ventilation. We analyzed the characteristics according to RT-PCR results and primary outcome. We constructed a logistic regression for each RT-PCR result group to find potential predictors of the primary outcome. Among 110 individuals with confirmed lung cancer (65±9 years, 51% male), 38 patients had positive RT-PCR and 72 patients had negative RT-PCR. There was no difference between groups for any clinical characteristic or comorbidities though individuals with confirmed COVID-19 had higher functionality in the ECOG scale. Leucocytes and lymphocytes were lower in individuals with positive tests. The primary outcome occurred in 58 (53%) individuals, 37 (34%) were admitted to the ICU, and 29 (26%) required mechanical ventilation. Although mortality was similar between the two groups, individuals with confirmed COVID-19 were significantly more likely to be admitted to the ICU or receive mechanical ventilation. Only lower lymphocytes and higher CRP were significantly associated with higher mortality. The clinical presentation of COVID-19 in lung cancer is not sufficient to identify higher or lower probability groups among symptomatic individuals, the overall mortality is high irrespective of RT-PCR results, and lymphopenia on admission was associated with the diagnosis and prognosis for COVID-19.
MeSH term(s)	COVID-19/diagnosis ; Female ; Hospital Mortality ; Hospitals ; Humans ; Lung Neoplasms/diagnosis ; Male ; SARS-CoV-2
Language	English
Publishing date	2022-09-12
Publishing country	Brazil
Document type	Journal Article
ZDB-ID	786234-9
ISSN	1414-431X ; 0100-879X
ISSN (online)	1414-431X
ISSN	0100-879X
DOI	10.1590/1414-431X2022e12140
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Article ; Online: Effect of Different Irrigants on the Adhesive Interface and Influence on the Push Out Strength of Fiber Posts.

Belizario, L G / Piragine, T L / Girotto, A C / Gelio, M B / Pereira, J R / Fernandez, E / Kuga, M C

Operative dentistry

2022 Volume 47, Issue 5, Page(s) E211–E221

Abstract: Purpose: The aim of this study was to evaluate the effects of a new irrigant solution on the post space cleaning and the adhesive resistance of fiber posts.: Methods and materials: Eighty roots of bovine teeth were randomly allocated into eight ... ...

Abstract	Purpose: The aim of this study was to evaluate the effects of a new irrigant solution on the post space cleaning and the adhesive resistance of fiber posts. Methods and materials: Eighty roots of bovine teeth were randomly allocated into eight groups (n=10 for each group). Evaluations were performed in two different time points for each irrigant. The irrigants included a control group with distilled water (DW), 2.5% NaOCl and 17% EDTA (SH), 1% peracetic acid (PA), and 5% boric acid and 1% citric acid (EX). The time points were 24 hours (I-immediate) and 6 months (D-delayed). The push-out test was performed using a universal testing machine with a 5 kN load cell operating at a crosshead speed of 0.5 mm/minute. The dentinal cementation system was analyzed using a laser confocal microscope (LSM5, Zeiss, Jena, Germany), and incidence of residue on radicular dentin was evaluated by scanning electron microscopy (SEM). The incidence of residue was evaluated by the Kruskal-Wallis test and push-out bond strength and dentin penetrability were evaluated via a one-way analysis of variance (ANOVA) and Tukey tests (α=0.05). Results: The EX irrigation protocol demonstrated the lowest incidence of residue on the dentin surface (p<0.05), independently of the evaluated third. In the cervical and the middle post thirds, EXI, EXD, SHI, and SHD groups exhibited similar push-out bond strength values (p>0.05). EXI, EXD, PAI, and PAD exhibited the greatest dentinal penetrability of the cementation system in all the post thirds (p<0.05). Conclusions: A solution containing 5% boric acid and 1% citric acid can be a promising irrigant for radicular post space cleaning. It has adequate potential for cleaning the dentin surface without interfering with the adhesive interface between the dentin and the cementation system.
MeSH term(s)	Animals ; Boric Acids ; Cattle ; Citric Acid/analysis ; Citric Acid/pharmacology ; Dental Bonding/methods ; Dental Cements/therapeutic use ; Dental Pulp Cavity ; Dentin ; Disulfides ; Edetic Acid/chemistry ; Materials Testing ; Peracetic Acid/analysis ; Peracetic Acid/pharmacology ; Post and Core Technique ; Resin Cements/chemistry ; Resin Cements/therapeutic use ; Root Canal Irrigants/analysis ; Root Canal Irrigants/chemistry ; Root Canal Irrigants/therapeutic use ; Thiones ; Water
Chemical Substances	Boric Acids ; Dental Cements ; Disulfides ; Resin Cements ; Root Canal Irrigants ; Thiones ; Water (059QF0KO0R) ; Citric Acid (2968PHW8QP) ; Edetic Acid (9G34HU7RV0) ; Peracetic Acid (I6KPI2E1HD) ; boric acid (R57ZHV85D4) ; dixanthogen (RN4CQ46FDM)
Language	English
Publishing date	2022-09-19
Publishing country	United States
Document type	Journal Article
ZDB-ID	752995-8
ISSN	1559-2863 ; 0361-7734
ISSN (online)	1559-2863
ISSN	0361-7734
DOI	10.2341/21-038-L
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