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  1. Article ; Online: Ecophysiological steps of marine adaptation in extant and extinct non-avian tetrapods.

    Motani, Ryosuke / Vermeij, Geerat J

    Biological reviews of the Cambridge Philosophical Society

    2021  Volume 96, Issue 5, Page(s) 1769–1798

    Abstract: Marine reptiles and mammals are phylogenetically so distant from each other that their marine adaptations are rarely compared directly. We reviewed ecophysiological features in extant non-avian marine tetrapods representing 31 marine colonizations to ... ...

    Abstract Marine reptiles and mammals are phylogenetically so distant from each other that their marine adaptations are rarely compared directly. We reviewed ecophysiological features in extant non-avian marine tetrapods representing 31 marine colonizations to test whether there is a common pattern across higher taxonomic groups, such as mammals and reptiles. Marine adaptations in tetrapods can be roughly divided into aquatic and haline adaptations, each of which seems to follow a sequence of three steps. In combination, these six categories exhibit five steps of marine adaptation that apply across all clades except snakes: Step M1, incipient use of marine resources; Step M2, direct feeding in the saline sea; Step M3, water balance maintenance without terrestrial fresh water; Step M4, minimized terrestrial travel and loss of terrestrial feeding; and Step M5, loss of terrestrial thermoregulation and fur/plumage. Acquisition of viviparity is not included because there is no known case where viviparity evolved after a tetrapod lineage colonized the sea. A similar sequence is found in snakes but with the haline adaptation step (Step M3) lagging behind aquatic adaptation (haline adaptation is Step S5 in snakes), most likely because their unique method of water balance maintenance requires a supply of fresh water. The same constraint may limit the maximum body size of fully marine snakes. Steps M4 and M5 in all taxa except snakes are associated with skeletal adaptations that are mechanistically linked to relevant ecophysiological features, allowing assessment of marine adaptation steps in some fossil marine tetrapods. We identified four fossil clades containing members that reached Step M5 outside of stem whales, pinnipeds, sea cows and sea turtles, namely Eosauropterygia, Ichthyosauromorpha, Mosasauroidea, and Thalattosuchia, while five other clades reached Step M4: Saurosphargidae, Placodontia, Dinocephalosaurus, Desmostylia, and Odontochelys. Clades reaching Steps M4 and M5, both extant and extinct, appear to have higher species diversity than those only reaching Steps M1 to M3, while the total number of clades is higher for the earlier steps. This suggests that marine colonizers only diversified greatly after they minimized their use of terrestrial resources, with many lineages not reaching these advanced steps. Historical patterns suggest that a clade does not advance to Steps M4 and M5 unless these steps are reached early in the evolution of the clade. Intermediate forms before a clade reached Steps M4 and M5 tend to become extinct without leaving extant descendants or fossil evidence. This makes it difficult to reconstruct the evolutionary history of marine adaptation in many clades. Clades that reached Steps M4 and M5 tend to last longer than other marine tetrapod clades, sometimes for more than 100 million years.
    MeSH term(s) Adaptation, Physiological ; Animals ; Biological Evolution ; Cattle ; Female ; Fossils ; Phylogeny ; Reptiles/anatomy & histology ; Reptiles/genetics
    Language English
    Publishing date 2021-04-26
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 1423558-4
    ISSN 1469-185X ; 0006-3231 ; 1464-7931
    ISSN (online) 1469-185X
    ISSN 0006-3231 ; 1464-7931
    DOI 10.1111/brv.12724
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Amniote metabolism and the evolution of endothermy.

    Motani, Ryosuke / Gold, David A / Carlson, Sandra J / Vermeij, Geerat J

    Nature

    2023  Volume 621, Issue 7977, Page(s) E1–E3

    MeSH term(s) Animals ; Dinosaurs ; Fossils
    Language English
    Publishing date 2023-09-06
    Publishing country England
    Document type Letter ; Comment
    ZDB-ID 120714-3
    ISSN 1476-4687 ; 0028-0836
    ISSN (online) 1476-4687
    ISSN 0028-0836
    DOI 10.1038/s41586-023-06411-y
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Chocolate brownies and calorie restriction: the sweetest paradox?

    Oudmaijer, C A J / Pol, R A / Minnee, R C / Vermeij, W P / IJzermans, J N M

    BMJ (Clinical research ed.)

    2023  Volume 383, Page(s) 2585

    MeSH term(s) Humans ; Chocolate ; Caloric Restriction ; Cacao ; Taste
    Language English
    Publishing date 2023-12-20
    Publishing country England
    Document type Journal Article
    ZDB-ID 1362901-3
    ISSN 1756-1833 ; 0959-8154 ; 0959-8146 ; 0959-8138 ; 0959-535X ; 1759-2151
    ISSN (online) 1756-1833
    ISSN 0959-8154 ; 0959-8146 ; 0959-8138 ; 0959-535X ; 1759-2151
    DOI 10.1136/bmj.p2585
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: The outcome of the forensic triage preceding disaster victim identification in the downing of Malaysia Airlines flight 17.

    Vermeij, Erwin / Zoon, Peter / Gerretsen, Reza / Otieno-Alego, Vincent

    Forensic sciences research

    2022  Volume 7, Issue 3, Page(s) 566–575

    Abstract: Malaysia Airlines flight 17 crashed on 17 July 2014 while flying over an area of armed conflict in eastern Ukraine. The first forensic trace evidence was collected after the human remains were transferred to a safe location in the Netherlands for ... ...

    Abstract Malaysia Airlines flight 17 crashed on 17 July 2014 while flying over an area of armed conflict in eastern Ukraine. The first forensic trace evidence was collected after the human remains were transferred to a safe location in the Netherlands for identification and repatriation. Disaster victim identification processes were therefore undertaken in concert with the forensic investigation. Prior to these processes, X-ray and computed tomography scanners were used to reveal foreign objects in the human remains, and a large number of these fragments were recovered after the forensic triage. A distinct group of metal fragments was identified as being potential remnants of high-energy foreign objects. Forensic analysis revealed that they were explosively deformed unalloyed steel fragments, some of which had shapes consistent with pre-formed metal fragments found in a 9N314M warhead used in Buk SA-11 missiles. Furthermore, thin film deposits of cockpit glass and aluminium were identified on the most heavily deformed side of some of the explosively deformed metal fragments, suggesting they came from outside the airplane. These findings supported early suspicions that Malaysia Airlines flight 17 was struck by a Buk SA-11 missile. KeypointsA multidisciplinary approach for combined identification and forensic investigation of human remains after a mass fatality incident.The combined use of complementary X-ray techniques for detection and provisional characterization of foreign objects in human remains.The use of sensitive and highly discriminative state of the art techniques for analysing foreign objects recovered from human remains.
    Language English
    Publishing date 2022-11-04
    Publishing country England
    Document type Case Reports
    ZDB-ID 2885963-7
    ISSN 2471-1411 ; 2096-1790
    ISSN (online) 2471-1411
    ISSN 2096-1790
    DOI 10.1080/20961790.2022.2043611
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Book ; Online: Crystallographic slip activity fields identified automatically from DIC data, even for intersecting, diffuse and cross slip

    Vermeij, Tijmen / Peerlings, Ron / Geers, Marc / Hoefnagels, Johan

    2022  

    Abstract: Crystallographic slip system identification methods are widely employed to characterize the fine scale deformation of metals. While powerful and widely employed, they usually rely on the occurrence of discrete slip bands with clear slip traces and ... ...

    Abstract Crystallographic slip system identification methods are widely employed to characterize the fine scale deformation of metals. While powerful and widely employed, they usually rely on the occurrence of discrete slip bands with clear slip traces and struggle when mechanisms such as cross-slip, curved slip, diffuse slip and/or intersecting slip occur. This paper proposes a novel slip system identification framework in which the measured displacement gradient fields (from Digital Image Correlation) are matched with the kinematics of one or multiple combined slip systems. To identify the amounts of slip that conform to the measured kinematics, an optimization problem is solved for every datapoint individually, resulting in a slip activity field for every considered slip system. The identification framework is demonstrated and validated on an HCP virtual experiment, for discrete and diffuse slip, incorporating 24 slip systems. Experimental case studies on FCC and BCC metals show how full-field identification of discrete slip, diffuse slip and cross-slip becomes feasible, even when considering 48 slip systems for BCC. Moreover, the methodology is extended into a dedicated cross-slip identification method, which directly yields the orientation of the local slip plane trace orientation, purely based on the measured kinematics and on one or two chosen slip directions. For even more challenging cases revealing a persistent uncertainty in the slip identification, a two-step identification approach can be employed, as is demonstrated on a highly challenging HCP virtual experiment.

    Comment: submitted for publication; 22 pages, 11 figures
    Keywords Condensed Matter - Materials Science
    Subject code 621
    Publishing date 2022-07-26
    Publishing country us
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  6. Article ; Online: Different Purkinje cell pathologies cause specific patterns of progressive gait ataxia in mice.

    Jaarsma, Dick / Birkisdóttir, Maria B / van Vossen, Randy / Oomen, Demi W G D / Akhiyat, Oussama / Vermeij, Wilbert P / Koekkoek, Sebastiaan K E / De Zeeuw, Chris I / Bosman, Laurens W J

    Neurobiology of disease

    2024  Volume 192, Page(s) 106422

    Abstract: Gait ataxia is one of the most common and impactful consequences of cerebellar dysfunction. Purkinje cells, the sole output neurons of the cerebellar cortex, are often involved in the underlying pathology, but their specific functions during locomotor ... ...

    Abstract Gait ataxia is one of the most common and impactful consequences of cerebellar dysfunction. Purkinje cells, the sole output neurons of the cerebellar cortex, are often involved in the underlying pathology, but their specific functions during locomotor control in health and disease remain obfuscated. We aimed to describe the effect of gradual adult-onset Purkinje cell degeneration on gaiting patterns in mice, and to determine whether two different mechanisms that both lead to Purkinje cell degeneration cause different patterns in the development of gait ataxia. Using the ErasmusLadder together with a newly developed limb detection algorithm and machine learning-based classification, we subjected mice to a challenging locomotor task with detailed analysis of single limb parameters, intralimb coordination and whole-body movement. We tested two Purkinje cell-specific mouse models, one involving stochastic cell death due to impaired DNA repair mechanisms (Pcp2-Ercc1
    MeSH term(s) Humans ; Mice ; Animals ; Purkinje Cells/metabolism ; Gait Ataxia/metabolism ; Gait Ataxia/pathology ; Mice, Transgenic ; Spinocerebellar Ataxias/genetics ; Neurons/pathology ; Cerebellum/pathology ; Disease Models, Animal
    Language English
    Publishing date 2024-01-28
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1211786-9
    ISSN 1095-953X ; 0969-9961
    ISSN (online) 1095-953X
    ISSN 0969-9961
    DOI 10.1016/j.nbd.2024.106422
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Book ; Online: Towards eliminating tail docking of pigs in the Netherlands

    Hoste, Robert / Hoofs, Anita / Benus, Mariël / Vermeij, Izak / van Asseldonk, Marcel / Verheijen, Kiki

    Exploration of economic aspects and opportunities for implementation

    2023  

    Abstract: For the transition towards pig farming without tail docking, an analysis has been performed of the cost increase, of conditions for supply chain implementation, and of the possibilities and feasibility of a calamity fund. Costs are mounting up to €26 per ...

    Abstract For the transition towards pig farming without tail docking, an analysis has been performed of the cost increase, of conditions for supply chain implementation, and of the possibilities and feasibility of a calamity fund. Costs are mounting up to €26 per delivered pig, and to €29 per pig during the learning phase. Under the assumption that 5-15% of the pigs will have tail damage and thus will not be eligible for compensation, a remuneration of €28-31 per pig with undocked tail in good condition is necessary to cover costs on farm level. This derives from a model-based analysis, where assumptions were based on literature and interviews.

    Voor de transitie naar een varkenshouderij zonder couperen van staarten zijn berekeningen gedaan naar het effect op de kosten voor varkenshouders, naar voorwaarden voor implementatie in de keten, en naar mogelijkheden en de haalbaarheid van een calamiteitenfonds. De kosten voor het houden van dieren met ongecoupeerde staarten lopen op tot 26 euro per afgeleverd varken, en tot 29 euro per afgeleverd varken gedurende de leerfase. Aannemend dat er voor 5-15% van de varkens geen staartenbonus zal worden betaald, in verband met staartschade, bedraagt de benodigde vergoeding 28-31 euro per goedgekeurd varken om de kosten te dekken van het houden van varkens met ongecoupeerde staarten. Dit is gebaseerd op modelmatige berekeningen, waarbij literatuur en interviews zijn gebruikt voor de aannames.
    Keywords Life Science
    Language English
    Publisher Wageningen Economic Research
    Publishing country nl
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  8. Book ; Online: Op weg naar ongecoupeerde varkensstaarten in Nederland

    Hoste, Robert / Hoofs, Anita / Benus, Mariël / Vermeij, Izak / van Asseldonk, Marcel / Verheijen, Kiki

    verkenning van economische aspecten en mogelijkheden voor implementatie

    2023  

    Abstract: For the transition towards pig farming without tail docking, an analysis has been performed of the cost increase, of conditions for supply chain implementation, and of opportunities and the feasibility of a calamity fund. Costs are mounting up to 26 ... ...

    Abstract For the transition towards pig farming without tail docking, an analysis has been performed of the cost increase, of conditions for supply chain implementation, and of opportunities and the feasibility of a calamity fund. Costs are mounting up to 26 euros per delivered pig, and to 29 euros per pig during the learning phase. Under the assumption that 5-15% of the pigs will have tail damage and thus will not be eligible for compensation, a remuneration of 28-31 euros per pig with undocked tail in good condition is necessary to cover costs on farm level. This derives from a model-based analysis, where assumptions were based on literature and interviews.

    Voor de transitie naar een varkenshouderij zonder couperen van staarten zijn berekeningen gedaan naar het effect op de kosten voor varkenshouders, naar voorwaarden voor implementatie in de keten, en naar mogelijkheden en de haalbaarheid van een calamiteitenfonds. De kosten voor het houden van dieren met ongecoupeerde staarten lopen op tot 26 euro per afgeleverd varken, en tot 29 euro per afgeleverd varken gedurende de leerfase. Aannemend dat er voor 5-15% van de varkens geen staartenbonus zal worden betaald, in verband met staartschade, bedraagt de benodigde vergoeding 28-31 euro per goedgekeurd varken om de kosten te dekken van het houden van varkens met ongecoupeerde staarten. Dit is gebaseerd op modelmatige berekeningen, waarbij literatuur en interviews zijn gebruikt voor de aannames.
    Keywords Life Science
    Language Dutch
    Publisher Wageningen Economic Research
    Publishing country nl
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Article ; Online: Short-term paleogeographic reorganizations and climate events shaped diversification of North American freshwater gastropods over deep time.

    Neubauer, Thomas A / Harzhauser, Mathias / Hartman, Joseph H / Silvestro, Daniele / Scotese, Christopher R / Czaja, Alexander / Vermeij, Geerat J / Wilke, Thomas

    Scientific reports

    2022  Volume 12, Issue 1, Page(s) 15572

    Abstract: What controls species diversity and diversification is one of the major questions in evolutionary biology and paleontology. Previous studies have addressed this issue based on various plant and animal groups, geographic regions, and time intervals. ... ...

    Abstract What controls species diversity and diversification is one of the major questions in evolutionary biology and paleontology. Previous studies have addressed this issue based on various plant and animal groups, geographic regions, and time intervals. However, as most previous research focused on terrestrial or marine ecosystems, our understanding of the controls on diversification of biota (and particularly invertebrates) in freshwater environments in deep time is still limited. Here, we infer diversification rates of North American freshwater gastropods from the Late Triassic to the Pleistocene and explore potential links between shifts in speciation and extinction and major changes in paleogeography, climate, and biotic interactions. We found that variation in the speciation rate is best explained by changes in continental fragmentation, with rate shifts coinciding with major paleogeographic reorganizations in the Mesozoic, in particular the retreat of the Sundance Sea and subsequent development of the Bighorn wetland and the advance of the Western Interior Seaway. Climatic events in the Cenozoic (Middle Eocene Climate Optimum, Miocene Climate Optimum) variably coincide with shifts in speciation and extinction as well, but no significant long-term association could be detected. Similarly, no influence of diversity dependence was found across the entire time frame of ~ 214 Myr. Our results indicate that short-term climatic events and paleogeographic changes are relevant to the diversification of continental freshwater biota, while long-term trends have limited effect.
    MeSH term(s) Animals ; Biodiversity ; Ecosystem ; Fresh Water ; Gastropoda ; North America ; Phylogeny
    Language English
    Publishing date 2022-09-16
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-022-19759-4
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Book ; Online: Analyse risicofactoren welzijn en gezondheid vleeskuikens

    van Emous, R.A. / Vermeij, I.

    2020  

    Abstract: In dit rapport worden de resultaten gepresenteerd van een deskstudie bestaande uit expertkennis en literatuurstudie met als doel om de risicofactoren voor dierenwelzijn- en diergezondheidsindicatoren bij vleeskuikens in kaart te brengen. Dit onderzoek is ...

    Abstract In dit rapport worden de resultaten gepresenteerd van een deskstudie bestaande uit expertkennis en literatuurstudie met als doel om de risicofactoren voor dierenwelzijn- en diergezondheidsindicatoren bij vleeskuikens in kaart te brengen. Dit onderzoek is uitgevoerd door Wageningen Livestock Research binnen het kader van de Publiek Private Samenwerking (PPS) "Vital Chick Chain” (BO-63-001-032). Dit project is een samenwerking tussen het Ministerie van Landbouw, Natuur en Voedselkwaliteit en een consortium van verschillende partijen. Uit het onderzoek blijkt dat de uitval (1e week en totaal) sterk beïnvloed wordt door het management en gezondheid van de vleeskuikenouderdieren. Daarnaast is het broedproces en het management op het vleeskuikenbedrijf belangrijk voor de uitval van de vleeskuikens. De primaire oorzaak van voetzoollaesies is de strooiselkwaliteit en alle factoren die daarmee samenhangen. Het optreden van borstspierafwijkingen bij vleeskuikens wordt vooral veroorzaakt door te hoge of onregelmatige groei (onder invloed van voeding) in combinatie met verhoogde activiteit en stress.
    Keywords Life Science
    Language Dutch
    Publisher Wageningen Livestock Research
    Publishing country nl
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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