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  1. Article ; Online: Phosphate Recovery from Urban Sewage by the Biofilm Sequencing Batch Reactor Process: Key Factors in Biofilm Formation and Related Mechanisms.

    Zheng, Chao / Zhang, Jun / Ni, Min / Pan, Yang

    Environmental research

    2024  , Page(s) 118985

    Abstract: The biofilm sequencing batch reactor (BSBR) technique has been deployed in the laboratory to enrich phosphorus from simulated wastewater, but it is still not clear what its performance will be when real world sewage is used. In this work, the effluent ... ...

    Abstract The biofilm sequencing batch reactor (BSBR) technique has been deployed in the laboratory to enrich phosphorus from simulated wastewater, but it is still not clear what its performance will be when real world sewage is used. In this work, the effluent from the multi-stage anoxic-oxic (AO) activated sludge process at a sewage plant was used as the feed water for a BSBR pilot system, which had three reactors operating at different levels of dissolved oxygen (DO). The phosphorus adsorption and release, the biofilm growth, and the extracellular polymeric substances (EPS) components and contents were examined. The microbial communities and the signaling molecules N-acyl-l-homoserine lactones (AHLs) were also analyzed. Gratifyingly, the BSBR process successfully processed the treated sewage, and the biofilm developed phosphorus accumulation capability within 40 days. After entering stable operation, the system concentrated phosphate from 2.59 ± 0.77 mg/L in the influent to as much as 81.64 mg/L in the recovery liquid. Sludge discharge had profound impacts on all aspects of BSBR, and it was carried out successfully when the phosphorus absorption capacity of the biofilm alone was comparable to that of the reactor containing the activated sludge. Shortly after the sludge discharge, the phosphate concentration of the recovery liquid surged from 50 to 140 mg/L, the biofilm thickness grew from 20.56 to 67.32 μm, and the diversity of the microbial population plunged. Sludge discharge stimulated Candidatus competibacter to produce a large amount of AHLs, which was key in culturing the biofilm. Among the AHLs, both C10-HSL and 3OC12-HSL were significantly positively correlated with EPS and the abundance of Candidatus competibacter. The current results demonstrated BSBR as a viable option to enrich phosphorus from real world sewage with low phosphorus content and fluctuating chemistry. The mechanistic explorations also provided theoretical guidance for cultivating phosphorus-accumulating biofilms.
    Language English
    Publishing date 2024-04-23
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 205699-9
    ISSN 1096-0953 ; 0013-9351
    ISSN (online) 1096-0953
    ISSN 0013-9351
    DOI 10.1016/j.envres.2024.118985
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Screening immune-related blood biomarkers for DKD-related HCC using machine learning.

    Chen, Chao / Xie, Zhinan / Ni, Ying / He, Yuxi

    Frontiers in immunology

    2024  Volume 15, Page(s) 1339373

    Abstract: Background: Diabetes mellitus is a significant health problem worldwide, often leading to diabetic kidney disease (DKD), which may also influence the occurrence of hepatocellular carcinoma (HCC). However, the relationship and diagnostic biomarkers ... ...

    Abstract Background: Diabetes mellitus is a significant health problem worldwide, often leading to diabetic kidney disease (DKD), which may also influence the occurrence of hepatocellular carcinoma (HCC). However, the relationship and diagnostic biomarkers between DKD and HCC are unclear.
    Methods: Using public database data, we screened DKD secretory RNAs and HCC essential genes by limma and WGCNA. Potential mechanisms, drugs, and biomarkers for DKD-associated HCC were identified using PPI, functional enrichment, cMAP, and machine learning algorithms, and a diagnostic nomogram was constructed. Then, ROC, calibration, and decision curves were used to evaluate the diagnostic performance of the nomograms. In addition, immune cell infiltration in HCC was explored using CIBERSORT. Finally, the detectability of critical genes in blood was verified by qPCR.
    Results: 104 DEGs associated with HCC using WGCNA were identified. 101 DEGs from DKD were predicated on secreting into the bloodstream with Exorbase datasets. PPI analysis identified three critical modules considered causative genes for DKD-associated HCC, primarily involved in inflammation and immune regulation. Using lasso and RM, four hub genes associated with DKD-associated HCC were identified, and a diagnostic nomogram confirmed by DCA curves was established. The results of immune cell infiltration showed immune dysregulation in HCC, which was associated with the expression of four essential genes. PLVAP was validated by qPCR as a possible blood-based diagnostic marker for DKD-related HCC.
    Conclusion: We revealed the inflammatory immune pathways of DKD-related HCC and developed a diagnostic nomogram for HCC based on PLVAP, C7, COL15A1, and MS4A6A. We confirmed with qPCR that PLVAP can be used as a blood marker to assess the risk of HCC in DKD patients.
    MeSH term(s) Humans ; Carcinoma, Hepatocellular/etiology ; Carcinoma, Hepatocellular/genetics ; Liver Neoplasms/etiology ; Liver Neoplasms/genetics ; Algorithms ; Biomarkers ; Machine Learning
    Chemical Substances Biomarkers
    Language English
    Publishing date 2024-01-22
    Publishing country Switzerland
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2606827-8
    ISSN 1664-3224 ; 1664-3224
    ISSN (online) 1664-3224
    ISSN 1664-3224
    DOI 10.3389/fimmu.2024.1339373
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: A Novel Algorithm for Streamlining Diagnosis of Advanced Liver Fibrosis in CHB Patients with Concurrent Hepatic Steatosis.

    Xu, Xiaoming / Rui, Fajuan / Ni, Wenjing / Wu, Chao / Shi, Junping / Li, Jie

    Journal of clinical and translational hepatology

    2024  Volume 12, Issue 2, Page(s) 222–226

    Language English
    Publishing date 2024-01-29
    Publishing country United States
    Document type Journal Article
    ZDB-ID 3019822-7
    ISSN 2310-8819 ; 2225-0719
    ISSN (online) 2310-8819
    ISSN 2225-0719
    DOI 10.14218/JCTH.2023.00362
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: A young woman with

    Li, Kun-Jie / Lin, Song-Fa / Guo, Yan-Ni / Xu, Tian-Xing / Ji, Chao

    Clinical case reports

    2024  Volume 12, Issue 4, Page(s) e8569

    Abstract: In outpatient settings, ...

    Abstract In outpatient settings,
    Language English
    Publishing date 2024-04-11
    Publishing country England
    Document type Case Reports
    ZDB-ID 2740234-4
    ISSN 2050-0904
    ISSN 2050-0904
    DOI 10.1002/ccr3.8569
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: [Incidence and risk factors of congenital ventricular septal defect in Qingdao].

    Chao, C / Li, G J / Wang, G L / Wu, Q / Ni, W / Xing, Q S

    Zhonghua yi xue za zhi

    2023  Volume 103, Issue 24, Page(s) 1824–1829

    Abstract: Objective: ...

    Abstract Objective:
    MeSH term(s) Infant ; Infant, Newborn ; Humans ; Male ; Female ; Pregnancy ; Incidence ; Premature Birth ; Prospective Studies ; Heart Septal Defects, Ventricular/epidemiology ; Heart Defects, Congenital ; Risk Factors
    Language Chinese
    Publishing date 2023-06-26
    Publishing country China
    Document type English Abstract ; Journal Article
    ZDB-ID 132513-9
    ISSN 0376-2491
    ISSN 0376-2491
    DOI 10.3760/cma.j.cn112137-20230220-00241
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: One-stage thyroid cartilage laryngotracheal reconstruction for children <1 year of age with congenital subglottic stenosis.

    Chen, Chao / Ni, Yihua / Tan, Letian / Huang, Yue / Xu, Zheng-Min

    The Journal of laryngology and otology

    2024  , Page(s) 1–14

    Language English
    Publishing date 2024-04-30
    Publishing country England
    Document type Journal Article
    ZDB-ID 218299-3
    ISSN 1748-5460 ; 0022-2151
    ISSN (online) 1748-5460
    ISSN 0022-2151
    DOI 10.1017/S0022215124000653
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Sensor Scheduling for Remote State Estimation with Limited Communication Resources: A Time- and Event-Triggered Hybrid Approach.

    Ni, Yuqing / Liu, Xiaochen / Yang, Chao

    Sensors (Basel, Switzerland)

    2023  Volume 23, Issue 21

    Abstract: This paper proposes a time- and event-triggered hybrid scheduling for remote state estimation with limited communication resources. A smart sensor observes a physical process and decides whether to send the local state estimate to a remote estimator via ... ...

    Abstract This paper proposes a time- and event-triggered hybrid scheduling for remote state estimation with limited communication resources. A smart sensor observes a physical process and decides whether to send the local state estimate to a remote estimator via a wireless communication channel; the estimator computes the state estimate of the process according to the received data packets and the known scheduling mechanism. Based on the existing optimal time-triggered scheduling, we employ a stochastic event trigger to save precious communication chances and further improve the estimation performance. The minimum mean-squared error (MMSE) state estimate is derived since the Gaussian property is preserved. The estimation performance upper bound and communication rate are analyzed. The main results are illustrated by numerical examples.
    Language English
    Publishing date 2023-10-24
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2052857-7
    ISSN 1424-8220 ; 1424-8220
    ISSN (online) 1424-8220
    ISSN 1424-8220
    DOI 10.3390/s23218667
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Identification of crosstalk genes relating to ECM-receptor interaction genes in MASH and DN using bioinformatics and machine learning.

    Chen, Chao / He, Yuxi / Ni, Ying / Tang, Zhanming / Zhang, Wensheng

    Journal of cellular and molecular medicine

    2024  Volume 28, Issue 6, Page(s) e18156

    Abstract: This study aimed to identify genes shared by metabolic dysfunction-associated fatty liver disease (MASH) and diabetic nephropathy (DN) and the effect of extracellular matrix (ECM) receptor interaction genes on them. Datasets with MASH and DN were ... ...

    Abstract This study aimed to identify genes shared by metabolic dysfunction-associated fatty liver disease (MASH) and diabetic nephropathy (DN) and the effect of extracellular matrix (ECM) receptor interaction genes on them. Datasets with MASH and DN were downloaded from the Gene Expression Omnibus (GEO) database. Pearson's coefficients assessed the correlation between ECM-receptor interaction genes and cross talk genes. The coexpression network of co-expression pairs (CP) genes was integrated with its protein-protein interaction (PPI) network, and machine learning was employed to identify essential disease-representing genes. Finally, immuno-penetration analysis was performed on the MASH and DN gene datasets using the CIBERSORT algorithm to evaluate the plausibility of these genes in diseases. We found 19 key CP genes. Fos proto-oncogene (FOS), belonging to the IL-17 signalling pathway, showed greater centrality PPI network; Hyaluronan Mediated Motility Receptor (HMMR), belonging to ECM-receptor interaction genes, showed most critical in the co-expression network map of 19 CP genes; Forkhead Box C1 (FOXC1), like FOS, showed a high ability to predict disease in XGBoost analysis. Further immune infiltration showed a clear positive correlation between FOS/FOXC1 and mast cells that secrete IL-17 during inflammation. Combining the results of previous studies, we suggest a FOS/FOXC1/HMMR regulatory axis in MASH and DN may be associated with mast cells in the acting IL-17 signalling pathway. Extracellular HMMR may regulate the IL-17 pathway represented by FOS through the Mitogen-Activated Protein Kinase 1 (ERK) or PI3K-Akt-mTOR pathway. HMMR may serve as a signalling carrier between MASH and DN and could be targeted for therapeutic development.
    MeSH term(s) Humans ; Interleukin-17 ; Diabetic Nephropathies ; Phosphatidylinositol 3-Kinases ; Computational Biology ; Machine Learning
    Chemical Substances Interleukin-17 ; Phosphatidylinositol 3-Kinases (EC 2.7.1.-)
    Language English
    Publishing date 2024-03-04
    Publishing country England
    Document type Journal Article
    ZDB-ID 2074559-X
    ISSN 1582-4934 ; 1582-4934 ; 1582-1838
    ISSN (online) 1582-4934
    ISSN 1582-4934 ; 1582-1838
    DOI 10.1111/jcmm.18156
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article: [Environmental Benefits of Pollution and Carbon Reduction by Bus Fleet Electrification in Zhengzhou].

    Zou, Chao / Wang, Ya-Nan / Wu, Lin / He, Jing / Ni, Jing-Wei / Mao, Hong-Jun

    Huan jing ke xue= Huanjing kexue

    2024  Volume 45, Issue 3, Page(s) 1293–1303

    Abstract: Electrification of bus fleets is an effective approach to reducing transportation-related pollution and carbon emissions. Evaluating the impact of electrification on existing bus fleets can provide valuable insights for promoting full electrification of ... ...

    Abstract Electrification of bus fleets is an effective approach to reducing transportation-related pollution and carbon emissions. Evaluating the impact of electrification on existing bus fleets can provide valuable insights for promoting full electrification of public transportation in large cities. Utilizing the fuel life cycle method, we analyzed the CO
    Language Chinese
    Publishing date 2024-03-12
    Publishing country China
    Document type English Abstract ; Journal Article
    ISSN 0250-3301
    ISSN 0250-3301
    DOI 10.13227/j.hjkx.202304156
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Description and Genomic Characteristics of Diaphorobacter limosus sp. nov., Isolated from a Sewage-Treatment Plant.

    Yang, Kaiqing / Tan, Jialin / Jiang, Gengbo / Ni, Zhuobiao / Lin, Qingqi / Chao, Yuanqing / Ruan, Zhepu / Qiu, Rongliang

    Current microbiology

    2024  Volume 81, Issue 6, Page(s) 155

    Abstract: A Gram-stain-negative, rod-shaped, non-motile, catalase-positive, denitrifying bacterium, designated strain Y- ... ...

    Abstract A Gram-stain-negative, rod-shaped, non-motile, catalase-positive, denitrifying bacterium, designated strain Y-1
    MeSH term(s) Sewage/microbiology ; Phylogeny ; RNA, Ribosomal, 16S/genetics ; Base Composition ; DNA, Bacterial/genetics ; China ; Bacterial Typing Techniques ; Genome, Bacterial ; Fatty Acids/chemistry ; Comamonadaceae/genetics ; Comamonadaceae/classification ; Comamonadaceae/isolation & purification ; Sequence Analysis, DNA ; Nucleic Acid Hybridization
    Chemical Substances Sewage ; RNA, Ribosomal, 16S ; DNA, Bacterial ; Fatty Acids
    Language English
    Publishing date 2024-04-23
    Publishing country United States
    Document type Journal Article
    ZDB-ID 134238-1
    ISSN 1432-0991 ; 0343-8651
    ISSN (online) 1432-0991
    ISSN 0343-8651
    DOI 10.1007/s00284-024-03659-z
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