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  1. Article ; Online: H

    Takahari, Kosuke / Hidaka, Takayuki / Ueda, Yusuke / Izumi, Kanako / Harada, Yu / Susawa, Hitoshi / Kinoshita, Mirai / Itakura, Kiho / Utsunomiya, Hiroto / Kihara, Yasuki

    Circulation journal : official journal of the Japanese Circulation Society

    2019  Volume 83, Issue 12, Page(s) 2487–2493

    Abstract: Background: Both the H: Conclusions: The H ...

    Abstract Background: Both the H
    Conclusions: The H
    MeSH term(s) Adult ; Aged ; Aged, 80 and over ; Cross-Sectional Studies ; Early Diagnosis ; Echocardiography, Stress ; Exercise Test ; Exercise Tolerance ; Female ; Heart Failure/diagnosis ; Heart Failure/physiopathology ; Hemodynamics ; Humans ; Japan ; Male ; Middle Aged ; Nomograms ; Oxygen Consumption ; Predictive Value of Tests ; Reproducibility of Results ; Retrospective Studies ; Young Adult
    Language English
    Publishing date 2019-11-08
    Publishing country Japan
    Document type Journal Article
    ZDB-ID 2068090-9
    ISSN 1347-4820 ; 1346-9843
    ISSN (online) 1347-4820
    ISSN 1346-9843
    DOI 10.1253/circj.CJ-19-0699
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Clinical Utility of the H

    Hirano, Reina / Ikemura, Nobuhiro / Nguyen, Dan D / Jones, Philip G / Kimura, Takehiro / Katsumata, Yoshinori / Ueda, Ikuko / Takatsuki, Seiji / Spertus, John A / Kohsaka, Shun

    JACC. Heart failure

    2024  

    Language English
    Publishing date 2024-01-30
    Publishing country United States
    Document type Letter
    ZDB-ID 2705621-1
    ISSN 2213-1787 ; 2213-1779
    ISSN (online) 2213-1787
    ISSN 2213-1779
    DOI 10.1016/j.jchf.2023.12.011
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Manipulating Parallel and Perpendicular Multiphoton Transitions in H_{2} Molecules.

    Pan, Shengzhe / Zhang, Zhaohan / Xu, Liang / Zhang, Wenbin / Lu, Peifen / Ji, Qinying / Lin, Kang / Zhou, Lianrong / Lu, Chenxu / Ni, Hongcheng / Ruiz, Camilo / Ueda, Kiyoshi / He, Feng / Wu, Jian

    Physical review letters

    2023  Volume 130, Issue 14, Page(s) 143203

    Abstract: We demonstrate that dissociative ionization of H_{2} can be fully manipulated in an angle-time ... sequentially, parallel and perpendicular transitions of stretching H_{2} molecules, respectively ...

    Abstract We demonstrate that dissociative ionization of H_{2} can be fully manipulated in an angle-time-resolved fashion, employing a polarization-skewed (PS) laser pulse in which the polarization vector rotates. The leading and falling edges of the PS laser pulse, characterized by unfolded field polarization, trigger, sequentially, parallel and perpendicular transitions of stretching H_{2} molecules, respectively. These transitions result in counterintuitive proton ejections that deviate significantly from the laser polarization directions. Our findings demonstrate that the reaction pathways can be controlled through fine-tuning the time-dependent polarization of the PS laser pulse. The experimental results are well reproduced using an intuitive wave-packet surface propagation simulation method. This research highlights the potential of PS laser pulses as powerful tweezers to resolve and manipulate complex laser-molecule interactions.
    Language English
    Publishing date 2023-04-21
    Publishing country United States
    Document type Journal Article
    ZDB-ID 208853-8
    ISSN 1079-7114 ; 0031-9007
    ISSN (online) 1079-7114
    ISSN 0031-9007
    DOI 10.1103/PhysRevLett.130.143203
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: In vitro synthesis of oryzamutaic acid H using recombinant L-lysine ε-dehydrogenase from Agrobacterium tumefaciens.

    Horie, Yuta / Uchikata, Makoto / Ueda, Sachie / Yamahira, Gai / Hashimoto, Masaru / Sakamoto, Kimitoshi / Ito, Hiroyuki / Hamada, Shigeki

    Journal of biotechnology

    2024  Volume 385, Page(s) 42–48

    Abstract: ... the synthesis of oryzamutaic acid H at neutral pH in vitro. We synthesized 1.6 mg oryzamutaic acid H from 100 mg ... L-lysine. The synthesized oryzamutaic acid H exhibited UVA absorption, stability of temperature, and ... of oryzamutaic acid H in vitro and provides a basis for understanding the mechanisms of oryzamutaic acid ...

    Abstract Oryzamutaic acids, possessing a nitrogen-containing heterocyclic skeleton, have been isolated and identified from a rice mutant. Although oryzamutaic acids are expected to be functional ingredients, their functionality is difficult to evaluate, because of their wide variety and presence in trace amounts. Furthermore, how oryzamutaic acid is synthesized in vivo is unclear. Therefore, we developed a simple enzymatic synthesis method for these compounds in vitro. We focused on L-lysine ε-dehydrogenase (LysDH) from Agrobacterium tumefaciens, which synthesizes α-aminoadipate-δ-semialdehyde-a precursor of oryzamutaic acids. LysDH was cloned and expressed in Escherichia coli. Analysis of activity revealed that LysDH catalyzed the synthesis of oryzamutaic acid H at neutral pH in vitro. We synthesized 1.6 mg oryzamutaic acid H from 100 mg L-lysine. The synthesized oryzamutaic acid H exhibited UVA absorption, stability of temperature, and stability at a wide pH range. To our knowledge, this study is the first to report the enzymatic synthesis of oryzamutaic acid H in vitro and provides a basis for understanding the mechanisms of oryzamutaic acid synthesis in vivo.
    MeSH term(s) Agrobacterium tumefaciens/genetics ; Amino Acid Oxidoreductases ; Lysine ; Acids
    Chemical Substances lysine epsilon-dehydrogenase (EC 1.4.1.-) ; Amino Acid Oxidoreductases (EC 1.4.-) ; Lysine (K3Z4F929H6) ; Acids
    Language English
    Publishing date 2024-03-11
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 843647-2
    ISSN 1873-4863 ; 0168-1656 ; 1389-0352
    ISSN (online) 1873-4863
    ISSN 0168-1656 ; 1389-0352
    DOI 10.1016/j.jbiotec.2024.03.003
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Discovery of 2,6-Dihalopurines as Stomata Opening Inhibitors: Implication of an LRX-Mediated H

    Ueda, Ayaka / Aihara, Yusuke / Sato, Shinya / Kano, Keiko / Mishiro-Sato, Emi / Kitano, Hiroyuki / Sato, Ayato / Fujimoto, Kazuhiro J / Yanai, Takeshi / Amaike, Kazuma / Kinoshita, Toshinori / Itami, Kenichiro

    ACS chemical biology

    2023  Volume 18, Issue 2, Page(s) 347–355

    Abstract: ... their mechanistic study. Based on biological assays, AUs may involve in the pathway related with plasma membrane H ...

    Abstract Stomata are pores in the leaf epidermis of plants and their opening and closing regulate gas exchange and water transpiration. Stomatal movements play key roles in both plant growth and stress responses. In recent years, small molecules regulating stomatal movements have been used as a powerful tool in mechanistic studies, as well as key players for agricultural applications. Therefore, the development of new molecules regulating stomatal movement and the elucidation of their mechanisms have attracted much attention. We herein describe the discovery of 2,6-dihalopurines, AUs, as a new stomatal opening inhibitor, and their mechanistic study. Based on biological assays, AUs may involve in the pathway related with plasma membrane H
    MeSH term(s) Phosphorylation ; Plant Stomata ; Cell Membrane/metabolism ; Cell Wall/metabolism ; Proton-Translocating ATPases ; Arabidopsis Proteins/metabolism
    Chemical Substances Proton-Translocating ATPases (EC 3.6.3.14) ; Arabidopsis Proteins
    Language English
    Publishing date 2023-01-13
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ISSN 1554-8937
    ISSN (online) 1554-8937
    DOI 10.1021/acschembio.2c00771
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Characteristics of patients with COVID-19 who have deteriorating chest X-ray findings within 48 h: a retrospective cohort study.

    Kusumoto, Tatsuya / Chubachi, Shotaro / Namkoong, Ho / Tanaka, Hiromu / Lee, Ho / Otake, Shiro / Nakagawara, Kensuke / Fukushima, Takahiro / Morita, Atsuho / Watase, Mayuko / Asakura, Takanori / Masaki, Katsunori / Kamata, Hirofumi / Ishii, Makoto / Hasegawa, Naoki / Harada, Norihiro / Ueda, Tetsuya / Ueda, Soichiro / Ishiguro, Takashi /
    Arimura, Ken / Saito, Fukuki / Yoshiyama, Takashi / Nakano, Yasushi / Mutoh, Yoshikazu / Suzuki, Yusuke / Edahiro, Ryuya / Murakami, Koji / Sato, Yasunori / Okada, Yukinori / Koike, Ryuji / Kitagawa, Yuko / Tokunaga, Katsushi / Kimura, Akinori / Imoto, Seiya / Miyano, Satoru / Ogawa, Seishi / Kanai, Takanori / Fukunaga, Koichi

    Scientific reports

    2023  Volume 13, Issue 1, Page(s) 22054

    Abstract: ... within 48 h of admission. Rapid deterioration of CXR findings was an independent risk factor for death, most ...

    Abstract The severity of chest X-ray (CXR) findings is a prognostic factor in patients with coronavirus disease 2019 (COVID-19). We investigated the clinical and genetic characteristics and prognosis of patients with worsening CXR findings during early hospitalization. We retrospectively included 1656 consecutive Japanese patients with COVID-19 recruited through the Japan COVID-19 Task Force. Rapid deterioration of CXR findings was defined as increased pulmonary infiltrates in ≥ 50% of the lung fields within 48 h of admission. Rapid deterioration of CXR findings was an independent risk factor for death, most severe illness, tracheal intubation, and intensive care unit admission. The presence of consolidation on CXR, comorbid cardiovascular and chronic obstructive pulmonary diseases, high body temperature, and increased serum aspartate aminotransferase, potassium, and C-reactive protein levels were independent risk factors for rapid deterioration of CXR findings. Risk variant at the ABO locus (rs529565-C) was associated with rapid deterioration of CXR findings in all patients. This study revealed the clinical features, genetic features, and risk factors associated with rapid deterioration of CXR findings, a poor prognostic factor in patients with COVID-19.
    MeSH term(s) Humans ; COVID-19 ; Retrospective Studies ; X-Rays ; Radiography, Thoracic ; Lung
    Language English
    Publishing date 2023-12-12
    Publishing country England
    Document type Journal Article
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-023-49340-6
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  7. Article ; Online: Development of multiple AI pipelines that predict neoadjuvant chemotherapy response of breast cancer using H&E-stained tissues.

    Shen, Bin / Saito, Akira / Ueda, Ai / Fujita, Koji / Nagamatsu, Yui / Hashimoto, Mikihiro / Kobayashi, Masaharu / Mirza, Aashiq H / Graf, Hans Peter / Cosatto, Eric / Hazama, Shoichi / Nagano, Hiroaki / Sato, Eiichi / Matsubayashi, Jun / Nagao, Toshitaka / Cheng, Esther / Hoda, Syed Af / Ishikawa, Takashi / Kuroda, Masahiko

    The journal of pathology. Clinical research

    2023  Volume 9, Issue 3, Page(s) 182–194

    Abstract: In recent years, the treatment of breast cancer has advanced dramatically and neoadjuvant chemotherapy (NAC) has become a common treatment method, especially for locally advanced breast cancer. However, other than the subtype of breast cancer, no clear ... ...

    Abstract In recent years, the treatment of breast cancer has advanced dramatically and neoadjuvant chemotherapy (NAC) has become a common treatment method, especially for locally advanced breast cancer. However, other than the subtype of breast cancer, no clear factor indicating sensitivity to NAC has been identified. In this study, we attempted to use artificial intelligence (AI) to predict the effect of preoperative chemotherapy from hematoxylin and eosin images of pathological tissue obtained from needle biopsies prior to chemotherapy. Application of AI to pathological images typically uses a single machine-learning model such as support vector machines (SVMs) or deep convolutional neural networks (CNNs). However, cancer tissues are extremely diverse and learning with a realistic number of cases limits the prediction accuracy of a single model. In this study, we propose a novel pipeline system that uses three independent models each focusing on different characteristics of cancer atypia. Our system uses a CNN model to learn structural atypia from image patches and SVM and random forest models to learn nuclear atypia from fine-grained nuclear features extracted by image analysis methods. It was able to predict the NAC response with 95.15% accuracy on a test set of 103 unseen cases. We believe that this AI pipeline system will contribute to the adoption of personalized medicine in NAC therapy for breast cancer.
    MeSH term(s) Humans ; Female ; Breast Neoplasms/drug therapy ; Breast Neoplasms/pathology ; Artificial Intelligence ; Neoadjuvant Therapy/methods ; Machine Learning ; Chemotherapy, Adjuvant
    Language English
    Publishing date 2023-03-10
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2814357-7
    ISSN 2056-4538 ; 2056-4538
    ISSN (online) 2056-4538
    ISSN 2056-4538
    DOI 10.1002/cjp2.314
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  8. Article ; Online: Development of serological assays to identify Helicobacter suis and H. pylori infections

    Hidenori Matsui / Emiko Rimbara / Masato Suzuki / Kengo Tokunaga / Hidekazu Suzuki / Masaya Sano / Takashi Ueda / Hitoshi Tsugawa / Sohachi Nanjo / Akira Takeda / Makoto Sasaki / Shuichi Terao / Tsuyoshi Suda / Sae Aoki / Keigo Shibayama / Hiroyoshi Ota / Katsuhiro Mabe

    iScience, Vol 26, Iss 4, Pp 106522- (2023)

    2023  

    Abstract: ... Helicobacter species found in humans. Recent studies have suggested that H. suis infection has caused ... on H. suis urease activity often yield negative results, and there is no reliable method for diagnosing ... H. suis infection in clinical practice without gastric biopsy specimens. This study presents ...

    Abstract Summary: Helicobacter suis, hosted by hogs, is the most prevalent gastric non-Helicobacter pylori Helicobacter species found in humans. Recent studies have suggested that H. suis infection has caused many cases of gastric disease, but the transmission route from hogs remains unclear. Diagnostic methods based on H. suis urease activity often yield negative results, and there is no reliable method for diagnosing H. suis infection in clinical practice without gastric biopsy specimens. This study presents the world’s first use of whole-bacterial cell ELISA to simultaneously assess H. suis and H. pylori infections. The ELISAs showed high accuracy, with an area under the ROC curve of 0.96, 100% sensitivity, 92.6% specificity, 76.9% positive predictive value, and 100% negative predictive value for the H. suis test, and an area under the ROC curve of 0.92, 88.2% sensitivity, 87.5% specificity, 65.2% positive predictive value, and 96.6% negative predictive value for the H. pylori test.
    Keywords Diagnostic procedure ; Gastroenterology ; Virology ; Science ; Q
    Language English
    Publishing date 2023-04-01T00:00:00Z
    Publisher Elsevier
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Article ; Online: Discovery of Plant Growth Stimulants by C-H Arylation of 2-Azahypoxanthine.

    Kitano, Hiroyuki / Choi, Jae-Hoon / Ueda, Ayaka / Ito, Hideto / Hagihara, Shinya / Kan, Toshiyuki / Kawagishi, Hirokazu / Itami, Kenichiro

    Organic letters

    2018  Volume 20, Issue 18, Page(s) 5684–5687

    Abstract: A series of new AHX derivatives were synthesized by Pd-catalyzed C-H arylation. Their rice-growth ... of C-H functionalization chemistry to rapidly transform biologically active natural products into more ...

    Abstract A series of new AHX derivatives were synthesized by Pd-catalyzed C-H arylation. Their rice-growth-promoting activity was evaluated in vivo. Among the synthesized compounds, C8 phenyl-substituted AHX showed remarkable growth-promoting activity on rice. The present study shows the power and significant opportunity of C-H functionalization chemistry to rapidly transform biologically active natural products into more active compounds.
    Language English
    Publishing date 2018-09-04
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ISSN 1523-7052
    ISSN (online) 1523-7052
    DOI 10.1021/acs.orglett.8b02407
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  10. Article ; Online: Site-Selective Molecular Transformation: Acylation of Hydroxy Groups and C-H Amination.

    Ueda, Yoshihiro

    Chemical & pharmaceutical bulletin

    2021  Volume 69, Issue 10, Page(s) 931–944

    Abstract: ... the acylation of hydroxy groups and C-H amination, is summarized. Regarding the acylation of hydroxy groups ... syntheses of sugar-related natural and unnatural products. Regarding C-H amination, the discovery ...

    Abstract Control of site selectivity is an exciting direction for synthetic organic chemistry owing to the possibility of selective modification of multifunctionalized molecules, ultimately including biomacromolecules. In this review, our recent research related to site selectivity in two types of transformation, namely, the acylation of hydroxy groups and C-H amination, is summarized. Regarding the acylation of hydroxy groups, catalyst-controlled site selectivity enables unconventional retrosynthetic analysis, leading to efficient syntheses of sugar-related natural and unnatural products. Regarding C-H amination, the discovery of unprecedented reaction sites in intermolecular amination mediated by dirhodium nitrenes is described. The findings of this research demonstrate the power of site-selective transformation in the synthesis of a particular class of compounds.
    MeSH term(s) Acylation ; Amination ; Hydroxides/chemistry ; Molecular Structure
    Chemical Substances Hydroxides
    Language English
    Publishing date 2021-10-02
    Publishing country Japan
    Document type Journal Article ; Review
    ZDB-ID 213307-6
    ISSN 1347-5223 ; 0009-2363
    ISSN (online) 1347-5223
    ISSN 0009-2363
    DOI 10.1248/cpb.c21-00425
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