Article ; Online: De Novo Assembly and Annotation of the Vaginal Metatranscriptome Associated with Bacterial Vaginosis.
International journal of molecular sciences
2022 Volume 23, Issue 3
Abstract: The vaginal microbiome plays an important role in women's health and disease. Here we reanalyzed 40 vaginal transcriptomes from a previous study of de novo assembly (metaT-Assembly) followed by functional annotation. We identified 286,293 contigs and ... ...
Abstract | The vaginal microbiome plays an important role in women's health and disease. Here we reanalyzed 40 vaginal transcriptomes from a previous study of de novo assembly (metaT-Assembly) followed by functional annotation. We identified 286,293 contigs and further assigned them to 25 phyla, 209 genera, and 339 species. |
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MeSH term(s) | Adult ; Bacteria/classification ; Bacteria/genetics ; Bacteria/isolation & purification ; DNA, Bacterial/genetics ; DNA, Ribosomal/genetics ; Databases, Genetic ; Female ; Gene Expression Profiling/methods ; Gene Expression Regulation, Bacterial ; Humans ; Metagenomics/methods ; Middle Aged ; Phylogeny ; RNA, Ribosomal, 16S/genetics ; Sequence Analysis, DNA ; Sequence Analysis, RNA ; Vagina/microbiology ; Vaginosis, Bacterial/microbiology ; Young Adult |
Chemical Substances | DNA, Bacterial ; DNA, Ribosomal ; RNA, Ribosomal, 16S |
Language | English |
Publishing date | 2022-01-30 |
Publishing country | Switzerland |
Document type | Journal Article |
ZDB-ID | 2019364-6 |
ISSN | 1422-0067 ; 1422-0067 ; 1661-6596 |
ISSN (online) | 1422-0067 |
ISSN | 1422-0067 ; 1661-6596 |
DOI | 10.3390/ijms23031621 |
Database | MEDical Literature Analysis and Retrieval System OnLINE |
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