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Article ; Online: Long-term tracking reveals a dynamic crocodylian social system

Baker, Cameron J. / Frère, Céline H. / Franklin, Craig E. / Campbell, Hamish A. / Irwin, Terri R. / Dwyer, Ross G.

Animal Behaviour. 2023 May, v. 199 p.59-78

2023

Abstract: Animal social systems are inherently dynamic, with individuals moderating how they associate with conspecifics according to spatiotemporal shifts in population demography and resource availability. Understanding such variation is important not only to ... ...

Abstract	Animal social systems are inherently dynamic, with individuals moderating how they associate with conspecifics according to spatiotemporal shifts in population demography and resource availability. Understanding such variation is important not only to further our knowledge of a species' ecology but also to gain insights into the factors influencing the evolution of animal social systems. Using a 10-year acoustic telemetry data set containing the movements and co-occurrences of 166 tagged individuals, we investigated how time of year, individual sex and maturity status affect the social organization and connectivity of a wild population of estuarine crocodiles, Crocodylus porosus. We found that our tagged population of crocodiles displayed social structure, where individuals segregated spatially into distinct communities along 120km of river and estuary. The social organization and structure of these communities were temporally dynamic, with association rates and the connectedness of individuals peaking during the dry season before disintegrating prior to the onset of the wet season. The formation of communities was found to coincide with an increase in the frequency of co-occurrence events between mature and mature–immature dyads prior to the onset of the mating season. Together these findings indicate that estuarine crocodiles have a structured social system, where the proximity to the mating season and an individual's maturity status dictate how they associate with conspecifics.
Keywords	Crocodylus porosus ; acoustics ; animal behavior ; animals ; data collection ; demography ; dry season ; estuaries ; evolution ; rivers ; social structure ; telemetry ; wet season ; acoustic telemetry ; Crocodylusporosus ; estuarine crocodile ; lagged association rate ; sociality ; social network analysis ; spatially explicit null model
Language	English
Dates of publication	2023-05
Size	p. 59-78.
Publishing place	Elsevier Ltd
Document type	Article ; Online
Note	Use and reproduction
ZDB-ID	281-1
ISSN	0003-3472
ISSN	0003-3472
DOI	10.1016/j.anbehav.2023.02.015
Database	NAL-Catalogue (AGRICOLA)

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Article ; Online: Conditional alternative movement tactics in male crocodiles

Barham, Kaitlin E. / Baker, Cameron J. / Franklin, Craig E. / Campbell, Hamish A. / Frére, Celine H. / Irwin, Terri R. / Dwyer, Ross G.

Behav Ecol Sociobiol. 2023 Mar., v. 77, no. 3 p.31-31

2023

Abstract: In species where conflict is costly, individuals adopt alternative movement tactics to minimise the risk of competitive interactions. Dominant males often maintain defined territories, while less competitive males may be forced to adopt alternative ... ...

Abstract	In species where conflict is costly, individuals adopt alternative movement tactics to minimise the risk of competitive interactions. Dominant males often maintain defined territories, while less competitive males may be forced to adopt alternative tactics to maximise fitness and reduce conflict. However, the extent to which males switch tactics according to current social or physiological status is poorly understood. Using implanted acoustic tags and a fixed array of tracking receivers, we investigated how the behaviour of 78 male estuarine crocodiles (Crocodylus porosus) shifted over an 11-year period in relation to ontogeny, body condition, and the extent of physical injuries. We discovered that male crocodiles sorted into three common movement classes, with 51% of males maintaining the same movement class across consecutive years (max = 9 years). Males > 4 m in total length maintained confined territories both within and across years and had the greatest extent of injuries and the highest condition score, indicative of territory holders. In contrast, smaller males sorted into high movement roamer or low movement site-philopatric tactics, where the tactic an individual adopted was less stable between years and did not correlate with condition or external injuries. Our study reveals the socio-biological mechanisms by which estuarine crocodiles coexist within a restricted habitat. SIGNIFICANCE STATEMENT: Identifying individual-level differences in movement helps us predict which individuals are more likely to be involved in human-wildlife interactions. However, studying long-term shifts in movement is challenging, as large datasets of co-occurring individuals tracked in their natural environment over multiple years are required. We tracked a population of 78 male estuarine crocodiles (1030–4687 mm total length) in a shared environment over 11 years and assessed how eight movement traits were linked to body size and physical condition. At the population level, males sorted into different movement tactics according to ontogeny, with large territorial males having better body condition yet a greater incidence of injury. However, 49% of males showed variability across years, suggesting that tactics were conditional relative to environmental variability and a male’s own status. Our study provides insights into the mechanisms and costs of movement tactics in wild crocodile populations.
Keywords	Crocodylus porosus ; acoustics ; body condition ; body size ; crocodiles ; data collection ; estuaries ; habitats ; males ; ontogeny ; physiological state ; risk
Language	English
Dates of publication	2023-03
Size	p. 31.
Publishing place	Springer Berlin Heidelberg
Document type	Article ; Online
ZDB-ID	194510-5
ISSN	1432-0762 ; 0340-5443
ISSN (online)	1432-0762
ISSN	0340-5443
DOI	10.1007/s00265-023-03303-z
Database	NAL-Catalogue (AGRICOLA)

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Article: Habitat size influences community stability

Greig, Hamish S. / McHugh, Peter A. / Thompson, Ross M. / Warburton, Helen J. / McIntosh, Angus R.

Ecology. 2022 Jan., v. 103, no. 1

2022

Abstract: Mechanisms linked to demographic, biogeographic, and food‐web processes thought to underpin community stability could be affected by habitat size, but the effects of habitat size on community stability remain relatively unknown. We investigated whether ... ...

Abstract	Mechanisms linked to demographic, biogeographic, and food‐web processes thought to underpin community stability could be affected by habitat size, but the effects of habitat size on community stability remain relatively unknown. We investigated whether those habitat‐size‐dependent properties influenced community instability and vulnerability to perturbations caused by disturbance. This is particularly important given that human exploitation is contracting ecosystems, and abiotic perturbations are becoming more severe and frequent. We used a perturbation experiment in which 10 streams, spanning three orders of magnitude in habitat size, were subjected to simulated bed movement akin to a major flood disturbance event. We measured the resistance, resilience, and variability of basal resources, and population and community‐level responses across the stream habitat‐size gradient immediately before, and at 0.5, 5, 10, 20, and 40 d post‐disturbance. Resistance to disturbance consistently increased with stream size in all response variables. In contrast, resilience was significantly higher in smaller streams for some response variables. However, this higher resilience of small ecosystems was insufficient to compensate for their lower resistance, and communities of smaller streams were thus more variable over time than those of larger streams. Compensatory dynamics of populations, especially for predators, stabilized some aspects of communities, but these mechanisms were unrelated to habitat size. Together, our results provide compelling evidence for the links between habitat size and community stability, and should motivate ecologists and managers to consider how changes in the size of habitats will alter the vulnerability of ecosystems to perturbations caused by environmental disturbance.
Keywords	food webs ; geographical distribution ; habitats ; humans ; streams
Language	English
Dates of publication	2022-01
Publishing place	John Wiley & Sons, Ltd
Document type	Article
Note	JOURNAL ARTICLE
ZDB-ID	1797-8
ISSN	0012-9658
ISSN	0012-9658
DOI	10.1002/ecy.3545
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Article: Growth enhancements of elevated atmospheric [CO2] are reduced under drought‐like conditions in temperate eucalypts

Bendall, Eli R. / Bedward, Michael / Boer, Matthias / Clarke, Hamish / Collins, Luke / Leigh, Andrea / Bradstock, Ross A.

Functional ecology. 2022 July, v. 36, no. 7

2022

Abstract: Elevated atmospheric [CO₂] (‘eCO₂’) may alter species composition within vegetation types by favouring the growth of some species over others. However, other related changes in climate conditions, such as increased frequency and severity of drought, may ... ...

Abstract	Elevated atmospheric [CO₂] (‘eCO₂’) may alter species composition within vegetation types by favouring the growth of some species over others. However, other related changes in climate conditions, such as increased frequency and severity of drought, may reduce eCO₂ fertilisation effects on plant growth. For many species, it is not known if responses will reflect variability in trait adaptations due to environment. We grew seedlings of nine species of eucalypts indicative of three regional vegetation types (representing a mesic–xeric ecosystem gradient) under two CO₂ concentrations (400 parts per million; 640 ppm, i.e. eCO₂) and two watering regimes (well‐watered; drought‐like conditions). Elevated CO₂ increased biomass accumulation but drought reduced this effect, with mesic species experiencing larger relative reductions. Elevated CO₂ increased the size of storage organs used during resprouting, in the absence of drought. Typical drought responses, such as increased leaf mass per unit area and root mass ratio, were more pronounced in xeric species and were reduced under eCO₂. Seedling growth and resprouting may be enhanced by eCO₂, suggesting continued dominance of resprouting species in disturbance‐prone ecosystems, although severe drought is likely to offset eCO₂ fertilisation. Xeric species may cope with drought more effectively under eCO₂ than mesic species due to resource acquisition and storage traits that are more responsive. Read the free Plain Language Summary for this article on the Journal blog.
Keywords	Eucalyptus ; biomass production ; carbon dioxide ; drought ; ecosystems ; leaf mass ; seedling growth ; species diversity
Language	English
Dates of publication	2022-07
Size	p. 1542-1558.
Publishing place	John Wiley & Sons, Ltd
Document type	Article
Note	JOURNAL ARTICLE
ZDB-ID	2020307-X
ISSN	1365-2435 ; 0269-8463
ISSN (online)	1365-2435
ISSN	0269-8463
DOI	10.1111/1365-2435.14046
Database	NAL-Catalogue (AGRICOLA)

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Article ; Online: Habitat size influences community stability.

Greig, Hamish S / McHugh, Peter A / Thompson, Ross M / Warburton, Helen J / McIntosh, Angus R

Ecology

2021 Volume 103, Issue 1, Page(s) e03545

Abstract: Mechanisms linked to demographic, biogeographic, and food-web processes thought to underpin community stability could be affected by habitat size, but the effects of habitat size on community stability remain relatively unknown. We investigated whether ... ...

Abstract	Mechanisms linked to demographic, biogeographic, and food-web processes thought to underpin community stability could be affected by habitat size, but the effects of habitat size on community stability remain relatively unknown. We investigated whether those habitat-size-dependent properties influenced community instability and vulnerability to perturbations caused by disturbance. This is particularly important given that human exploitation is contracting ecosystems, and abiotic perturbations are becoming more severe and frequent. We used a perturbation experiment in which 10 streams, spanning three orders of magnitude in habitat size, were subjected to simulated bed movement akin to a major flood disturbance event. We measured the resistance, resilience, and variability of basal resources, and population and community-level responses across the stream habitat-size gradient immediately before, and at 0.5, 5, 10, 20, and 40 d post-disturbance. Resistance to disturbance consistently increased with stream size in all response variables. In contrast, resilience was significantly higher in smaller streams for some response variables. However, this higher resilience of small ecosystems was insufficient to compensate for their lower resistance, and communities of smaller streams were thus more variable over time than those of larger streams. Compensatory dynamics of populations, especially for predators, stabilized some aspects of communities, but these mechanisms were unrelated to habitat size. Together, our results provide compelling evidence for the links between habitat size and community stability, and should motivate ecologists and managers to consider how changes in the size of habitats will alter the vulnerability of ecosystems to perturbations caused by environmental disturbance.
MeSH term(s)	Biota ; Ecosystem ; Floods ; Rivers
Language	English
Publishing date	2021-11-10
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
ZDB-ID	2010140-5
ISSN	1939-9170 ; 0012-9658
ISSN (online)	1939-9170
ISSN	0012-9658
DOI	10.1002/ecy.3545
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article ; Online: Assessing the impact of online postal self-sampling for sexually transmitted infections on health inequalities, access to care and clinical outcomes in the UK: protocol for ASSIST, a realist evaluation.

Gibbs, Jo / Howarth, Alison R / Sheringham, Jessica / Jackson, Louise J / Wong, Geoff / Copas, Andrew / Crundwell, David J / Mercer, Catherine H / Mohammed, Hamish / Ross, Jonathan / Sullivan, Ann K / Murray, Elizabeth / Burns, Fiona M

BMJ open

2022 Volume 12, Issue 12, Page(s) e067170

Abstract: Introduction: The past decade has seen a rapid increase in the volume and proportion of testing for sexually transmitted infections that are accessed via online postal self-sampling services in the UK. ASSIST (Assessing the impact of online postal self- ... ...

Abstract	Introduction: The past decade has seen a rapid increase in the volume and proportion of testing for sexually transmitted infections that are accessed via online postal self-sampling services in the UK. ASSIST (Assessing the impact of online postal self-sampling for sexually transmitted infections on health inequalities, access to care and clinical outcomes in the UK) aims to assess the impact of these services on health inequalities, access to care, and clinical and economic outcomes, and to identify the factors that influence the implementation and sustainability of these services. Methods and analysis: ASSIST is a mixed-methods, realist evaluated, national study with an in-depth focus of three case study areas (Birmingham, London and Sheffield). An impact evaluation, economic evaluation and implementation evaluation will be conducted. Findings from these evaluations will be analysed together to develop programme theories that explain the outcomes. Data collection includes quantitative data (using national, clinic based and online datasets); qualitative interviews with service users, healthcare professionals and key stakeholders; contextual observations and documentary analysis. STATA 17 and NVivo will be used to conduct the quantitative and qualitative analysis, respectively. Ethics and dissemination: This study has been approved by South Central - Berkshire Research Ethics Committee (ref: 21/SC/0223). All quantitative data accessed and collected will be anonymous. Participants involved with qualitative interviews will be asked for informed consent, and data collected will be anonymised.Our dissemination strategy has been developed to access and engage key audiences in a timely manner and findings will be disseminated via the study website, social media, in peer-reviewed scientific journals, at research conferences, local meetings and seminars and at a concluding dissemination and networking event for stakeholders.
MeSH term(s)	Humans ; Research Design ; Health Personnel ; Sexually Transmitted Diseases/diagnosis ; Health Services Accessibility ; United Kingdom
Language	English
Publishing date	2022-12-14
Publishing country	England
Document type	Journal Article
ZDB-ID	2599832-8
ISSN	2044-6055 ; 2044-6055
ISSN (online)	2044-6055
ISSN	2044-6055
DOI	10.1136/bmjopen-2022-067170
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Article ; Online: Assessing the impact of online postal self-sampling for sexually transmitted infections on health inequalities, access to care and clinical outcomes in the UK

Jo Gibbs / Hamish Mohammed / Jonathan Ross / Catherine H Mercer / Elizabeth Murray / Geoff Wong / Louise J Jackson / Jessica Sheringham / Fiona M Burns / Ann K Sullivan / Andrew Copas / Alison R Howarth / David J Crundwell

BMJ Open, Vol 12, Iss

protocol for ASSIST, a realist evaluation

2022 Volume 12

Abstract: Introduction The past decade has seen a rapid increase in the volume and proportion of testing for sexually transmitted infections that are accessed via online postal self-sampling services in the UK. ASSIST (Assessing the impact of online postal self- ... ...

Abstract	Introduction The past decade has seen a rapid increase in the volume and proportion of testing for sexually transmitted infections that are accessed via online postal self-sampling services in the UK. ASSIST (Assessing the impact of online postal self-sampling for sexually transmitted infections on health inequalities, access to care and clinical outcomes in the UK) aims to assess the impact of these services on health inequalities, access to care, and clinical and economic outcomes, and to identify the factors that influence the implementation and sustainability of these services.Methods and analysis ASSIST is a mixed-methods, realist evaluated, national study with an in-depth focus of three case study areas (Birmingham, London and Sheffield). An impact evaluation, economic evaluation and implementation evaluation will be conducted. Findings from these evaluations will be analysed together to develop programme theories that explain the outcomes. Data collection includes quantitative data (using national, clinic based and online datasets); qualitative interviews with service users, healthcare professionals and key stakeholders; contextual observations and documentary analysis. STATA 17 and NVivo will be used to conduct the quantitative and qualitative analysis, respectively.Ethics and dissemination This study has been approved by South Central – Berkshire Research Ethics Committee (ref: 21/SC/0223). All quantitative data accessed and collected will be anonymous. Participants involved with qualitative interviews will be asked for informed consent, and data collected will be anonymised.Our dissemination strategy has been developed to access and engage key audiences in a timely manner and findings will be disseminated via the study website, social media, in peer-reviewed scientific journals, at research conferences, local meetings and seminars and at a concluding dissemination and networking event for stakeholders.
Keywords	Medicine ; R
Subject code	306
Language	English
Publishing date	2022-12-01T00:00:00Z
Publisher	BMJ Publishing Group
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article ; Online: Ontogenetic shifts in the nesting behaviour of female crocodiles.

Baker, Cameron J / Franklin, Craig E / Campbell, Hamish A / Irwin, Terri R / Dwyer, Ross G

Oecologia

2019 Volume 189, Issue 4, Page(s) 891–904

Abstract: Body size and age are crucial factors influencing reproductive capacity and success. As females grow, their reproductive investment and success often increase due to improved overall physiological condition and experience gained through successive ... ...

Abstract	Body size and age are crucial factors influencing reproductive capacity and success. As females grow, their reproductive investment and success often increase due to improved overall physiological condition and experience gained through successive reproductive events. While much of this work has been conducted on birds and mammals, surprisingly little is known on how body size affects nesting decisions in other long-lived vertebrates. We monitored the movements and nesting behaviour of 57 wild female estuarine crocodiles Crocodylus porosus over a 10-year period (and across consecutive nesting seasons) using externally mounted satellite tags, implanted acoustic transmitters and a network of submerged acoustic receivers. Applying Hidden Markov models to the telemetry-derived location data revealed that female nesting behaviours could be split into three distinct states: (i) ranging movements within home ranges and at nesting sites; (ii) migrations to and from nesting sites; (iii) and nesting/nest guarding. We found that during migration events, larger females migrated further and remained away from dry season territories for longer periods than smaller individuals. Furthermore, not only were migratory movements stimulated by increases in rainfall, larger females migrated to nest sites at lower rainfall thresholds than smaller females. We provide some of the first evidence of body size influencing nesting decisions in an ectothermic vertebrate, with shifts likely resulting from an increased willingness to invest in nest protection among larger and more experienced females.
MeSH term(s)	Alligators and Crocodiles ; Animals ; Female ; Homing Behavior ; Nesting Behavior ; Reproduction ; Seasons
Language	English
Publishing date	2019-03-13
Publishing country	Germany
Document type	Journal Article
ZDB-ID	123369-5
ISSN	1432-1939 ; 0029-8549
ISSN (online)	1432-1939
ISSN	0029-8549
DOI	10.1007/s00442-019-04382-4
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Article ; Online: Impact of additional genetic abnormalities at diagnosis of chronic myeloid leukemia for first-line imatinib-treated patients receiving proactive treatment intervention.

Shanmuganathan, Naranie / Wadham, Carol / Shahrin, NurHezrin / Feng, Jinghua / Thomson, Daniel / Wang, Paul / Saunders, Verity / Kok, Chung Hoow / King, Rob M / Kenyon, Rosalie R / Lin, Ming / Pagani, Ilaria S / Ross, David M / Yong, Agnes S M / Grigg, Andrew P / Mills, Anthony K / Schwarer, Anthony P / Braley, Jodi / Altamura, Haley /

Yeung, David T / Scott, Hamish S / Schreiber, Andreas W / Hughes, Timothy P / Branford, Susan

Haematologica

2023 Volume 108, Issue 9, Page(s) 2380–2395

Abstract: The BCR::ABL1 gene fusion initiates chronic myeloid leukemia (CML); however, evidence has accumulated from studies of highly selected cohorts that variants in other cancer-related genes are associated with treatment failure. Nevertheless, the true ... ...

Abstract	The BCR::ABL1 gene fusion initiates chronic myeloid leukemia (CML); however, evidence has accumulated from studies of highly selected cohorts that variants in other cancer-related genes are associated with treatment failure. Nevertheless, the true incidence and impact of additional genetic abnormalities (AGA) at diagnosis of chronic phase (CP)-CML is unknown. We sought to determine whether AGA at diagnosis in a consecutive imatinib-treated cohort of 210 patients enrolled in the TIDEL-II trial influenced outcome despite a highly proactive treatment intervention strategy. Survival outcomes including overall survival, progression-free survival, failure-free survival, and BCR::ABL1 kinase domain mutation acquisition were evaluated. Molecular outcomes were measured at a central laboratory and included major molecular response (MMR, BCR::ABL1 ≤0.1%IS), MR4 (BCR::ABL1 ≤0.01%IS), and MR4.5 (BCR::ABL1 ≤0.0032%IS). AGA included variants in known cancer genes and novel rearrangements involving the formation of the Philadelphia chromosome. Clinical outcomes and molecular response were assessed based on the patient's genetic profile and other baseline factors. AGA were identified in 31% of patients. Potentially pathogenic variants in cancer-related genes were detected in 16% of patients at diagnosis (including gene fusions and deletions) and structural rearrangements involving the Philadelphia chromosome (Ph-associated rearrangements) were detected in 18%. Multivariable analysis demonstrated that the combined genetic abnormalities plus the EUTOS long-term survival clinical risk score were independent predictors of lower molecular response rates and higher treatment failure. Despite a highly proactive treatment intervention strategy, first-line imatinib-treated patients with AGA had poorer response rates. These data provide evidence for the incorporation of genomically-based risk assessment for CML.
MeSH term(s)	Humans ; Imatinib Mesylate/therapeutic use ; Antineoplastic Agents/therapeutic use ; Philadelphia Chromosome ; Fusion Proteins, bcr-abl/genetics ; Fusion Proteins, bcr-abl/metabolism ; Leukemia, Myelogenous, Chronic, BCR-ABL Positive/diagnosis ; Leukemia, Myelogenous, Chronic, BCR-ABL Positive/drug therapy ; Leukemia, Myelogenous, Chronic, BCR-ABL Positive/genetics ; Leukemia, Myeloid, Chronic-Phase/drug therapy ; Protein Kinase Inhibitors/therapeutic use
Chemical Substances	Imatinib Mesylate (8A1O1M485B) ; Antineoplastic Agents ; Fusion Proteins, bcr-abl (EC 2.7.10.2) ; Protein Kinase Inhibitors
Language	English
Publishing date	2023-09-01
Publishing country	Italy
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	2333-4
ISSN	1592-8721 ; 0017-6567 ; 0390-6078
ISSN (online)	1592-8721
ISSN	0017-6567 ; 0390-6078
DOI	10.3324/haematol.2022.282184
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Article ; Online: Correction to: Osteoarthritis Preoperative Package for care of Orthotics, Rehabilitation, Topical and oral agent Usage and Nutrition to Improve ouTcomes at a Year (OPPORTUNITY); a feasibility study protocol for a randomised controlled trial.

Simpson, A Hamish R W / Howie, Colin R / Kinsella, Elaine / Hamilton, David F / Conaghan, Philip G / Hankey, Catherine / Simpson, Sharon Anne / Bell-Higgs, Anna / Craig, Peter / Clement, Nicholas D / Keerie, Catriona / Kingsbury, Sarah R / Leeds, Anthony R / Ross, Hazel M / Pandit, Hemant G / Tuck, Chris / Norrie, John

Trials

2020 Volume 21, Issue 1, Page(s) 345

Abstract: ... mistakenly removed from the authorship list: Colin R. Howie and Nicholas D. Clement. ...

Abstract	After publication of our article [1] we have been notified that two of the author names have been mistakenly removed from the authorship list: Colin R. Howie and Nicholas D. Clement.
Language	English
Publishing date	2020-04-20
Publishing country	England
Document type	Journal Article ; Published Erratum
ZDB-ID	2040523-6
ISSN	1745-6215 ; 1468-6694 ; 1468-6708
ISSN (online)	1745-6215 ; 1468-6694
ISSN	1468-6708
DOI	10.1186/s13063-020-04292-4
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