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  1. Article ; Online: Plasma proteome of Long-COVID patients indicates HIF-mediated vasculo-proliferative disease with impact on brain and heart function.

    Iosef, Cristiana / Knauer, Michael J / Nicholson, Michael / Van Nynatten, Logan R / Cepinskas, Gediminas / Draghici, Sorin / Han, Victor K M / Fraser, Douglas D

    Journal of translational medicine

    2023  Volume 21, Issue 1, Page(s) 377

    Abstract: Aims: Long-COVID occurs after SARS-CoV-2 infection and results in diverse, prolonged symptoms. The present study aimed to unveil potential mechanisms, and to inform prognosis and treatment.: Methods: Plasma proteome from Long-COVID outpatients was ... ...

    Abstract Aims: Long-COVID occurs after SARS-CoV-2 infection and results in diverse, prolonged symptoms. The present study aimed to unveil potential mechanisms, and to inform prognosis and treatment.
    Methods: Plasma proteome from Long-COVID outpatients was analyzed in comparison to matched acutely ill COVID-19 (mild and severe) inpatients and healthy control subjects. The expression of 3072 protein biomarkers was determined with proximity extension assays and then deconvoluted with multiple bioinformatics tools into both cell types and signaling mechanisms, as well as organ specificity.
    Results: Compared to age- and sex-matched acutely ill COVID-19 inpatients and healthy control subjects, Long-COVID outpatients showed natural killer cell redistribution with a dominant resting phenotype, as opposed to active, and neutrophils that formed extracellular traps. This potential resetting of cell phenotypes was reflected in prospective vascular events mediated by both angiopoietin-1 (ANGPT1) and vascular-endothelial growth factor-A (VEGFA). Several markers (ANGPT1, VEGFA, CCR7, CD56, citrullinated histone 3, elastase) were validated by serological methods in additional patient cohorts. Signaling of transforming growth factor-β1 with probable connections to elevated EP/p300 suggested vascular inflammation and tumor necrosis factor-α driven pathways. In addition, a vascular proliferative state associated with hypoxia inducible factor 1 pathway suggested progression from acute COVID-19 to Long-COVID. The vasculo-proliferative process predicted in Long-COVID might contribute to changes in the organ-specific proteome reflective of neurologic and cardiometabolic dysfunction.
    Conclusions: Taken together, our findings point to a vasculo-proliferative process in Long-COVID that is likely initiated either prior hypoxia (localized or systemic) and/or stimulatory factors (i.e., cytokines, chemokines, growth factors, angiotensin, etc). Analyses of the plasma proteome, used as a surrogate for cellular signaling, unveiled potential organ-specific prognostic biomarkers and therapeutic targets.
    MeSH term(s) Humans ; COVID-19 ; Proteome ; SARS-CoV-2 ; Post-Acute COVID-19 Syndrome ; Prospective Studies ; Brain ; Biomarkers
    Chemical Substances Proteome ; Biomarkers
    Language English
    Publishing date 2023-06-10
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2118570-0
    ISSN 1479-5876 ; 1479-5876
    ISSN (online) 1479-5876
    ISSN 1479-5876
    DOI 10.1186/s12967-023-04149-9
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Organ and cell-specific biomarkers of Long-COVID identified with targeted proteomics and machine learning.

    Patel, Maitray A / Knauer, Michael J / Nicholson, Michael / Daley, Mark / Van Nynatten, Logan R / Cepinskas, Gediminas / Fraser, Douglas D

    Molecular medicine (Cambridge, Mass.)

    2023  Volume 29, Issue 1, Page(s) 26

    Abstract: Background: Survivors of acute COVID-19 often suffer prolonged, diffuse symptoms post-infection, referred to as "Long-COVID". A lack of Long-COVID biomarkers and pathophysiological mechanisms limits effective diagnosis, treatment and disease ... ...

    Abstract Background: Survivors of acute COVID-19 often suffer prolonged, diffuse symptoms post-infection, referred to as "Long-COVID". A lack of Long-COVID biomarkers and pathophysiological mechanisms limits effective diagnosis, treatment and disease surveillance. We performed targeted proteomics and machine learning analyses to identify novel blood biomarkers of Long-COVID.
    Methods: A case-control study comparing the expression of 2925 unique blood proteins in Long-COVID outpatients versus COVID-19 inpatients and healthy control subjects. Targeted proteomics was accomplished with proximity extension assays, and machine learning was used to identify the most important proteins for identifying Long-COVID patients. Organ system and cell type expression patterns were identified with Natural Language Processing (NLP) of the UniProt Knowledgebase.
    Results: Machine learning analysis identified 119 relevant proteins for differentiating Long-COVID outpatients (Bonferonni corrected P < 0.01). Protein combinations were narrowed down to two optimal models, with nine and five proteins each, and with both having excellent sensitivity and specificity for Long-COVID status (AUC = 1.00, F1 = 1.00). NLP expression analysis highlighted the diffuse organ system involvement in Long-COVID, as well as the involved cell types, including leukocytes and platelets, as key components associated with Long-COVID.
    Conclusions: Proteomic analysis of plasma from Long-COVID patients identified 119 highly relevant proteins and two optimal models with nine and five proteins, respectively. The identified proteins reflected widespread organ and cell type expression. Optimal protein models, as well as individual proteins, hold the potential for accurate diagnosis of Long-COVID and targeted therapeutics.
    MeSH term(s) Humans ; COVID-19 ; Proteomics ; Case-Control Studies ; Machine Learning ; Post-Acute COVID-19 Syndrome ; Biomarkers
    Chemical Substances Biomarkers
    Language English
    Publishing date 2023-02-21
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 1283676-x
    ISSN 1528-3658 ; 1076-1551
    ISSN (online) 1528-3658
    ISSN 1076-1551
    DOI 10.1186/s10020-023-00610-z
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  3. Article: Metal Nano Networks by Potential-Controlled In Situ Assembling of Gold/Silver Nanoparticles.

    Köhler, J Michael / Kluitmann, Jonas / Knauer, Andrea

    ChemistryOpen

    2019  Volume 8, Issue 12, Page(s) 1364

    Abstract: Invited for this month's cover picture is the group of Professors Michael Köhler at the Technische ...

    Abstract Invited for this month's cover picture is the group of Professors Michael Köhler at the Technische Universität Ilmenau. The cover picture shows an overlay of an image of a metal nanoparticle network (blue) and sets of non-spherical metal nanoparticles of different shapes (yellow). The particles can be used in plasmonic labelling, nanoparticle-based SERS-sensing and heterogeneous catalysis. Read the full text of their Full Paper at https://doi.org/10.1002/open.201900231.
    Language English
    Publishing date 2019-11-22
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 2655605-4
    ISSN 2191-1363
    ISSN 2191-1363
    DOI 10.1002/open.201900330
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Metal Nano Networks by Potential-Controlled In Situ Assembling of Gold/Silver Nanoparticles.

    Köhler, J Michael / Kluitmann, Jonas / Knauer, Andrea

    ChemistryOpen

    2019  Volume 8, Issue 12, Page(s) 1369–1374

    Abstract: Non-spherical Au/Ag nanoparticles can be generated by chemical reduction of silver ions in the presence of preformed gold nanoparticles. The process of particle formation can be controlled by concentrations of ligands and reducing agent. The formation of ...

    Abstract Non-spherical Au/Ag nanoparticles can be generated by chemical reduction of silver ions in the presence of preformed gold nanoparticles. The process of particle formation can be controlled by concentrations of ligands and reducing agent. The formation of ellipsoidal, nanorod- and peanut-shaped nanoparticles as well as of more complex fractal nanoassemblies can be explained by changes in particle surface state, electrochemical potential formation and particle-internal self-polarization effects. It is possible to create highly fractal nanoassemblies with sizes between the mid-nanometer and the lower micrometer range. The assemblies are marked by high optical absorption and complex nano-networks of very high surface-to-volume ratios and a granular base structure.
    Language English
    Publishing date 2019-10-10
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 2655605-4
    ISSN 2191-1363
    ISSN 2191-1363
    DOI 10.1002/open.201900231
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Rapid COVID-19 testing: Speed, quality and cost. Can you have all three?

    Beach, Lori A / Fung, Angela W S / Knauer, Michael J / Shaw, Julie L V / Taher, Jennifer

    Clinical biochemistry

    2021  Volume 95, Page(s) 13–14

    Abstract: KEY MESSAGES. ...

    Abstract KEY MESSAGES.
    MeSH term(s) COVID-19/diagnosis ; COVID-19/economics ; COVID-19/genetics ; COVID-19 Testing/economics ; COVID-19 Testing/methods ; COVID-19 Testing/standards ; Cost-Benefit Analysis/methods ; Cost-Benefit Analysis/standards ; Humans ; Point-of-Care Testing/economics ; Point-of-Care Testing/standards ; Qualitative Research ; SARS-CoV-2/genetics ; SARS-CoV-2/isolation & purification ; Time Factors
    Language English
    Publishing date 2021-05-26
    Publishing country United States
    Document type Editorial
    ZDB-ID 390372-2
    ISSN 1873-2933 ; 0009-9120
    ISSN (online) 1873-2933
    ISSN 0009-9120
    DOI 10.1016/j.clinbiochem.2021.05.009
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  6. Article ; Online: Interim analysis of the clinical performance of five SARS-Cov-2 serology assays.

    Knauer, Michael J / Hedley, Benjamin D / Bhayana, Vipin / Payne, Michael / Chin-Yee, Ian / Delport, Johan

    Clinical biochemistry

    2020  Volume 86, Page(s) 28–30

    MeSH term(s) Antibodies, Neutralizing/blood ; Antibodies, Viral/blood ; Antibody Specificity ; COVID-19/blood ; COVID-19 Serological Testing ; Humans ; SARS-CoV-2
    Chemical Substances Antibodies, Neutralizing ; Antibodies, Viral
    Keywords covid19
    Language English
    Publishing date 2020-09-06
    Publishing country United States
    Document type Letter
    ZDB-ID 390372-2
    ISSN 1873-2933 ; 0009-9120
    ISSN (online) 1873-2933
    ISSN 0009-9120
    DOI 10.1016/j.clinbiochem.2020.09.002
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  7. Article ; Online: Explanation of the size dependent in-plane optical resonance of triangular silver nanoprisms.

    Knauer, Andrea / Koehler, J Michael

    Physical chemistry chemical physics : PCCP

    2016  Volume 18, Issue 23, Page(s) 15943–15949

    Abstract: Triangular silver nanoprisms with thicknesses of 3-5 nm and adjustable edge lengths - which can lead to nanoparticles with aspect ratios up to 1 : 50 - are quasi-two-dimensional nanoparticles. Due to high ensemble homogeneities, which are achieved by the ...

    Abstract Triangular silver nanoprisms with thicknesses of 3-5 nm and adjustable edge lengths - which can lead to nanoparticles with aspect ratios up to 1 : 50 - are quasi-two-dimensional nanoparticles. Due to high ensemble homogeneities, which are achieved by the application of a microfluid segment based preparation method, the optical properties of the silver nanoprisms can be studied directly in colloidal solution. Investigations of the shift of the longitudinal main absorption peak with varying edge length lead to a semi-empiric model in which inelastic one-photon-one-electron processes are used to explain the found absorption behavior instead of the conventional interpretation of a collective oscillation of the conduction band electrons. Independently of the inserted seed particle volumes or amounts of silver ions, all measurement series follow a linear interrelation between the spectral position of the longitudinal absorption peak and the determined edge length of the nanoprisms, which leads to the derivation of a length constant b0, which in turn can be described within the framework of the model - next to a geometry factor - exclusively by natural constants. The proposed model describes the behavior of quasi-two-dimensional noble metal nanoparticles by a dualism between the assumption of "metallic molecules" and materials with "blurred bandgaps".
    Language English
    Publishing date 2016-06-21
    Publishing country England
    Document type Journal Article
    ZDB-ID 1476244-4
    ISSN 1463-9084 ; 1463-9076
    ISSN (online) 1463-9084
    ISSN 1463-9076
    DOI 10.1039/c6cp00953k
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  8. Article ; Online: Serologic Response to Vaccine for COVID-19 in Patients with Hematologic Malignancy: A Prospective Cohort Study.

    Hillyer, Alexandra / Quint, Anthony / Ghassemian, Artin / Joh-Carnella, Nicolette / Knauer, Michael J / Dawd, Danny / Lazo-Langner, Alejandro / Mangel, Joy / Lam, Selay / Abdoh, Husam / Xenocostas, Anargyros / Deotare, Uday / Saini, Lalit / Foster, Cheryl / Louzada, Martha / Ho, Jenny / Chin-Yee, Ian / Phua, Chai W

    Clinical lymphoma, myeloma & leukemia

    2024  Volume 24, Issue 5, Page(s) 305–315

    Abstract: Background: Patients with hematological cancers have increased COVID-19 morbidity and mortality, and these patients show attenuated vaccine responses. This study aimed to characterize the longitudinal humoral immune responses to COVID-19 vaccination in ... ...

    Abstract Background: Patients with hematological cancers have increased COVID-19 morbidity and mortality, and these patients show attenuated vaccine responses. This study aimed to characterize the longitudinal humoral immune responses to COVID-19 vaccination in patients with hematological malignancies.
    Patients and methods: We conducted a prospective cohort study, collecting samples from March 2021 to July 2022, from patients seen at a cancer treatment center in London, Ontario, Canada, who met the following eligibility criteria: age ≥18 years, diagnosed with a hematological malignancy, recipient of a COVID-19 vaccine during the study period, and able to provide informed consent.
    Results: Median anti-S titers (MST) were 0.0, 64.0, and 680.5 U/mL following first (V1), second (V2), and third (V3) vaccine doses, respectively. Patients with lymphoid malignancies' response to vaccination was attenuated compared to myeloid malignancy patients after V2 and V3 (P < .001, P < .01). Active treatment was associated with lower antibody titers (MST 10) compared to treatment 12-24 months (MST 465, P = .04367) and >24 months (MST 1660.5, P = .0025) prior to vaccination. V3 significantly increased antibody titers compared to V2 for patients less than 3 months from treatment. Increasing age was associated with smaller antibody response following V2 (P < .05), but not following V3. Patients receiving anti-CD20 therapy did not demonstrate increased antibody titer levels after V3 (V2 MST 0, V3 MST 0; P > .05).
    Conclusion: We report an attenuated serologic response to COVID-19 vaccination in our study population of patients with hematological malignancy. The immune response to vaccination was affected by patient age, diagnosis, treatment, and timing of treatment exposure.
    MeSH term(s) Humans ; Hematologic Neoplasms/immunology ; Hematologic Neoplasms/therapy ; Hematologic Neoplasms/complications ; Male ; Female ; Prospective Studies ; Middle Aged ; COVID-19/prevention & control ; COVID-19/immunology ; COVID-19/complications ; Aged ; COVID-19 Vaccines/immunology ; COVID-19 Vaccines/therapeutic use ; SARS-CoV-2/immunology ; Adult ; Antibodies, Viral/immunology ; Antibodies, Viral/blood ; Vaccination ; Aged, 80 and over ; Immunity, Humoral
    Chemical Substances COVID-19 Vaccines ; Antibodies, Viral
    Language English
    Publishing date 2024-01-18
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2540992-X
    ISSN 2152-2669 ; 2152-2650
    ISSN (online) 2152-2669
    ISSN 2152-2650
    DOI 10.1016/j.clml.2024.01.004
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  9. Article ; Online: Dried blood spots for therapeutic drug monitoring of tacrolimus and sirolimus in pediatric patients.

    Urquhart, Bradley L / Knauer, Michael J

    Pediatric transplantation

    2015  Volume 19, Issue 1, Page(s) 3–4

    MeSH term(s) Dried Blood Spot Testing ; Drug Monitoring/methods ; Female ; Humans ; Immunosuppressive Agents/therapeutic use ; Male ; Sirolimus/blood ; Tacrolimus/blood ; Telemedicine
    Chemical Substances Immunosuppressive Agents ; Sirolimus (W36ZG6FT64) ; Tacrolimus (WM0HAQ4WNM)
    Language English
    Publishing date 2015-02
    Publishing country Denmark
    Document type Comment ; Editorial
    ZDB-ID 1390284-2
    ISSN 1399-3046 ; 1397-3142
    ISSN (online) 1399-3046
    ISSN 1397-3142
    DOI 10.1111/petr.12394
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  10. Article ; Online: Stress-induced brain responses are associated with BMI in women.

    Kühnel, Anne / Hagenberg, Jonas / Knauer-Arloth, Janine / Ködel, Maik / Czisch, Michael / Sämann, Philipp G / Binder, Elisabeth B / Kroemer, Nils B

    Communications biology

    2023  Volume 6, Issue 1, Page(s) 1031

    Abstract: Overweight and obesity are associated with altered stress reactivity and increased inflammation. However, it is not known whether stress-induced changes in brain function scale with BMI and if such associations are driven by peripheral cytokines. Here, ... ...

    Abstract Overweight and obesity are associated with altered stress reactivity and increased inflammation. However, it is not known whether stress-induced changes in brain function scale with BMI and if such associations are driven by peripheral cytokines. Here, we investigate multimodal stress responses in a large transdiagnostic sample using predictive modeling based on spatio-temporal profiles of stress-induced changes in activation and functional connectivity. BMI is associated with increased brain responses as well as greater negative affect after stress and individual response profiles are associated with BMI in females (p
    MeSH term(s) Male ; Humans ; Female ; Body Mass Index ; Obesity ; Brain/diagnostic imaging ; Inflammation ; Cytokines
    Chemical Substances Cytokines
    Language English
    Publishing date 2023-10-11
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ISSN 2399-3642
    ISSN (online) 2399-3642
    DOI 10.1038/s42003-023-05396-8
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