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  1. Book ; Thesis: Einfluß von HIV-1 und CMV auf die In-vitro-Hämatopoese frischer und kultivierter Knochenmarkzellen sowie Analyse der LTBMC-Zellzusammensetzung mit Hilfe der Durchflußzytometrie

    Baumgarte, Sigrid

    1996  

    Author's details vorgelegt von Sigrid Baumgarte
    Language German
    Size 158 S. : Ill., graph. Darst.
    Document type Book ; Thesis
    Thesis / German Habilitation thesis Hamburg, Univ., Diss., 1996
    HBZ-ID HT008951611
    Database Catalogue ZB MED Medicine, Health

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  2. Article ; Online: SARS-CoV-2 Aerosol Transmission Indoors: A Closer Look at Viral Load, Infectivity, the Effectiveness of Preventive Measures and a Simple Approach for Practical Recommendations.

    Kriegel, Martin / Hartmann, Anne / Buchholz, Udo / Seifried, Janna / Baumgarte, Sigrid / Gastmeier, Petra

    International journal of environmental research and public health

    2021  Volume 19, Issue 1

    Abstract: There is uncertainty about the viral loads of infectious individuals required to transmit COVID-19 via aerosol. In addition, there is a lack of both quantification of the influencing parameters on airborne transmission and simple-to-use models for ... ...

    Abstract There is uncertainty about the viral loads of infectious individuals required to transmit COVID-19 via aerosol. In addition, there is a lack of both quantification of the influencing parameters on airborne transmission and simple-to-use models for assessing the risk of infection in practice, which furthermore quantify the influence of non-medical preventive measures. In this study, a dose-response model was adopted to analyze 25 documented outbreaks at infection rates of 4-100%. We show that infection was only possible if the viral load was higher than 10
    MeSH term(s) Aerosols ; COVID-19 ; Humans ; Masks ; SARS-CoV-2 ; Viral Load
    Chemical Substances Aerosols
    Language English
    Publishing date 2021-12-25
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2175195-X
    ISSN 1660-4601 ; 1661-7827
    ISSN (online) 1660-4601
    ISSN 1661-7827
    DOI 10.3390/ijerph19010220
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Investigation of a Limited but Explosive COVID-19 Outbreak in a German Secondary School

    Baumgarte, Sigrid / Hartkopf, Felix / Hölzer, Martin / von Kleist, Max / Neitz, Sabine / Kriegel, Martin / Bollongino, Kirsten

    Viruses. 2022 Jan. 04, v. 14, no. 1

    2022  

    Abstract: The role of schools as a source of infection and driver in the coronavirus-pandemic has been controversial and is still not completely clarified. To prevent harm and disadvantages for children and adolescents, but also adults, detailed data on school ... ...

    Abstract The role of schools as a source of infection and driver in the coronavirus-pandemic has been controversial and is still not completely clarified. To prevent harm and disadvantages for children and adolescents, but also adults, detailed data on school outbreaks is needed, especially when talking about open schools employing evidence-based safety concepts. Here, we investigated the first significant COVID-19 school outbreak in Hamburg, Germany, after the re-opening of schools in 2020. Using clinical, laboratory, and contact data and spatial measures for epidemiological and environmental studies combined with whole-genome sequencing (WGS) analysis, we examined the causes and the course of the secondary school outbreak. The potential index case was identified by epidemiological tracking and the lessons in classrooms with presumably high virus spreading rates and further infection chains in the setting. Sequence analysis of samples detected one sample of a different virus lineage and 25 virus genomes with almost identical sequences, of which 21 showed 100% similarity. Most infections occurred in connection with two lesson units of the primary case. Likely, 31 students (12–14 years old), two staff members, and three family members were infected in the school or the typical household. Sequence analysis revealed an outbreak cluster with a single source that was epidemiologically identified as a member of the educational staff. In lesson units, two superspreading events of varying degrees with airborne transmission took place. These were influenced by several parameters including the exposure times, the use of respiratory masks while speaking and spatial or structural conditions at that time.
    Keywords COVID-19 infection ; airborne transmission ; genome ; secondary education ; sequence analysis ; viruses ; Germany
    Language English
    Dates of publication 2022-0104
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article
    ZDB-ID 2516098-9
    ISSN 1999-4915
    ISSN 1999-4915
    DOI 10.3390/v14010087
    Database NAL-Catalogue (AGRICOLA)

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  4. Article ; Online: SARS-CoV-2 Aerosol Transmission Indoors

    Martin Kriegel / Anne Hartmann / Udo Buchholz / Janna Seifried / Sigrid Baumgarte / Petra Gastmeier

    International Journal of Environmental Research and Public Health, Vol 19, Iss 220, p

    A Closer Look at Viral Load, Infectivity, the Effectiveness of Preventive Measures and a Simple Approach for Practical Recommendations

    2022  Volume 220

    Abstract: There is uncertainty about the viral loads of infectious individuals required to transmit COVID-19 via aerosol. In addition, there is a lack of both quantification of the influencing parameters on airborne transmission and simple-to-use models for ... ...

    Abstract There is uncertainty about the viral loads of infectious individuals required to transmit COVID-19 via aerosol. In addition, there is a lack of both quantification of the influencing parameters on airborne transmission and simple-to-use models for assessing the risk of infection in practice, which furthermore quantify the influence of non-medical preventive measures. In this study, a dose–response model was adopted to analyze 25 documented outbreaks at infection rates of 4–100%. We show that infection was only possible if the viral load was higher than 10 8 viral copies/mL. Based on mathematical simplifications of our approach to predict the probable situational attack rate (PARs) of a group of persons in a room, and valid assumptions, we provide simplified equations to calculate, among others, the maximum possible number of persons and the person-related virus-free air supply flow necessary to keep the number of newly infected persons to less than one. A comparison of different preventive measures revealed that testing contributes the most to the joint protective effect, besides wearing masks and increasing ventilation. In addition, we conclude that absolute volume flow rate or person-related volume flow rate are more intuitive parameters for evaluating ventilation for infection prevention than air exchange rate.
    Keywords airborne transmission ; infection prevention ; risk assessment model ; simplified approaches ; SARS-CoV-2 ; Medicine ; R
    Subject code 690
    Language English
    Publishing date 2022-12-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  5. Article ; Online: Investigation of a Limited but Explosive COVID-19 Outbreak in a German Secondary School.

    Baumgarte, Sigrid / Hartkopf, Felix / Hölzer, Martin / von Kleist, Max / Neitz, Sabine / Kriegel, Martin / Bollongino, Kirsten

    Viruses

    2022  Volume 14, Issue 1

    Abstract: The role of schools as a source of infection and driver in the coronavirus-pandemic has been controversial and is still not completely clarified. To prevent harm and disadvantages for children and adolescents, but also adults, detailed data on school ... ...

    Abstract The role of schools as a source of infection and driver in the coronavirus-pandemic has been controversial and is still not completely clarified. To prevent harm and disadvantages for children and adolescents, but also adults, detailed data on school outbreaks is needed, especially when talking about open schools employing evidence-based safety concepts. Here, we investigated the first significant COVID-19 school outbreak in Hamburg, Germany, after the re-opening of schools in 2020. Using clinical, laboratory, and contact data and spatial measures for epidemiological and environmental studies combined with whole-genome sequencing (WGS) analysis, we examined the causes and the course of the secondary school outbreak. The potential index case was identified by epidemiological tracking and the lessons in classrooms with presumably high virus spreading rates and further infection chains in the setting. Sequence analysis of samples detected one sample of a different virus lineage and 25 virus genomes with almost identical sequences, of which 21 showed 100% similarity. Most infections occurred in connection with two lesson units of the primary case. Likely, 31 students (12-14 years old), two staff members, and three family members were infected in the school or the typical household. Sequence analysis revealed an outbreak cluster with a single source that was epidemiologically identified as a member of the educational staff. In lesson units, two superspreading events of varying degrees with airborne transmission took place. These were influenced by several parameters including the exposure times, the use of respiratory masks while speaking and spatial or structural conditions at that time.
    MeSH term(s) COVID-19/diagnosis ; COVID-19/epidemiology ; COVID-19/prevention & control ; COVID-19/transmission ; Contact Tracing ; Disease Outbreaks/prevention & control ; Educational Personnel ; Family ; Female ; Genome, Viral/genetics ; Germany/epidemiology ; Humans ; Male ; Phylogeny ; Quarantine ; Risk Factors ; SARS-CoV-2/classification ; SARS-CoV-2/genetics ; SARS-CoV-2/isolation & purification ; Schools ; Students
    Language English
    Publishing date 2022-01-04
    Publishing country Switzerland
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2516098-9
    ISSN 1999-4915 ; 1999-4915
    ISSN (online) 1999-4915
    ISSN 1999-4915
    DOI 10.3390/v14010087
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: SARS-CoV-2 Aerosol Transmission Indoors: A Closer Look at Viral Load, Infectivity, the Effectiveness of Preventive Measures and a Simple Approach for Practical Recommendations

    Kriegel, Martin / Hartmann, Anne / Buchholz, Udo / Seifried, Janna / Baumgarte, Sigrid / Gastmeier, Petra

    medRxiv

    Abstract: Currently, airborne transmission is seen as the most important transmission path for SARS-CoV-2. In this investigation, a classic dose-response model is used on the one hand to find out retrospectively the probable viral load of the infectious source ... ...

    Abstract Currently, airborne transmission is seen as the most important transmission path for SARS-CoV-2. In this investigation, a classic dose-response model is used on the one hand to find out retrospectively the probable viral load of the infectious source patient at the time of transmission in 25 documented outbreaks. We showed that an infection due to airborne transmission at a distance from the infectious person was probably only possible in the 25 outbreaks examined, with attack rates of 4-100%, if the viral load had been higher than 1E+08 viral copies/ml. This demonstrates that the viral load estimated from the swab might overestimate a person9s infectivity via aerosol, because a person is generally considered infectious, independent of the transmission way, when the viral load from the swab is 1E+06 viral copies/ml. On the other hand, a possible approach is presented to predict the probable situational Attack Rate (PARs) of a group of persons in a room through aerosol particles emitted by an infectious source patient. Four main categories of influence on the risk of infection are formed: First the emitted viruses, depending on the viral load and the amount of respiratory particles, and necessary number of reproducible viruses for infection, second the room-specific data and duration of stay of the group of people, third the activity of the exposed persons, and fourth the effect of personal protection (e.g. wearing masks from infectious and/or susceptible person). Furthermore, a simplified method is presented to calculate either the maximum possible number of persons in a room, so that probably a maximum of one person becomes infected when an infectious person is in the room, or the PARs,simple for a given number of persons, ventilation rate and time of occupancy. We additionally show, taking into account organizational preventive measures, which person-related virus-free supply air flow rates are necessary to keep the number of newly infected persons to less than 1. The simple approach makes it easy to derive preventive organizational and ventilation measures. Our results show that the volume flow rate or a person-related flow rate is a much more effective parameter to evaluate ventilation for infection prevention than the air change rate. We suggest to monitor the CO2 concentration as an easy to implement and valid measurement system for indoor spaces. Finally, we show that of the three measures, besides of wearing masks and increasing ventilation, testing contributes the most to the joint protective effect. This corresponds to the classic approach to implement protection concepts: preventing the source from entering the room and emitting viruses at all. In summary, a layered approach of different measures is recommended to mutually compensate for possible failures of any one measure (e.g. incorrect execution of tests, incorrect fit of masks or irregular window opening), to increase the degree of protection and thus reduce the risk of transmission of SARS-CoV-2.
    Keywords covid19
    Language English
    Publishing date 2021-11-04
    Publisher Cold Spring Harbor Laboratory Press
    Document type Article ; Online
    DOI 10.1101/2021.11.04.21265910
    Database COVID19

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  7. Book ; Thesis: Einfluß von HIV-1 und CMV auf die in vitro Hämatopoese frischer und kultivierter Knochenmarkzellen sowie Analyse der LTBMC-Zellzusammensetzung mit Hilfe der Durchflußzytometrie

    Baumgarte, Sigrid

    1996  

    Author's details vorgelegt von Sigrid Baumgarte
    Language German
    Size 158 S, graph. Darst
    Document type Book ; Thesis
    Thesis / German Habilitation thesis Univ., FB Medizin, Diss.--Hamburg, 1996
    Database Former special subject collection: coastal and deep sea fishing

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  8. Article ; Online: Comparative analysis of rabies virus reverse transcription-PCR and virus isolation using samples from a patient infected with rabies virus.

    Panning, Marcus / Baumgarte, Sigrid / Pfefferle, Susanne / Maier, Tanja / Martens, Andreas / Drosten, Christian

    Journal of clinical microbiology

    2010  Volume 48, Issue 8, Page(s) 2960–2962

    Abstract: Definite and rapid diagnosis of rabies is required for individual case management as well as for public health. For the first time, a direct comparison of virus isolation with quantitative real-time reverse transcription (RT)-PCR on human rabies samples ... ...

    Abstract Definite and rapid diagnosis of rabies is required for individual case management as well as for public health. For the first time, a direct comparison of virus isolation with quantitative real-time reverse transcription (RT)-PCR on human rabies samples was conducted. RT-PCR was found to be more sensitive than virus isolation.
    MeSH term(s) Humans ; Rabies/diagnosis ; Rabies/virology ; Rabies virus/isolation & purification ; Reverse Transcriptase Polymerase Chain Reaction/methods ; Sensitivity and Specificity ; Virology/methods ; Virus Cultivation/methods
    Language English
    Publishing date 2010-06-16
    Publishing country United States
    Document type Comparative Study ; Evaluation Study ; Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 390499-4
    ISSN 1098-660X ; 0095-1137
    ISSN (online) 1098-660X
    ISSN 0095-1137
    DOI 10.1128/JCM.00728-10
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Differential host determinants contribute to the pathogenesis of 2009 pandemic H1N1 and human H5N1 influenza A viruses in experimental mouse models.

    Otte, Anna / Sauter, Martina / Alleva, Lisa / Baumgarte, Sigrid / Klingel, Karin / Gabriel, Gülsah

    The American journal of pathology

    2011  Volume 179, Issue 1, Page(s) 230–239

    Abstract: Influenza viruses are responsible for high morbidities in humans and may, eventually, cause pandemics. Herein, we compared the pathogenesis and host innate immune responses of a seasonal H1N1, two 2009 pandemic H1N1, and a human H5N1 influenza virus in ... ...

    Abstract Influenza viruses are responsible for high morbidities in humans and may, eventually, cause pandemics. Herein, we compared the pathogenesis and host innate immune responses of a seasonal H1N1, two 2009 pandemic H1N1, and a human H5N1 influenza virus in experimental BALB/c and C57BL/6J mouse models. We found that both 2009 pandemic H1N1 isolates studied (A/Hamburg/05/09 and A/Hamburg/NY1580/09) were low pathogenic in BALB/c mice [log mouse lethal dose 50 (MLD(50)) >6 plaque-forming units (PFU)] but displayed remarkable differences in virulence in C57BL/6J mice. A/Hamburg/NY1580/09 was more virulent (logMLD(50) = 3.5 PFU) than A/Hamburg/05/09 (logMLD(50) = 5.2 PFU) in C57BL/6J mice. In contrast, the H5N1 influenza virus was more virulent in BALB/c mice (logMLD(50) = 0.3 PFU) than in C57BL/6J mice (logMLD(50) = 1.8 PFU). Seasonal H1N1 influenza revealed marginal pathogenicity in BALB/c or C57BL/6J mice (logMLD(50) >6 PFU). Enhanced susceptibility of C57BL/6J mice to pandemic H1N1 correlated with a depressed cytokine response. In contrast, enhanced H5N1 virulence in BALB/c mice correlated with an elevated proinflammatory cytokine response. These findings highlight that host determinants responsible for the pathogenesis of 2009 pandemic H1N1 influenza viruses are different from those contributing to H5N1 pathogenesis. Our results show, for the first time to our knowledge, that the C57BL/6J mouse strain is more appropriate for the evaluation and identification of intrinsic pathogenicity markers of 2009 pandemic H1N1 influenza viruses that are "masked" in BALB/c mice.
    MeSH term(s) Adult ; Animals ; Cells, Cultured ; Cytokines/metabolism ; Disease Models, Animal ; Dogs ; Female ; Humans ; Influenza A Virus, H1N1 Subtype/pathogenicity ; Influenza A Virus, H5N1 Subtype/pathogenicity ; Influenza, Human/pathology ; Influenza, Human/virology ; Kidney/cytology ; Kidney/virology ; Lung/pathology ; Lung/virology ; Mice ; Mice, Inbred BALB C ; Mice, Inbred C57BL ; Orthomyxoviridae Infections/pathology ; Orthomyxoviridae Infections/virology ; Virulence ; Young Adult
    Chemical Substances Cytokines
    Language English
    Publishing date 2011-05-18
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2943-9
    ISSN 1525-2191 ; 0002-9440
    ISSN (online) 1525-2191
    ISSN 0002-9440
    DOI 10.1016/j.ajpath.2011.03.041
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Aichi virus shedding in high concentrations in patients with acute diarrhea.

    Drexler, Jan Felix / Baumgarte, Sigrid / de Souza Luna, Luciano Kleber / Eschbach-Bludau, Monika / Lukashev, Alexander N / Drosten, Christian

    Emerging infectious diseases

    2012  Volume 17, Issue 8, Page(s) 1544–1548

    Abstract: We assessed Aichi virus shedding in patients with gastroenteritis and negative test results for other viral and bacterial infections. High concentrations of up to 1.32 × 1012 RNA copies/g stool were found in 10 (2.0%) of 499 outpatients sampled in ... ...

    Abstract We assessed Aichi virus shedding in patients with gastroenteritis and negative test results for other viral and bacterial infections. High concentrations of up to 1.32 × 1012 RNA copies/g stool were found in 10 (2.0%) of 499 outpatients sampled in northern Germany, 2004. These data substantiate Aichi virus pathogenicity in humans.
    MeSH term(s) 5' Untranslated Regions/genetics ; Acute Disease ; Adolescent ; Adult ; Age Distribution ; Aged ; Aged, 80 and over ; Child ; Child, Preschool ; Diarrhea/epidemiology ; Diarrhea/virology ; Feces/virology ; Gene Dosage ; Germany/epidemiology ; Humans ; Infant ; Kobuvirus/classification ; Kobuvirus/genetics ; Kobuvirus/isolation & purification ; Kobuvirus/pathogenicity ; Middle Aged ; Molecular Sequence Data ; Picornaviridae Infections/epidemiology ; Picornaviridae Infections/virology ; RNA, Viral/analysis ; RNA, Viral/isolation & purification ; Reverse Transcriptase Polymerase Chain Reaction ; Sequence Analysis, DNA ; Virus Shedding ; Young Adult
    Chemical Substances 5' Untranslated Regions ; RNA, Viral
    Language English
    Publishing date 2012-05-11
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 1380686-5
    ISSN 1080-6059 ; 1080-6040
    ISSN (online) 1080-6059
    ISSN 1080-6040
    DOI 10.3201/eid1708.101556
    Database MEDical Literature Analysis and Retrieval System OnLINE

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