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  1. Article ; Online: The reaction of NADPH with bovine mitochondrial NADH:ubiquinone oxidoreductase revisited: II. Comparison of the proposed working hypothesis with literature data.

    Albracht, Simon P J

    Journal of bioenergetics and biomembranes

    2010  Volume 42, Issue 4, Page(s) 279–292

    Abstract: ... way. The Fe:FMN ratio's indicate that FMN-a is absent, but that all Fe-S clusters may be present ... from non-bovine origin, the pH dependencies of the NAD(P)H-->O(2) reactions and the pH-dependent reduction ... kinetics of the Fe-S clusters with NADPH have been determined. This excludes a proper discussion ...

    Abstract The first purification of bovine NADH:ubiquinone oxidoreductase (Complex I) was reported nearly half a century ago (Hatefi et al. J Biol Chem 237:1676-1680, 1962). The pathway of electron-transfer through the enzyme is still under debate. A major obstacle is the assignment of EPR signals to the individual iron-sulfur clusters in the subunits. The preceding paper described a working model based on the kinetics with NADPH. This model is at variance with current views in the field. The present paper provides a critical overview on the possible causes for the discrepancies. It is concluded that the stability of all purified preparations described thus far, including Hatefi's Complex I, is compromised due to removal of the enzyme from the protective membrane environment. In addition, most preparations described during the last two decades are purified by methods involving synthetic detergents and column chromatography. This results in delipidation, loss of endogenous quinones and loss of reactions with (artificial) quinones in a rotenone-sensitive way. The Fe:FMN ratio's indicate that FMN-a is absent, but that all Fe-S clusters may be present. In contrast to the situation in bovine SMP and Hatefi's Complex I, three of the six expected [4Fe-4S] clusters are not detected in EPR spectra. Qualitatively, the overall EPR lineshape of the remaining three cubane signals may seem similar to that of Hatefi's Complex I, but quantitatively it is not. It is further proposed that point mutations in any of the TYKY, PSST, 49-kDa or 30-kDa subunits, considered to make up the delicate structural heart of Complex I, may have unpredictable effects on any of the other subunits of this quartet. The fact that most point mutations led to inactive enzymes makes a correct interpretation of such mutations even more ambiguous. In none of the Complex-I-containing membrane preparations from non-bovine origin, the pH dependencies of the NAD(P)H-->O(2) reactions and the pH-dependent reduction kinetics of the Fe-S clusters with NADPH have been determined. This excludes a proper discussion on the absence or presence of FMN-a in native Complex I from other organisms.
    MeSH term(s) Animals ; Cattle ; Electron Spin Resonance Spectroscopy ; Electron Transport ; Electron Transport Complex I/chemistry ; Electron Transport Complex I/metabolism ; Humans ; Mitochondria, Heart/enzymology ; Mitochondria, Heart/metabolism ; NAD/metabolism ; NADP/metabolism
    Chemical Substances NAD (0U46U6E8UK) ; NADP (53-59-8) ; Electron Transport Complex I (EC 7.1.1.2)
    Language English
    Publishing date 2010-07-15
    Publishing country United States
    Document type Journal Article
    ZDB-ID 198499-8
    ISSN 1573-6881 ; 0145-479X ; 0449-5705
    ISSN (online) 1573-6881
    ISSN 0145-479X ; 0449-5705
    DOI 10.1007/s10863-010-9302-y
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  2. Article ; Online: The reaction of NADPH with bovine mitochondrial NADH:ubiquinone oxidoreductase revisited: I. Proposed consequences for electron transfer in the enzyme.

    Albracht, Simon P J

    Journal of bioenergetics and biomembranes

    2010  Volume 42, Issue 4, Page(s) 261–278

    Abstract: ... chain of prosthetic groups in Complex I. Ubiquinone is proposed to react with the Fe-S clusters ...

    Abstract Bovine NADH:ubiquinone oxidoreductase (Complex I) is the first complex in the mitochondrial respiratory chain. It has long been assumed that it contained only one FMN group. However, as demonstrated in 2003, the intact enzyme contains two FMN groups. The second FMN was proposed to be located in a conserved flavodoxin fold predicted to be present in the PSST subunit. The long-known reaction of Complex I with NADPH differs in many aspects from that with NADH. It was proposed that the second flavin group was specifically involved in the reaction with NADPH. The X-ray structure of the hydrophilic domain of Complex I from Thermus thermophilus (Sazanov and Hinchliffe 2006, Science 311, 1430-1436) disclosed the positions of all redox groups of that enzyme and of the subunits holding them. The PSST subunit indeed contains the predicted flavodoxin fold although it did not contain FMN. Inspired by this structure, the present paper describes a re-evaluation of the enigmatic reactions of the bovine enzyme with NADPH. Published data, as well as new freeze-quench kinetic data presented here, are incompatible with the general opinion that NADPH and NADH react at the same site. Instead, it is proposed that these pyridine nucleotides react at opposite ends of the 90 A long chain of prosthetic groups in Complex I. Ubiquinone is proposed to react with the Fe-S clusters in the TYKY subunit deep inside the hydrophilic domain. A new model for electron transfer in Complex I is proposed. In the accompanying paper this model is compared with the one advocated in current literature.
    MeSH term(s) Animals ; Cattle ; Electron Spin Resonance Spectroscopy ; Electron Transport Complex I/chemistry ; Electron Transport Complex I/metabolism ; Humans ; Hydrogen-Ion Concentration ; Mitochondria, Heart/enzymology ; Mitochondria, Heart/metabolism ; Models, Molecular ; NAD/metabolism ; NADP/metabolism ; Oxidation-Reduction ; Oxygen/metabolism
    Chemical Substances NAD (0U46U6E8UK) ; NADP (53-59-8) ; Electron Transport Complex I (EC 7.1.1.2) ; Oxygen (S88TT14065)
    Language English
    Publishing date 2010-07-14
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 198499-8
    ISSN 1573-6881 ; 0145-479X ; 0449-5705
    ISSN (online) 1573-6881
    ISSN 0145-479X ; 0449-5705
    DOI 10.1007/s10863-010-9301-z
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Movement in low gravity environments (MoLo) programme-The MoLo-L.O.O.P. study protocol.

    Herssens, Nolan / Cowburn, James / Albracht, Kirsten / Braunstein, Bjoern / Cazzola, Dario / Colyer, Steffi / Minetti, Alberto E / Pavei, Gaspare / Rittweger, Jörn / Weber, Tobias / Green, David A

    PloS one

    2022  Volume 17, Issue 11, Page(s) e0278051

    Abstract: ... ranging between 0.56-3.6 m/s, and perform plyometric movement trials at each gravity level (1, 0.7, 0.5, 0 ...

    Abstract Background: Exposure to prolonged periods in microgravity is associated with deconditioning of the musculoskeletal system due to chronic changes in mechanical stimulation. Given astronauts will operate on the Lunar surface for extended periods of time, it is critical to quantify both external (e.g., ground reaction forces) and internal (e.g., joint reaction forces) loads of relevant movements performed during Lunar missions. Such knowledge is key to predict musculoskeletal deconditioning and determine appropriate exercise countermeasures associated with extended exposure to hypogravity.
    Objectives: The aim of this paper is to define an experimental protocol and methodology suitable to estimate in high-fidelity hypogravity conditions the lower limb internal joint reaction forces. State-of-the-art movement kinetics, kinematics, muscle activation and muscle-tendon unit behaviour during locomotor and plyometric movements will be collected and used as inputs (Objective 1), with musculoskeletal modelling and an optimisation framework used to estimate lower limb internal joint loading (Objective 2).
    Methods: Twenty-six healthy participants will be recruited for this cross-sectional study. Participants will walk, skip and run, at speeds ranging between 0.56-3.6 m/s, and perform plyometric movement trials at each gravity level (1, 0.7, 0.5, 0.38, 0.27 and 0.16g) in a randomized order. Through the collection of state-of-the-art kinetics, kinematics, muscle activation and muscle-tendon behaviour, a musculoskeletal modelling framework will be used to estimate lower limb joint reaction forces via tracking simulations.
    Conclusion: The results of this study will provide first estimations of internal musculoskeletal loads associated with human movement performed in a range of hypogravity levels. Thus, our unique data will be a key step towards modelling the musculoskeletal deconditioning associated with long term habitation on the Lunar surface, and thereby aiding the design of Lunar exercise countermeasures and mitigation strategies.
    MeSH term(s) Humans ; Cross-Sectional Studies ; Movement/physiology ; Biomechanical Phenomena ; Hypogravity ; Weightlessness
    Language English
    Publishing date 2022-11-23
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2267670-3
    ISSN 1932-6203 ; 1932-6203
    ISSN (online) 1932-6203
    ISSN 1932-6203
    DOI 10.1371/journal.pone.0278051
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Heterodimerization of Kinesin-2 KIF3AB Modulates Entry into the Processive Run.

    Albracht, Clayton D / Guzik-Lendrum, Stephanie / Rayment, Ivan / Gilbert, Susan P

    The Journal of biological chemistry

    2016  Volume 291, Issue 44, Page(s) 23248–23256

    Abstract: Mammalian KIF3AB is an N-terminal processive kinesin-2 that is best known for its roles in intracellular transport. There has been significant interest in KIF3AB to define the key principles that underlie its processivity but also to define the ... ...

    Abstract Mammalian KIF3AB is an N-terminal processive kinesin-2 that is best known for its roles in intracellular transport. There has been significant interest in KIF3AB to define the key principles that underlie its processivity but also to define the mechanistic basis of its sensitivity to force. In this study, the kinetics for entry into the processive run were quantified. The results show for KIF3AB that the kinetics of microtubule association at 7 μm
    MeSH term(s) Adenosine Diphosphate/chemistry ; Adenosine Diphosphate/metabolism ; Animals ; Dimerization ; Kinesin/chemistry ; Kinesin/genetics ; Kinesin/metabolism ; Kinetics ; Mice ; Microtubules/chemistry ; Microtubules/metabolism
    Chemical Substances Kif3a protein, mouse ; Kif3b protein, mouse ; Adenosine Diphosphate (61D2G4IYVH) ; Kinesin (EC 3.6.4.4)
    Language English
    Publishing date 2016-09-16
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 2997-x
    ISSN 1083-351X ; 0021-9258
    ISSN (online) 1083-351X
    ISSN 0021-9258
    DOI 10.1074/jbc.M116.752196
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: Sex-Dependent Effects of Eicosapentaenoic Acid on Hepatic Steatosis in UCP1 Knockout Mice.

    Albracht-Schulte, Kembra / Wilson, Savanna / Johnson, Paige / Pahlavani, Mandana / Ramalingam, Latha / Goonapienuwala, Bimba / Kalupahana, Nishan S / Festuccia, William T / Scoggin, Shane / Kahathuduwa, Chanaka N / Moustaid-Moussa, Naima

    Biomedicines

    2021  Volume 9, Issue 11

    Abstract: Visceral obesity may be a driving factor in nonalcoholic fatty liver disease (NAFLD) development. Previous studies have shown that the omega-3 polyunsaturated fatty acid, eicosapentaenoic acid (EPA), ameliorates obesity in high-fat (HF) fed male, C57Bl/6 ...

    Abstract Visceral obesity may be a driving factor in nonalcoholic fatty liver disease (NAFLD) development. Previous studies have shown that the omega-3 polyunsaturated fatty acid, eicosapentaenoic acid (EPA), ameliorates obesity in high-fat (HF) fed male, C57Bl/6 mice at thermoneutral conditions, independent of uncoupling protein 1 (UCP1). Our goals herein were to investigate sex-dependent mechanisms of EPA in the livers of wild type (WT) and UCP1 knockout (KO) male and female mice fed a HF diet (45% kcal fat; WT-HF, KO-HF) with or without supplementation of 36 g/kg EPA (WT-EPA, KO-EPA). KO significantly increased body weight in males, with no significant reductions with EPA in the WT or KO groups. In females, there were no significant differences in body weight among KO groups and no effects of EPA. In males, liver TGs were significantly higher in the KO-HF group and reduced with EPA, which was not observed in females. Accordingly, gene and protein markers of mitochondrial oxidation, peroxisomal biogenesis and oxidation, as well as metabolic futile cycles were sex-dependently impacted by KO and EPA supplementation. These findings suggest a genotypic difference in response to dietary EPA supplementation on the livers of male and female mice with diet-induced obesity and housed at thermoneutrality.
    Language English
    Publishing date 2021-10-27
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2720867-9
    ISSN 2227-9059
    ISSN 2227-9059
    DOI 10.3390/biomedicines9111549
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  6. Article ; Online: Comparison of Different Training Algorithms for the Leg Extension Training with an Industrial Robot

    Ketelhut Maike / Göll Fabian / Braunstein Björn / Albracht Kirsten / Abel Dirk

    Current Directions in Biomedical Engineering, Vol 4, Iss 1, Pp 17-

    2018  Volume 20

    Abstract: ... paths are defined i n C artesian s pace by sufficient s upport p oses. I n t he i sotonic t raining s ... scenario however, the robot’s acceleration is a function of the force applied by the user. To validate ...

    Abstract In the past, different training scenarios have been developed and implemented on robotic research platforms, but no systematic analysis and comparison have been done so far. This paper deals with the comparison of an isokinematic (motion with constant velocity) and an isotonic (motion against constant weight) training algorithm. Both algorithms are designed for a robotic research platform consisting of a 3D force plate and a high payload industrial robot, which allows leg extension training with arbitrary six-dimensional motion trajectories. In the isokinematic as well as the isotonic training algorithm, individual paths are defined i n C artesian s pace by sufficient s upport p oses. I n t he i sotonic t raining s cenario, the trajectory is adapted to the measured force as the robot should only move along the trajectory as long as the force applied by the user exceeds a minimum threshold. In the isotonic training scenario however, the robot’s acceleration is a function of the force applied by the user. To validate these findings, a simulative experiment with a simple linear trajectory is performed. For this purpose, the same force path is applied in both training scenarios. The results illustrate that the algorithms differ in the force dependent trajectory adaption.
    Keywords rehabilitation technology and prosthetics ; surgical navigation and robotics ; Medicine ; R
    Subject code 629
    Language English
    Publishing date 2018-09-01T00:00:00Z
    Publisher De Gruyter
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  7. Article: The reaction of NADPH with bovine mitochondrial NADH:ubiquinone oxidoreductase revisited

    Albracht, Simon P. J

    Journal of bioenergetics and biomembranes. 2010 Aug., v. 42, no. 4

    2010  

    Abstract: ... way. The Fe:FMN ratio's indicate that FMN-a is absent, but that all Fe-S clusters may be present ... from non-bovine origin, the pH dependencies of the NAD(P)H→O₂ reactions and the pH-dependent reduction ... kinetics of the Fe-S clusters with NADPH have been determined. This excludes a proper discussion ...

    Abstract The first purification of bovine NADH:ubiquinone oxidoreductase (Complex I) was reported nearly half a century ago (Hatefi et al. J Biol Chem 237:1676-1680, 1962). The pathway of electron-transfer through the enzyme is still under debate. A major obstacle is the assignment of EPR signals to the individual iron-sulfur clusters in the subunits. The preceding paper described a working model based on the kinetics with NADPH. This model is at variance with current views in the field. The present paper provides a critical overview on the possible causes for the discrepancies. It is concluded that the stability of all purified preparations described thus far, including Hatefi's Complex I, is compromised due to removal of the enzyme from the protective membrane environment. In addition, most preparations described during the last two decades are purified by methods involving synthetic detergents and column chromatography. This results in delipidation, loss of endogenous quinones and loss of reactions with (artificial) quinones in a rotenone-sensitive way. The Fe:FMN ratio's indicate that FMN-a is absent, but that all Fe-S clusters may be present. In contrast to the situation in bovine SMP and Hatefi's Complex I, three of the six expected [4Fe-4S] clusters are not detected in EPR spectra. Qualitatively, the overall EPR lineshape of the remaining three cubane signals may seem similar to that of Hatefi's Complex I, but quantitatively it is not. It is further proposed that point mutations in any of the TYKY, PSST, 49-kDa or 30-kDa subunits, considered to make up the delicate structural heart of Complex I, may have unpredictable effects on any of the other subunits of this quartet. The fact that most point mutations led to inactive enzymes makes a correct interpretation of such mutations even more ambiguous. In none of the Complex-I-containing membrane preparations from non-bovine origin, the pH dependencies of the NAD(P)H→O₂ reactions and the pH-dependent reduction kinetics of the Fe-S clusters with NADPH have been determined. This excludes a proper discussion on the absence or presence of FMN-a in native Complex I from other organisms.
    Language English
    Dates of publication 2010-08
    Size p. 279-292.
    Publisher Springer US
    Publishing place Boston
    Document type Article
    ZDB-ID 198499-8
    ISSN 1573-6881 ; 0145-479X ; 0449-5705
    ISSN (online) 1573-6881
    ISSN 0145-479X ; 0449-5705
    DOI 10.1007/s10863-010-9302-y
    Database NAL-Catalogue (AGRICOLA)

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  8. Article: The reaction of NADPH with bovine mitochondrial NADH:ubiquinone oxidoreductase revisited

    Albracht, Simon P. J

    Journal of bioenergetics and biomembranes. 2010 Aug., v. 42, no. 4

    2010  

    Abstract: ... chain of prosthetic groups in Complex I. Ubiquinone is proposed to react with the Fe-S clusters ...

    Abstract Bovine NADH:ubiquinone oxidoreductase (Complex I) is the first complex in the mitochondrial respiratory chain. It has long been assumed that it contained only one FMN group. However, as demonstrated in 2003, the intact enzyme contains two FMN groups. The second FMN was proposed to be located in a conserved flavodoxin fold predicted to be present in the PSST subunit. The long-known reaction of Complex I with NADPH differs in many aspects from that with NADH. It was proposed that the second flavin group was specifically involved in the reaction with NADPH. The X-ray structure of the hydrophilic domain of Complex I from Thermus thermophilus (Sazanov and Hinchliffe 2006, Science 311, 1430-1436) disclosed the positions of all redox groups of that enzyme and of the subunits holding them. The PSST subunit indeed contains the predicted flavodoxin fold although it did not contain FMN. Inspired by this structure, the present paper describes a re-evaluation of the enigmatic reactions of the bovine enzyme with NADPH. Published data, as well as new freeze-quench kinetic data presented here, are incompatible with the general opinion that NADPH and NADH react at the same site. Instead, it is proposed that these pyridine nucleotides react at opposite ends of the 90 Å long chain of prosthetic groups in Complex I. Ubiquinone is proposed to react with the Fe-S clusters in the TYKY subunit deep inside the hydrophilic domain. A new model for electron transfer in Complex I is proposed. In the accompanying paper this model is compared with the one advocated in current literature.
    Language English
    Dates of publication 2010-08
    Size p. 261-278.
    Publisher Springer US
    Publishing place Boston
    Document type Article
    ZDB-ID 198499-8
    ISSN 1573-6881 ; 0145-479X ; 0449-5705
    ISSN (online) 1573-6881
    ISSN 0145-479X ; 0449-5705
    DOI 10.1007/s10863-010-9301-z
    Database NAL-Catalogue (AGRICOLA)

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  9. Article ; Online: Kinesin-2 KIF3AB exhibits novel ATPase characteristics.

    Albracht, Clayton D / Rank, Katherine C / Obrzut, Steven / Rayment, Ivan / Gilbert, Susan P

    The Journal of biological chemistry

    2014  Volume 289, Issue 40, Page(s) 27836–27848

    Abstract: ... that microtubule association was fast at 5.7 μm(-1) s(-1), followed by rate-limiting ADP release at 12.8 s(-1). ATP ... binding at 7.5 μm(-1) s(-1) was followed by an ATP-promoted isomerization at 84 s(-1) to form ... the intermediate poised for ATP hydrolysis, which then occurred at 33 s(-1). ATP hydrolysis was required ...

    Abstract KIF3AB is an N-terminal processive kinesin-2 family member best known for its role in intraflagellar transport. There has been significant interest in KIF3AB in defining the key principles that underlie the processivity of KIF3AB in comparison with homodimeric processive kinesins. To define the ATPase mechanism and coordination of KIF3A and KIF3B stepping, a presteady-state kinetic analysis was pursued. For these studies, a truncated murine KIF3AB was generated. The results presented show that microtubule association was fast at 5.7 μm(-1) s(-1), followed by rate-limiting ADP release at 12.8 s(-1). ATP binding at 7.5 μm(-1) s(-1) was followed by an ATP-promoted isomerization at 84 s(-1) to form the intermediate poised for ATP hydrolysis, which then occurred at 33 s(-1). ATP hydrolysis was required for dissociation of the microtubule·KIF3AB complex, which was observed at 22 s(-1). The dissociation step showed an apparent affinity for ATP that was very weak (K½,ATP at 133 μm). Moreover, the linear fit of the initial ATP concentration dependence of the dissociation kinetics revealed an apparent second-order rate constant at 0.09 μm(-1) s(-1), which is inconsistent with fast ATP binding at 7.5 μm(-1) s(-1) and a Kd ,ATP at 6.1 μm. These results suggest that ATP binding per se cannot account for the apparent weak K½,ATP at 133 μm. The steady-state ATPase Km ,ATP, as well as the dissociation kinetics, reveal an unusual property of KIF3AB that is not yet well understood and also suggests that the mechanochemistry of KIF3AB is tuned somewhat differently from homodimeric processive kinesins.
    MeSH term(s) Adenosine Diphosphate/metabolism ; Adenosine Triphosphatases/chemistry ; Adenosine Triphosphatases/genetics ; Adenosine Triphosphatases/metabolism ; Adenosine Triphosphate/metabolism ; Animals ; Dimerization ; Kinesin/chemistry ; Kinesin/genetics ; Kinesin/metabolism ; Kinetics ; Mice ; Microtubules/metabolism
    Chemical Substances Kif3a protein, mouse ; Kif3b protein, mouse ; Adenosine Diphosphate (61D2G4IYVH) ; Adenosine Triphosphate (8L70Q75FXE) ; Adenosine Triphosphatases (EC 3.6.1.-) ; Kinesin (EC 3.6.4.4)
    Language English
    Publishing date 2014-08-13
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 2997-x
    ISSN 1083-351X ; 0021-9258
    ISSN (online) 1083-351X
    ISSN 0021-9258
    DOI 10.1074/jbc.M114.583914
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article: Nickel hydrogenases: in search of the active site.

    Albracht, S P

    Biochimica et biophysica acta

    1994  Volume 1188, Issue 3, Page(s) 167–204

    MeSH term(s) Amino Acid Sequence ; Bacteria/enzymology ; Binding Sites ; Hydrogenase/chemistry ; Hydrogenase/classification ; Molecular Sequence Data ; Nickel/chemistry ; Oxidation-Reduction
    Chemical Substances Nickel (7OV03QG267) ; nickel-iron hydrogenase (EC 1.12.-) ; nickel-iron-selenium hydrogenase (EC 1.12.-) ; Hydrogenase (EC 1.12.7.2)
    Language English
    Publishing date 1994-12-30
    Publishing country Netherlands
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 60-7
    ISSN 1879-2596 ; 1879-260X ; 1872-8006 ; 1879-2642 ; 1879-2618 ; 1879-2650 ; 0006-3002 ; 0005-2728 ; 0005-2736 ; 0304-4165 ; 0167-4838 ; 1388-1981 ; 0167-4889 ; 0167-4781 ; 0304-419X ; 1570-9639 ; 0925-4439 ; 1874-9399
    ISSN (online) 1879-2596 ; 1879-260X ; 1872-8006 ; 1879-2642 ; 1879-2618 ; 1879-2650
    ISSN 0006-3002 ; 0005-2728 ; 0005-2736 ; 0304-4165 ; 0167-4838 ; 1388-1981 ; 0167-4889 ; 0167-4781 ; 0304-419X ; 1570-9639 ; 0925-4439 ; 1874-9399
    DOI 10.1016/0005-2728(94)90036-1
    Database MEDical Literature Analysis and Retrieval System OnLINE

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