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  1. Article: Biological characteristics and pathogenicity comparison of

    Zhang, Wei / Zhou, Kexin / Huang, Lei / Yang, Na / Lin, Lingyun / Chen, Lu / Yao, Jiayun / Dong, Mingxin / Shen, Jinyu / Pan, Xiaoyi

    Frontiers in veterinary science

    2024  Volume 11, Page(s) 1367066

    Abstract: ... Nocardia ... ...

    Abstract Nocardia seriolae
    Language English
    Publishing date 2024-04-10
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2834243-4
    ISSN 2297-1769
    ISSN 2297-1769
    DOI 10.3389/fvets.2024.1367066
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Correction to: Circ_0060077 Knockdown Alleviates High‑Glucose‑Induced Cell Apoptosis, Oxidative Stress, Inflammation and Fibrosis in HK‑2 Cells via miR‑145‑5p/VASN Pathway.

    Zhou, Jinjin / Peng, Xia / Ru, Yanhai / Xu, Jiayun

    Inflammation

    2022  Volume 46, Issue 2, Page(s) 780

    Language English
    Publishing date 2022-09-16
    Publishing country United States
    Document type Published Erratum
    ZDB-ID 434408-x
    ISSN 1573-2576 ; 0360-3997
    ISSN (online) 1573-2576
    ISSN 0360-3997
    DOI 10.1007/s10753-022-01740-y
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Influential factors on urine EV DNA methylation detection and its diagnostic potential in prostate cancer.

    Ding, Ting / Diao, Yanjun / Zeng, Xianfei / Zhou, Lei / Wu, Guojun / Liu, Jiayun / Hao, Xiaoke

    Frontiers in genetics

    2024  Volume 15, Page(s) 1338468

    Abstract: The value of Extracellular vesicles (EVs) diagnostic markers is widely recognized. However, current research on EV DNA remains limited. This study investigates the biological properties, preprocessing factors, and diagnostic potential of EV DNA. We found ...

    Abstract The value of Extracellular vesicles (EVs) diagnostic markers is widely recognized. However, current research on EV DNA remains limited. This study investigates the biological properties, preprocessing factors, and diagnostic potential of EV DNA. We found that DNA positive vesicles account for 23.3% ± 6.7% of the urine total EV, with a large amount of DNA attached to the outside. EV DNA fragments are large, there is no significant effect on uEV DNA when store urine less than 6 h at 4°C. In addition, the influence of different EV extraction methods on methylation detection is also minor. More importantly, RASSF1A methylation in urine total EV DNA can distinguish between PCa and BPH, with an AUC of 0.874. Our results suggest the potential of urine EV DNA as a novel marker for PCa diagnosis. This provides a new idea for the study of urinary tumor markers.
    Language English
    Publishing date 2024-02-19
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2606823-0
    ISSN 1664-8021
    ISSN 1664-8021
    DOI 10.3389/fgene.2024.1338468
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: MET Inhibits the Proliferation of EC Cells by Increasing MPA Sensitivity.

    Sun, Fang / Zhou, Jiayun / Hao, Yongxin / Kuang, Lei / Zhang, Bei

    Alternative therapies in health and medicine

    2023  Volume 29, Issue 5, Page(s) 334–341

    Abstract: Context: The high resistance rate and high recurrence rate of progesterone only as a treatment for endometrial cancer (EC) limit its clinical application. Metformin (MET) may have antitumor ability. Combining MET and medroxyprogesterone acetate (MPA) ... ...

    Abstract Context: The high resistance rate and high recurrence rate of progesterone only as a treatment for endometrial cancer (EC) limit its clinical application. Metformin (MET) may have antitumor ability. Combining MET and medroxyprogesterone acetate (MPA) may strengthen their inhibitory effects on proliferation of EC cells, but MET's mechanisms remain unclear.
    Objective: The study intended to identify the specific molecular mechanism that MET combined with MPA uses against EC progression.
    Design: The research team performed a controlled animal study.
    Setting: The study took place at Xuzhou Medical University in Xuzhou, China.
    Animals: The animals were16 female non-obese diabetic-severe combined immunodeficient (NOD-SCID) nude mice, about 12 to 16 g in weight.
    Interventions: The research team divided randomly, the mice into four groups and induced EC in all groups, four in each group: (1) The control group which received received normal saline, (2) the MPA group, which received 100 mg/kg of MPA; (3) the MET group, which received metformin at the rate of 200 mg/kg, each gavage volume was 0.1ml; (4) the MET+MPA group, which received 100 mg/kg of MPA and 200 mg/kg of MET.
    Outcome measures: The research team: (1) used a CCK-8 kit, an EdU assay, and a flow-cytometry assay to measure cancer-cell proliferation, count, and viability; determine the cell cycle; and measure apoptosis; (2) performed a Western blot analysis to determine the expression of the PR, CD133, pAkt, totalAkt, p-mTOR, and totalTOR antibodies; and (3) determined the size and volume of tumors in vivo and used immunohistochemical staining to determine expression of the Ki67 protein.
    Results: The MET+MPA group had a significantly lower number of cancer cells than the MET or MDA groups (both P < .001). That group also had significantly more stagnated cancer cells in the G0/G1 phase and significantly fewer cancer cells in the S phase or G2/M phase control, MET, or MPA groups (all P < .01). The MET+MPA group's PCNA and Ki-67 protein expression was significantly lower than that of the MET and MPA group. The EDU assay yielded similar results. Additionally, the MET+MPA group had significantly higher PR expression than that of to MET or MPA group (both P < .001). The MET and MPA groups' expression of CD133, p-Akt, and p-mTOR were significantly lower than those of the control group, while the MET+MPA group's levels were significantly lower than those of the MET and MPA groups. In-vivo experiments revealed that the MET and MPA groups did show decreased tumor size and volume. The MET+MPA group had tumor weights that were significantly lower and tumor volumes were significantly smaller than those of the MET and MPA groups (all P < .001). Immunohistochemical analysis revealed that the MET+MPA group's levels of the Ki-67 antigen were significantly lower than those of the MET and MPA groups.
    Conclusions: MET inhibited the proliferation of EC cells by increasing MPA-sensitivity, which was dependent on the inhibition of the CD133 expression and the Akt/mTOR pathway. In addition, if MET acts as an effective progestin sensitizer, it certainly offers promising therapeutic prospects for patients with early-stage EC or overgrown endometrium who have fertility requirements.
    MeSH term(s) Humans ; Female ; Animals ; Mice ; Medroxyprogesterone Acetate/pharmacology ; Medroxyprogesterone Acetate/therapeutic use ; Metformin/pharmacology ; Metformin/therapeutic use ; Mice, Nude ; Proto-Oncogene Proteins c-akt/pharmacology ; Proto-Oncogene Proteins c-akt/therapeutic use ; Receptors, Progesterone/metabolism ; Receptors, Progesterone/therapeutic use ; Mice, Inbred NOD ; Mice, SCID ; Endometrial Neoplasms/drug therapy ; Endometrial Neoplasms/metabolism ; Endometrial Neoplasms/pathology ; Cell Proliferation ; TOR Serine-Threonine Kinases/metabolism ; TOR Serine-Threonine Kinases/pharmacology ; TOR Serine-Threonine Kinases/therapeutic use ; Apoptosis ; Cell Line, Tumor
    Chemical Substances Medroxyprogesterone Acetate (C2QI4IOI2G) ; Metformin (9100L32L2N) ; Proto-Oncogene Proteins c-akt (EC 2.7.11.1) ; Receptors, Progesterone ; TOR Serine-Threonine Kinases (EC 2.7.11.1)
    Language English
    Publishing date 2023-05-31
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1225073-9
    ISSN 1078-6791
    ISSN 1078-6791
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Circ_0060077 Knockdown Alleviates High-Glucose-Induced Cell Apoptosis, Oxidative Stress, Inflammation and Fibrosis in HK-2 Cells via miR-145-5p/VASN Pathway.

    Zhou, Jinjin / Peng, Xia / Ru, Yanhai / Xu, Jiayun

    Inflammation

    2022  Volume 45, Issue 5, Page(s) 1911–1923

    Abstract: The involvement of circular RNAs (circRNAs) in the progression of diabetic nephropathy (DN) has been reported. However, the functions of circ_0060077 in DN remain unclear. HK-2 cells were treated with high glucose (HG) to establish DN cell model. ... ...

    Abstract The involvement of circular RNAs (circRNAs) in the progression of diabetic nephropathy (DN) has been reported. However, the functions of circ_0060077 in DN remain unclear. HK-2 cells were treated with high glucose (HG) to establish DN cell model. Quantitative real-time polymerase chain reaction (qRT-PCR) was proceeded to determine the levels of circ_0060077, microRNA-145-5p (miR-145-5p) and vasorin (VASN). Cell counting kit-8 (CCK-8) assay, 5-ethynyl-2'-deoxyuridine (EdU) assay and colony formation assay were conducted to assess cell proliferation ability. Flow cytometry analysis was employed for cell apoptosis. The oxidative stress level was evaluated by commercial kits. Enzyme-linked immunosorbent assay (ELISA) was adopted to examine the concentrations of inflammatory factors. Western blot assay was utilized for protein levels. Dual-luciferase reporter assay and RNA pull-down assay were manipulated to analyze the relationships among circ_0060077, miR-145-5p and VASN. Circ_0060077 level was increased in DN patients and HG-stimulated HK-2 cells. Circ_0060077 knockdown ameliorated the inhibitory effect of HG on HK-2 cell proliferation and the promotional effects on cell apoptosis, oxidative stress, inflammation and fibrosis. MiR-145-5p was identified as the target for circ_0060077 and miR-145-5p inhibition ameliorated the effect of circ_0060077 silencing on HG-induced HK-2 cell injury. Moreover, miR-145-5p directly bound to VASN. Overexpression of miR-145-5p facilitated cell proliferation and repressed apoptosis, oxidative injury, inflammation and fibrosis in HG-induced HK-2 cells by targeting VASN. Circ_0060077 silencing protected HK-2 cells from HG-induced damage by regulating miR-145-5p/VASN axis.
    MeSH term(s) Apoptosis ; Autoantigens/genetics ; Autoantigens/metabolism ; Carrier Proteins/genetics ; Carrier Proteins/metabolism ; Cell Cycle Proteins/genetics ; Cell Cycle Proteins/metabolism ; Cell Proliferation ; DNA, Complementary/genetics ; DNA, Complementary/metabolism ; Diabetic Nephropathies/genetics ; Diabetic Nephropathies/metabolism ; Fibrosis ; Glucose/toxicity ; Humans ; Inflammation ; Membrane Proteins/genetics ; Membrane Proteins/metabolism ; MicroRNAs/genetics ; MicroRNAs/metabolism ; Oxidative Stress ; RNA, Circular/genetics ; RNA, Circular/metabolism
    Chemical Substances Autoantigens ; Carrier Proteins ; Cell Cycle Proteins ; CEP250 protein, human ; DNA, Complementary ; MIRN145 microRNA, human ; Membrane Proteins ; MicroRNAs ; RNA, Circular ; VASN protein, human ; Glucose (IY9XDZ35W2)
    Language English
    Publishing date 2022-06-21
    Publishing country United States
    Document type Journal Article
    ZDB-ID 434408-x
    ISSN 1573-2576 ; 0360-3997
    ISSN (online) 1573-2576
    ISSN 0360-3997
    DOI 10.1007/s10753-022-01649-6
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Simultaneous determination of twelve neonicotinoids and six metabolites in human urine with isotope-dilution UPLC-Q-Orbitrap HRMS.

    Zhang, Boya / Wang, Zheng / Zhang, Jiming / Dai, Yiming / Ding, Jiayun / Guo, Jianqiu / Chen, Yuhang / Lu, Dasheng / Wu, Chunhua / Zhou, Zhijun

    Journal of chromatography. B, Analytical technologies in the biomedical and life sciences

    2024  Volume 1237, Page(s) 124084

    Abstract: The extensive global use of neonicotinoid insecticides (NNIs) has led to widespread human exposure, necessitating the development of effective methods for large-scale biomonitoring. However, current methods are inadequate in simultaneously and accurately ...

    Abstract The extensive global use of neonicotinoid insecticides (NNIs) has led to widespread human exposure, necessitating the development of effective methods for large-scale biomonitoring. However, current methods are inadequate in simultaneously and accurately detecting various NNIs or their metabolites (m-NNIs). In this study, we aimed to establish a robust method using solid-phase extraction (SPE)-ultra high performance liquid chromatography tandem Q-Orbitrap high resolution mass spectrometry (UPLC-Q-Orbitrap HRMS) for the simultaneous determination of 12 NNIs and 6 m-NNIs in human urine. Samples were prepared using Oasis HLB 96 well plate with Isopropanol: methanol (7:3, v/v) as the elution solvent. The target compounds were separated using the Accucore RP-MS column and subsequently analyzed under parallel reaction monitoring mode. NTN32692 (m/z = 255.06433) was confirmed to be the specific metabolite of cycloxaprid for the further detection. Satisfactory recoveries (81.6-122.4 %) of the NNIs and m-NNIs were observed, with intra- (n = 3) and inter-day (n = 9) relative standard deviation (RSD) ranging from 0.8 % to 13.7 % and from 1.1 % to 18.6 %, respectively. Good linearity (R
    MeSH term(s) Child ; Humans ; Chromatography, High Pressure Liquid/methods ; Tandem Mass Spectrometry/methods ; Neonicotinoids ; Insecticides/urine ; Limit of Detection ; Solid Phase Extraction
    Chemical Substances Neonicotinoids ; Insecticides
    Language English
    Publishing date 2024-03-14
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 1180823-8
    ISSN 1873-376X ; 0378-4347 ; 1570-0232 ; 1387-2273
    ISSN (online) 1873-376X
    ISSN 0378-4347 ; 1570-0232 ; 1387-2273
    DOI 10.1016/j.jchromb.2024.124084
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Graph Neural Network for Protein-Protein Interaction Prediction: A Comparative Study.

    Zhou, Hang / Wang, Weikun / Jin, Jiayun / Zheng, Zengwei / Zhou, Binbin

    Molecules (Basel, Switzerland)

    2022  Volume 27, Issue 18

    Abstract: Proteins are the fundamental biological macromolecules which underline practically all biological activities. Protein-protein interactions (PPIs), as they are known, are how proteins interact with other proteins in their environment to perform biological ...

    Abstract Proteins are the fundamental biological macromolecules which underline practically all biological activities. Protein-protein interactions (PPIs), as they are known, are how proteins interact with other proteins in their environment to perform biological functions. Understanding PPIs reveals how cells behave and operate, such as the antigen recognition and signal transduction in the immune system. In the past decades, many computational methods have been developed to predict PPIs automatically, requiring less time and resources than experimental techniques. In this paper, we present a comparative study of various graph neural networks for protein-protein interaction prediction. Five network models are analyzed and compared, including neural networks (NN), graph convolutional neural networks (GCN), graph attention networks (GAT), hyperbolic neural networks (HNN), and hyperbolic graph convolutions (HGCN). By utilizing the protein sequence information, all of these models can predict the interaction between proteins. Fourteen PPI datasets are extracted and utilized to compare the prediction performance of all these methods. The experimental results show that hyperbolic graph neural networks tend to have a better performance than the other methods on the protein-related datasets.
    MeSH term(s) Amino Acid Sequence ; Neural Networks, Computer ; Proteins/metabolism
    Chemical Substances Proteins
    Language English
    Publishing date 2022-09-19
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 1413402-0
    ISSN 1420-3049 ; 1431-5165 ; 1420-3049
    ISSN (online) 1420-3049
    ISSN 1431-5165 ; 1420-3049
    DOI 10.3390/molecules27186135
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Determination Factors for the Spatial Distribution of Forest Cover: A Case Study of China’s Fujian Province

    Dong, Jiayun / Zhou, Congyi / Liang, Wenyuan / Lu, Xu

    Forests. 2022 Dec. 05, v. 13, no. 12

    2022  

    Abstract: Understanding the determination factors of the spatial distribution of forest cover is crucial for global forest governance. This study contributed a nuanced case, focusing on the determination factors for the spatial distribution of forest cover in ... ...

    Abstract Understanding the determination factors of the spatial distribution of forest cover is crucial for global forest governance. This study contributed a nuanced case, focusing on the determination factors for the spatial distribution of forest cover in Fujian Province, China, in 2020. In order to achieve this, a high-resolution GIS-based data set was used, and spatial auto-correlation and geographic detector approaches were adopted. Three findings are presented in the results. First, the spatial distribution of forest cover is affected by natural conditions. In regions with more precipitation, higher altitude, or cooler temperatures, forest cover is higher. The relationship between the spatial distribution of forest cover and slope is an inverted-U shape. Second, socioeconomic factors have a greater explanatory capacity. In particular, regions with dense populations or roads have less forest cover. Third, there is an inverted-U-shaped relationship between the spatial distribution of forest cover and GDP per capita. With the growth of GDP per capita, forest cover is first positive, but subsequently negative. The results indicate that natural factors could shape the spatial distribution of forest cover, while socioeconomic factors could play a more significant role in the spatial distribution of forest cover.
    Keywords altitude ; autocorrelation ; case studies ; data collection ; forests ; governance ; China
    Language English
    Dates of publication 2022-1205
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article ; Online
    ZDB-ID 2527081-3
    ISSN 1999-4907
    ISSN 1999-4907
    DOI 10.3390/f13122070
    Database NAL-Catalogue (AGRICOLA)

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  9. Article ; Online: Dynamic Changes of Phenolic Composition, Antioxidant Capacity, and Gene Expression in 'Snow White' Loquat (

    Zhang, Kun / Zhou, Jiayun / Song, Panhui / Li, Xinyu / Peng, Xuemei / Huang, Yong / Ma, Qiaoli / Liang, Dong / Deng, Qunxian

    International journal of molecular sciences

    2023  Volume 25, Issue 1

    Abstract: The newly released 'Snow White' (SW), a white-fleshed loquat ( ...

    Abstract The newly released 'Snow White' (SW), a white-fleshed loquat (
    MeSH term(s) Eriobotrya/genetics ; Antioxidants ; Fruit/genetics ; Gene Expression ; Chlorogenic Acid/analogs & derivatives ; Quinic Acid/analogs & derivatives
    Chemical Substances 5'-O-caffeoylquinic acid (O4601UER1Z) ; Antioxidants ; Chlorogenic Acid (318ADP12RI) ; Quinic Acid (058C04BGYI)
    Language English
    Publishing date 2023-12-20
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2019364-6
    ISSN 1422-0067 ; 1422-0067 ; 1661-6596
    ISSN (online) 1422-0067
    ISSN 1422-0067 ; 1661-6596
    DOI 10.3390/ijms25010080
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  10. Article ; Online: Inhibition of the intracellular domain of Notch1 results in vascular endothelial cell dysfunction in sepsis.

    Liu, Tingyan / Zhang, Caiyan / Ying, Jiayun / Wang, Yaodong / Yan, Gangfeng / Zhou, Yufeng / Lu, Guoping

    Frontiers in immunology

    2023  Volume 14, Page(s) 1134556

    Abstract: Background: Notch signaling is critical for regulating the function of vascular endothelial cells (ECs). However, the effect of the intracellular domain of Notch1 (NICD) on EC injury in sepsis remains unclear.: Methods: We established a cell model of ...

    Abstract Background: Notch signaling is critical for regulating the function of vascular endothelial cells (ECs). However, the effect of the intracellular domain of Notch1 (NICD) on EC injury in sepsis remains unclear.
    Methods: We established a cell model of vascular endothelial dysfunction and induced sepsis in a mouse model
    Results: We found that LPS, interleukin 6, and serum collected from septic children could inhibit the expression of NICD and its downstream regulator Hes1, which impaired endothelial barrier function and led to EC apoptosis through the AKT pathway. Mechanistically, LPS decreased the stability of NICD by inhibiting the expression of a deubiquitylating enzyme, ubiquitin-specific proteases 8 (USP8). Melatonin, however, upregulated USP8 expression, thus maintaining the stability of NICD and Notch signaling, which ultimately reduced EC injury in our sepsis model and elevated the survival rate of septic mice.
    Conclusions: We found a previously uncharacterized role of Notch1 in mediating vascular permeability during sepsis, and we showed that inhibition of NICD resulted in vascular EC dysfunction in sepsis, which was reversed by melatonin. Thus, the Notch1 signaling pathway is a potential target for the treatment of sepsis.
    MeSH term(s) Animals ; Mice ; Endothelial Cells/metabolism ; Lipopolysaccharides ; Melatonin/pharmacology ; Sepsis/metabolism ; Signal Transduction
    Chemical Substances Lipopolysaccharides ; Melatonin (JL5DK93RCL) ; Notch1 protein, mouse
    Language English
    Publishing date 2023-05-02
    Publishing country Switzerland
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2606827-8
    ISSN 1664-3224 ; 1664-3224
    ISSN (online) 1664-3224
    ISSN 1664-3224
    DOI 10.3389/fimmu.2023.1134556
    Database MEDical Literature Analysis and Retrieval System OnLINE

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