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  1. Article ; Online: Spindle Cell Hibernoma of Perinephric Adipose Tissue: A Case Report.

    Mitra, Anupam / Vandewalker, Kristen M

    International journal of surgical pathology

    2024  , Page(s) 10668969241232696

    Abstract: Hibernoma is a relatively uncommon benign neoplasm of brown adipose tissue which usually affects head and neck region, thigh and rarely breast. There are different subtypes of hibernoma with the spindle cell-type is the least common one. Herein, we are ... ...

    Abstract Hibernoma is a relatively uncommon benign neoplasm of brown adipose tissue which usually affects head and neck region, thigh and rarely breast. There are different subtypes of hibernoma with the spindle cell-type is the least common one. Herein, we are reporting a case of this rare spindle cell hibernoma in a location which has not been previously reported: perinephric adipose tissue. This tumor was presented as a renal mass on imaging.
    Language English
    Publishing date 2024-03-18
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1336393-1
    ISSN 1940-2465 ; 1066-8969
    ISSN (online) 1940-2465
    ISSN 1066-8969
    DOI 10.1177/10668969241232696
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    Zs.A 4500: Show issues Location:
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  2. Article ; Online: Expression of Ber-EP4 and CD34 can distinguish clear-cell basal cell carcinoma from trichilemmoma: A case series.

    Mitra, Anupam / Schulman, Joshua M

    Indian journal of dermatology, venereology and leprology

    2023  Volume 90, Issue 1, Page(s) 118–120

    MeSH term(s) Humans ; Carcinoma, Basal Cell/diagnosis ; Carcinoma, Basal Cell/pathology ; Skin Neoplasms/pathology ; Hair Diseases ; Biomarkers, Tumor/metabolism ; Diagnosis, Differential
    Chemical Substances Biomarkers, Tumor
    Language English
    Publishing date 2023-06-12
    Publishing country United States
    Document type Letter
    ZDB-ID 416068-x
    ISSN 0973-3922 ; 0019-5162 ; 0378-6323
    ISSN (online) 0973-3922
    ISSN 0019-5162 ; 0378-6323
    DOI 10.25259/IJDVL_468_2022
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    Zs.A 85: Show issues Location:
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  3. Article ; Online: Metagenomics Data Visualization Using R.

    Coleman, Alex / Bose, Anupam / Mitra, Suparna

    Methods in molecular biology (Clifton, N.J.)

    2023  Volume 2649, Page(s) 359–392

    Abstract: Communicating key finds is a crucial part of the research process. Data visualization is the field of graphically representing data to help communicate key findings. Building on previous chapters around data manipulating using the R programming language ... ...

    Abstract Communicating key finds is a crucial part of the research process. Data visualization is the field of graphically representing data to help communicate key findings. Building on previous chapters around data manipulating using the R programming language this, chapter will explore how to use R to plot data and generate high-quality graphics. It will cover plotting using the base R plotting functionality and introduce the famous ggplot2 package [2] that is widely used for data visualization in R. After this general introduction to data visualization tools, the chapter will explore more specific data visualization techniques for metagenomics data and their use cases using these basic packages.
    MeSH term(s) Software ; Metagenomics ; Data Visualization ; Programming Languages
    Language English
    Publishing date 2023-05-31
    Publishing country United States
    Document type Journal Article
    ISSN 1940-6029
    ISSN (online) 1940-6029
    DOI 10.1007/978-1-0716-3072-3_19
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  4. Article ; Online: A sequence space search engine for computational protein design to modulate molecular functionality.

    Malik, Ayush / Banerjee, Anupam / Pal, Abantika / Mitra, Pralay

    Journal of biomolecular structure & dynamics

    2022  Volume 41, Issue 7, Page(s) 2937–2946

    Abstract: ... De- ... ...

    Abstract De-novo
    MeSH term(s) Search Engine ; Proteins/chemistry ; Amino Acid Sequence ; Computer Simulation ; Solvents
    Chemical Substances Proteins ; Solvents
    Language English
    Publishing date 2022-02-26
    Publishing country England
    Document type Journal Article
    ZDB-ID 49157-3
    ISSN 1538-0254 ; 0739-1102
    ISSN (online) 1538-0254
    ISSN 0739-1102
    DOI 10.1080/07391102.2022.2042386
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    Zs.A 2093: Show issues Location:
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  5. Article ; Online: The Free Sign in morphea and other sclerosing disorders: A clue to the presence of early sclerosis?

    Ortega-Springall, Maria Fernanda / Yang, Sarah / Mitra, Anupam / Fung, Maxwell A

    Journal of cutaneous pathology

    2023  Volume 51, Issue 1, Page(s) 58–62

    Abstract: Background: The Floating Sign is a histopathologic clue to the diagnosis of autoimmune sclerosing skin disorders such as morphea and interstitial granulomatous dermatitis (IGD). On the other hand, the "free-floating" sign has been associated with ... ...

    Abstract Background: The Floating Sign is a histopathologic clue to the diagnosis of autoimmune sclerosing skin disorders such as morphea and interstitial granulomatous dermatitis (IGD). On the other hand, the "free-floating" sign has been associated with neoplasms, for example, dermatofibroma and interstitial mycosis fungoides. Herein, we report the Free Sign in sclerosing skin disorders.
    Methods: In a case-control study, we applied detailed histopathologic definitions of Floating Sign and Free Sign to assess their presence in morphea, IGD, and other sclerosing disorders.
    Results: Free Sign was present in most cases of morphea (46/55, 84%) and IGD (7/13, 54%) but not necrobiosis lipoidica (NL) (6/14, 42.8%) or sclerodermoid graft versus host disease (SGVHD) (2/7, 28.5%). The sensitivity and specificity of Free Sign for morphea versus other disorders was 84% and 56%, respectively. Floating Sign was not identified in most cases: NL (3/14, 21.4%), SGVHD (1/7, 14.2%), morphea (5/55, 9%), IGD (1/13, 7.7%). The diagnostic sensitivity of Floating Sign in morphea was 9%.
    Conclusions: The Free Sign was present in most cases of morphea in our series and may represent a clue to the presence of evolving sclerosis. Free Sign may be seen in other sclerosing disorders. Technical artifact is a potential cause of a false-positive Free Sign.
    MeSH term(s) Humans ; Scleroderma, Localized/pathology ; Sclerosis ; Case-Control Studies ; Skin Diseases/pathology ; Necrobiosis Lipoidica/pathology ; Skin Neoplasms/pathology
    Language English
    Publishing date 2023-03-28
    Publishing country United States
    Document type Journal Article
    ZDB-ID 187078-6
    ISSN 1600-0560 ; 0303-6987
    ISSN (online) 1600-0560
    ISSN 0303-6987
    DOI 10.1111/cup.14421
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    Zs.A 1043: Show issues Location:
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  6. Article ; Online: Ebola Virus VP35 Protein: Modeling of the Tetrameric Structure and an Analysis of Its Interaction with Human PKR.

    Banerjee, Anupam / Mitra, Pralay

    Journal of proteome research

    2020  Volume 19, Issue 11, Page(s) 4533–4542

    Abstract: The Viral Protein 35 (VP35), a crucial protein of the Zaire Ebolavirus (EBOV), interacts with a plethora of human proteins to cripple the human immune system. Despite its importance, the entire structure of the tetrameric assembly of EBOV VP35 and the ... ...

    Abstract The Viral Protein 35 (VP35), a crucial protein of the Zaire Ebolavirus (EBOV), interacts with a plethora of human proteins to cripple the human immune system. Despite its importance, the entire structure of the tetrameric assembly of EBOV VP35 and the means by which it antagonizes the autophosphorylation of the kinase domain of human protein kinase R (PKR
    MeSH term(s) Ebolavirus ; Hemorrhagic Fever, Ebola ; Humans ; Nucleocapsid Proteins ; Viral Proteins
    Chemical Substances Nucleocapsid Proteins ; Viral Proteins ; nucleoprotein VP35, Ebola virus
    Keywords covid19
    Language English
    Publishing date 2020-09-18
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2078618-9
    ISSN 1535-3907 ; 1535-3893
    ISSN (online) 1535-3907
    ISSN 1535-3893
    DOI 10.1021/acs.jproteome.0c00473
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    Zs.A 6189: Show issues Location:
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  7. Article ; Online: Nintedanib-induced liver injury: Not every liver injury is virus or vaccine-induced in the era of COVID-19.

    Jena, Anuraag / Aggarwal, Tanushi / Mitra, Suvradeep / Singh, Anupam Kumar

    Liver international : official journal of the International Association for the Study of the Liver

    2022  Volume 42, Issue 5, Page(s) 1210–1211

    MeSH term(s) COVID-19 ; Chemical and Drug Induced Liver Injury, Chronic ; Humans ; Indoles ; Vaccines
    Chemical Substances Indoles ; Vaccines ; nintedanib (G6HRD2P839)
    Language English
    Publishing date 2022-02-28
    Publishing country United States
    Document type Letter
    ZDB-ID 2102783-3
    ISSN 1478-3231 ; 1478-3223
    ISSN (online) 1478-3231
    ISSN 1478-3223
    DOI 10.1111/liv.15206
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    Zs.A 1632: Show issues Location:
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  8. Article ; Online: Estimating the Effect of Single-Point Mutations on Protein Thermodynamic Stability and Analyzing the Mutation Landscape of the p53 Protein.

    Banerjee, Anupam / Mitra, Pralay

    Journal of chemical information and modeling

    2020  Volume 60, Issue 6, Page(s) 3315–3323

    Abstract: Nonsynonymous single-nucleotide polymorphisms often result in altered protein stability while playing crucial roles both in the evolution process and in the development of human diseases. Prediction of change in the thermodynamic stability due to such ... ...

    Abstract Nonsynonymous single-nucleotide polymorphisms often result in altered protein stability while playing crucial roles both in the evolution process and in the development of human diseases. Prediction of change in the thermodynamic stability due to such missense mutations will help in protein engineering endeavors and will contribute to a better understanding of different disease conditions. Here, we develop a machine-learning-based framework, viz., ProTSPoM, to estimate the change in protein thermodynamic stability arising out of single-point mutations (SPMs). ProTSPoM outperforms existing methods on the S2648 and S1925 databases and reports a Pearson correlation coefficient of 0.82 (0.88) and a root-mean-squared-error of 0.92 (1.06) kcal/mol between the predicted and experimental ΔΔ
    MeSH term(s) Humans ; Mutation ; Point Mutation ; Protein Stability ; Thermodynamics ; Tumor Suppressor Protein p53/genetics ; Tumor Suppressor Protein p53/metabolism
    Chemical Substances TP53 protein, human ; Tumor Suppressor Protein p53
    Language English
    Publishing date 2020-05-21
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 190019-5
    ISSN 1549-960X ; 0095-2338
    ISSN (online) 1549-960X
    ISSN 0095-2338
    DOI 10.1021/acs.jcim.0c00256
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    Zs.A 1230: Show issues Location:
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  9. Book ; Online: Optimizing Odia Braille Literacy

    Parida, Monnie / Sinha, Manjira / Basu, Anupam / Mitra, Pabitra

    The Influence of Speed on Error Reduction and Enhanced Comprehension

    2023  

    Abstract: This study aims to conduct an extensive detailed analysis of the Odia Braille reading comprehension among students with visual disability. Specifically, the study explores their reading speed and hand or finger movements. The study also aims to ... ...

    Abstract This study aims to conduct an extensive detailed analysis of the Odia Braille reading comprehension among students with visual disability. Specifically, the study explores their reading speed and hand or finger movements. The study also aims to investigate any comprehension difficulties and reading errors they may encounter. Six students from the 9th and 10th grades, aged between 14 and 16, participated in the study. We observed participants hand movements to understand how reading errors were connected to hand movement and identify the students reading difficulties. We also evaluated the participants Odia Braille reading skills, including their reading speed (in words per minute), errors, and comprehension. The average speed of Odia Braille reader is 17.64wpm. According to the study, there was a noticeable correlation between reading speed and reading errors. As reading speed decreased, the number of reading errors tended to increase. Moreover, the study established a link between reduced Braille reading errors and improved reading comprehension. In contrast, the study found that better comprehension was associated with increased reading speed. The researchers concluded with some interesting findings about preferred Braille reading patterns. These findings have important theoretical, developmental, and methodological implications for instruction.

    Comment: 4 Pages, Paper accepted in Diversity and Inclusion track at CODS-COMAD 2024
    Keywords Computer Science - Computation and Language
    Subject code 420
    Publishing date 2023-10-12
    Publishing country us
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  10. Article: Images in GI Infection: Intestinal Spirochetosis

    Sachan, Anurag / Parkhi, Mayur / Mitra, Suvradeep / Singh, Anupam K.

    Journal of Gastrointestinal Infections

    2022  Volume 12, Issue 01, Page(s) 62–63

    Language English
    Publishing date 2022-01-01
    Publisher Thieme Medical and Scientific Publishers Pvt. Ltd.
    Publishing place Stuttgart ; New York
    Document type Article
    ISSN 2583-844X
    ISSN (online) 2583-844X
    DOI 10.1055/s-0042-1757501
    Database Thieme publisher's database

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