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  1. Article ; Online: Wheat-Based Glues in Conservation and Cultural Heritage: (Dis)solving the Proteome of Flour and Starch Pastes and Their Adhering Properties.

    Prisby, Rocio / Luchini, Alessandra / Liotta, Lance A / Solazzo, Caroline

    Journal of proteome research

    2024  Volume 23, Issue 5, Page(s) 1649–1665

    Abstract: Plant-based adhesives, such as those made from wheat, have been prominently used for books and paper-based objects and are also used as conservation adhesives. Starch paste originates from starch granules, whereas flour paste encompasses the entire wheat ...

    Abstract Plant-based adhesives, such as those made from wheat, have been prominently used for books and paper-based objects and are also used as conservation adhesives. Starch paste originates from starch granules, whereas flour paste encompasses the entire wheat endosperm proteome, offering strong adhesive properties due to gluten proteins. From a conservation perspective, understanding the precise nature of the adhesive is vital as the longevity, resilience, and reaction to environmental changes can differ substantially between starch- and flour-based pastes. We devised a proteomics method to discern the protein content of these pastes. Protocols involved extracting soluble proteins using 0.5 M NaCl and 30 mM Tris-HCl solutions and then targeting insoluble proteins, such as gliadins and glutenins, with a buffer containing 7 M urea, 2 M thiourea, 4% CHAPS, 40 mM Tris, and 75 mM DTT. Flour paste's proteome is diverse (1942 proteins across 759 groups), contrasting with starch paste's predominant starch-associated protein makeup (218 proteins in 58 groups). Transformation into pastes reduces proteomes' complexity. Testing on historical bookbindings confirmed the use of flour-based glue, which is rich in gluten and serpins. High levels of deamidation were detected, particularly for glutamine residues, which can impact the solubility and stability of the glue over time. The mass spectrometry proteomics data have been deposited to the ProteomeXchange, Consortium (http://proteomecentral.proteomexchange.org) via the MassIVE partner repository with the data set identifier MSV000093372 (ftp://MSV000093372@massive.ucsd.edu).
    MeSH term(s) Triticum/chemistry ; Flour/analysis ; Starch/chemistry ; Proteome/analysis ; Proteome/chemistry ; Adhesives/chemistry ; Glutens/chemistry ; Glutens/analysis ; Proteomics/methods ; Plant Proteins/analysis ; Gliadin/chemistry ; Gliadin/analysis
    Chemical Substances Starch (9005-25-8) ; Proteome ; Adhesives ; Glutens (8002-80-0) ; Plant Proteins ; Gliadin (9007-90-3)
    Language English
    Publishing date 2024-04-04
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2078618-9
    ISSN 1535-3907 ; 1535-3893
    ISSN (online) 1535-3907
    ISSN 1535-3893
    DOI 10.1021/acs.jproteome.3c00804
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Unconventional Approaches to Direct Detection of Borreliosis and Other Tick Borne Illnesses: A Path Forward.

    Liotta, Lance / Luchini, Alessandra

    Journal of cellular immunology

    2020  Volume 3, Issue 3, Page(s) 164–172

    Language English
    Publishing date 2020-02-05
    Publishing country United States
    Document type Journal Article
    ISSN 2689-2812
    ISSN (online) 2689-2812
    DOI 10.33696/immunology.3.094
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Effect of Cholesterol on the Structure and Composition of Glyco-DIBMA Lipid Particles.

    Lenz, Julia / Larsen, Andreas Haahr / Keller, Sandro / Luchini, Alessandra

    Langmuir : the ACS journal of surfaces and colloids

    2023  Volume 39, Issue 10, Page(s) 3569–3579

    Abstract: Different amphiphilic co-polymers have been introduced to produce polymer-lipid particles with nanodisc structure composed of an inner lipid bilayer and polymer chains self-assembled as an outer belt. These particles can be used to stabilize membrane ... ...

    Abstract Different amphiphilic co-polymers have been introduced to produce polymer-lipid particles with nanodisc structure composed of an inner lipid bilayer and polymer chains self-assembled as an outer belt. These particles can be used to stabilize membrane proteins in solution and enable their characterization by means of biophysical methods, including small-angle X-ray scattering (SAXS). Some of these co-polymers have also been used to directly extract membrane proteins together with their associated lipids from native membranes. Styrene/maleic acid and diisobutylene/maleic acid are among the most commonly used co-polymers for producing polymer-lipid particles, named SMALPs and DIBMALPs, respectively. Recently, a new co-polymer, named Glyco-DIBMA, was produced by partial amidation of DIBMA with the amino sugar
    MeSH term(s) Dimyristoylphosphatidylcholine/chemistry ; Scattering, Small Angle ; X-Ray Diffraction ; Lipid Bilayers/chemistry ; Maleates/chemistry ; Polymers/chemistry ; Membrane Proteins/chemistry ; Cholesterol/chemistry
    Chemical Substances maleic acid (91XW058U2C) ; Dimyristoylphosphatidylcholine (U86ZGC74V5) ; Lipid Bilayers ; Maleates ; Polymers ; Membrane Proteins ; Cholesterol (97C5T2UQ7J)
    Language English
    Publishing date 2023-02-28
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2005937-1
    ISSN 1520-5827 ; 0743-7463
    ISSN (online) 1520-5827
    ISSN 0743-7463
    DOI 10.1021/acs.langmuir.2c03019
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Mimicking the Mammalian Plasma Membrane: An Overview of Lipid Membrane Models for Biophysical Studies.

    Luchini, Alessandra / Vitiello, Giuseppe

    Biomimetics (Basel, Switzerland)

    2020  Volume 6, Issue 1

    Abstract: Cell membranes are very complex biological systems including a large variety of lipids and proteins. Therefore, they are difficult to extract and directly investigate with biophysical methods. For many decades, the characterization of simpler biomimetic ... ...

    Abstract Cell membranes are very complex biological systems including a large variety of lipids and proteins. Therefore, they are difficult to extract and directly investigate with biophysical methods. For many decades, the characterization of simpler biomimetic lipid membranes, which contain only a few lipid species, provided important physico-chemical information on the most abundant lipid species in cell membranes. These studies described physical and chemical properties that are most likely similar to those of real cell membranes. Indeed, biomimetic lipid membranes can be easily prepared in the lab and are compatible with multiple biophysical techniques. Lipid phase transitions, the bilayer structure, the impact of cholesterol on the structure and dynamics of lipid bilayers, and the selective recognition of target lipids by proteins, peptides, and drugs are all examples of the detailed information about cell membranes obtained by the investigation of biomimetic lipid membranes. This review focuses specifically on the advances that were achieved during the last decade in the field of biomimetic lipid membranes mimicking the mammalian plasma membrane. In particular, we provide a description of the most common types of lipid membrane models used for biophysical characterization, i.e., lipid membranes in solution and on surfaces, as well as recent examples of their applications for the investigation of protein-lipid and drug-lipid interactions. Altogether, promising directions for future developments of biomimetic lipid membranes are the further implementation of natural lipid mixtures for the development of more biologically relevant lipid membranes, as well as the development of sample preparation protocols that enable the incorporation of membrane proteins in the biomimetic lipid membranes.
    Language English
    Publishing date 2020-12-31
    Publishing country Switzerland
    Document type Journal Article ; Review
    ISSN 2313-7673
    ISSN (online) 2313-7673
    DOI 10.3390/biomimetics6010003
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Protocol for Investigating the Interactions Between Intrinsically Disordered Proteins and Membranes by Neutron Reflectometry.

    Luchini, Alessandra / Arleth, Lise

    Methods in molecular biology (Clifton, N.J.)

    2020  Volume 2141, Page(s) 569–584

    Abstract: Several intrinsically disordered proteins (IDPs) exhibit high affinity for lipid membranes. Among the different biophysical methods to probe protein-lipid interaction, neutron reflectometry (NR) can provide direct and structural detailed information on ... ...

    Abstract Several intrinsically disordered proteins (IDPs) exhibit high affinity for lipid membranes. Among the different biophysical methods to probe protein-lipid interaction, neutron reflectometry (NR) can provide direct and structural detailed information on the location of the IDP with respect to the membrane. Supported lipid bilayers are commonly used as cell membrane models in such experiments. NR measurements can be collected on the supported lipid bilayer before and after the interaction with the IDP to characterize whether the protein molecules are mainly located on the membrane surface (interaction with the lipid headgroups), are penetrating into the hydrophobic region of the membrane (interaction with the lipid acyl chains), or are not interacting at all with the membrane. The lipid composition of the supported lipid bilayer can easily be tuned; hence the NR experiments can be designed to investigate selective IDP-lipid interactions.This chapter will describe the fundamental steps for performing an NR experiment and the subsequent data analysis aimed at characterizing IDP-lipid bilayer interactions. The specific case of an intrinsically disordered region (IDR) from the membrane protein Na
    MeSH term(s) Equipment Design ; Hydrogen ; Hydrophobic and Hydrophilic Interactions ; Intrinsically Disordered Proteins/chemistry ; Intrinsically Disordered Proteins/metabolism ; Lipid Bilayers ; Membrane Lipids/metabolism ; Methods ; Neutrons ; Nitrogen Isotopes ; Phosphatidylcholines/chemistry ; Scattering, Radiation ; Signal Processing, Computer-Assisted ; Sodium-Hydrogen Exchanger 1/chemistry ; Sodium-Hydrogen Exchanger 1/metabolism ; Software ; Unilamellar Liposomes/metabolism
    Chemical Substances Intrinsically Disordered Proteins ; Lipid Bilayers ; Membrane Lipids ; Nitrogen Isotopes ; Nitrogen-15 ; Phosphatidylcholines ; SLC9A1 protein, human ; Sodium-Hydrogen Exchanger 1 ; Unilamellar Liposomes ; Hydrogen (7YNJ3PO35Z) ; 1-palmitoyl-2-oleoylphosphatidylcholine (TE895536Y5)
    Language English
    Publishing date 2020-07-21
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ISSN 1940-6029
    ISSN (online) 1940-6029
    DOI 10.1007/978-1-0716-0524-0_29
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: Understanding the Nano-bio Interfaces: Lipid-Coatings for Inorganic Nanoparticles as Promising Strategy for Biomedical Applications.

    Luchini, Alessandra / Vitiello, Giuseppe

    Frontiers in chemistry

    2019  Volume 7, Page(s) 343

    Abstract: Inorganic nanoparticles (NPs) exhibit relevant physical properties for application in biomedicine and specifically for both the diagnosis and therapy (i.e. theranostic) of severe pathologies, such as cancer. The inorganic NP core is often not stable in ... ...

    Abstract Inorganic nanoparticles (NPs) exhibit relevant physical properties for application in biomedicine and specifically for both the diagnosis and therapy (i.e. theranostic) of severe pathologies, such as cancer. The inorganic NP core is often not stable in aqueous suspension and can induce cytotoxic effects. For this reason, over the years, several coating strategies were suggested to improve the NP stability in aqueous solutions as well as the NP biocompatibility. Among the various components which can be used for NP coatings, lipids, and in particular phospholipids emerged as versatile molecular building blocks for the production of NP coatings suitable for biomedical application. The recent synthetic efforts in NP lipid coatings allows today to introduce on the NP surface a large variety of lipid molecules eventually in mixture with amphiphilic or hydrophobic drugs or active molecules for cell targeting. In this review, the most relevant examples of NP lipid-coatings are presented and grouped in two main categories: supported lipid bilayers (SLB) and hybrid lipid bilayers (HLB). The discussed scientific cases take into account the most commonly used inorganic NP for biomedical applications in cancer therapy and diagnosis.
    Language English
    Publishing date 2019-05-15
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2711776-5
    ISSN 2296-2646
    ISSN 2296-2646
    DOI 10.3389/fchem.2019.00343
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: A Set of Diagnostic Tests for Detection of Active

    Chand, Meenal / Vydyam, Pratap / Pal, Anasuya C / Thekkiniath, Jose / Darif, Dounia / Li, Zeng / Choi, Jae-Yeon / Magni, Ruben / Luchini, Alessandra / Tonnetti, Laura / Horn, Elizabeth J / Tufts, Danielle M / Ben Mamoun, Choukri

    medRxiv : the preprint server for health sciences

    2024  

    Abstract: Human babesiosis is a rapidly emerging and potentially fatal tick-borne disease caused by intraerythrocytic apicomplexan parasites of the : Short summary: We developed two ELISA-based assays, BdACA38 and BdACA234, for ... ...

    Abstract Human babesiosis is a rapidly emerging and potentially fatal tick-borne disease caused by intraerythrocytic apicomplexan parasites of the
    Short summary: We developed two ELISA-based assays, BdACA38 and BdACA234, for detecting
    Language English
    Publishing date 2024-03-26
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2024.03.25.24304816
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Identification of Unambiguous Borrelia Peptides in Human Urine Using Affinity Capture and Mass Spectrometry.

    Cornero, Rocio / Irfan, Sumaiya Safia / Cachaco, Silvia / Zhou, Weidong / Byne, Ahana / Howard, Marissa / McIntyre, Hope / Birkaya, Barbara / Liotta, Lance / Luchini, Alessandra

    Methods in molecular biology (Clifton, N.J.)

    2024  Volume 2742, Page(s) 105–122

    Abstract: The combination of advanced mass spectrometry and enrichment-based sample preparation methods has enhanced analytical capabilities in clinical proteomics. In this chapter, we describe a method of proteome analysis to identify Borrelia-derived peptides in ...

    Abstract The combination of advanced mass spectrometry and enrichment-based sample preparation methods has enhanced analytical capabilities in clinical proteomics. In this chapter, we describe a method of proteome analysis to identify Borrelia-derived peptides in urine that includes a sample affinity enrichment method coupled with liquid chromatography tandem mass spectrometry analysis and a bioinformatic peptide authentication algorithm.
    MeSH term(s) Humans ; Borrelia ; Tandem Mass Spectrometry/methods ; Peptides/chemistry ; Chromatography, Liquid/methods ; Proteome/analysis
    Chemical Substances Peptides ; Proteome
    Language English
    Publishing date 2024-01-02
    Publishing country United States
    Document type Journal Article
    ISSN 1940-6029
    ISSN (online) 1940-6029
    DOI 10.1007/978-1-0716-3561-2_9
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article: Structural model of tissue factor (TF) and TF-factor VIIa complex in a lipid membrane: A combined experimental and computational study

    Luchini, Alessandra / Tidemand, Frederik Grønbæk / Araya-Secchi, Raul / Campana, Mario / Cárdenas, Marité / Arleth, Lise

    Journal of colloid and interface science. 2022 Oct., v. 623

    2022  

    Abstract: Tissue factor (TF) is a membrane protein involved in blood coagulation. TF initiates a cascade of proteolytic reactions, ultimately leading to the formation of a blood clot. The first reaction consists of the binding of the coagulation factor VII and its ...

    Abstract Tissue factor (TF) is a membrane protein involved in blood coagulation. TF initiates a cascade of proteolytic reactions, ultimately leading to the formation of a blood clot. The first reaction consists of the binding of the coagulation factor VII and its conversion to the activated form, FVIIa. Here, we combined experimental, i.e. quartz crystal microbalance with dissipation monitoring and neutron reflectometry, and computational, i.e. molecular dynamics (MD) simulation, methods to derive a complete structural model of TF and TF/FVIIa complex in a lipid bilayer. This model shows that the TF transmembrane domain (TMD), and the flexible linker connecting the TMD to the extracellular domain (ECD), define the location of the ECD on the membrane surface. The average orientation of the ECD relative to the bilayer surface is slightly tilted towards the lipid headgroups, a conformation that we suggest is promoted by phosphatidylserine lipids, and favours the binding of FVIIa. On the other hand, the formation of the TF/FVIIa complex induces minor changes in the TF structure, and reduces the conformational freedom of both TF and FVIIA. Altogether we describe the protein-protein and protein-lipid interactions favouring blood coagulation, but also instrumental to the development of new drugs.
    Keywords blood coagulation ; coagulation ; lipid bilayers ; membrane proteins ; models ; molecular dynamics ; phosphatidylserines ; proteolysis ; quartz crystal microbalance ; reflectometry
    Language English
    Dates of publication 2022-10
    Size p. 294-305.
    Publishing place Elsevier Inc.
    Document type Article
    ZDB-ID 241597-5
    ISSN 1095-7103 ; 0021-9797
    ISSN (online) 1095-7103
    ISSN 0021-9797
    DOI 10.1016/j.jcis.2022.04.147
    Database NAL-Catalogue (AGRICOLA)

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  10. Article ; Online: Understanding the Nano-bio Interfaces

    Alessandra Luchini / Giuseppe Vitiello

    Frontiers in Chemistry, Vol

    Lipid-Coatings for Inorganic Nanoparticles as Promising Strategy for Biomedical Applications

    2019  Volume 7

    Abstract: Inorganic nanoparticles (NPs) exhibit relevant physical properties for application in biomedicine and specifically for both the diagnosis and therapy (i.e. theranostic) of severe pathologies, such as cancer. The inorganic NP core is often not stable in ... ...

    Abstract Inorganic nanoparticles (NPs) exhibit relevant physical properties for application in biomedicine and specifically for both the diagnosis and therapy (i.e. theranostic) of severe pathologies, such as cancer. The inorganic NP core is often not stable in aqueous suspension and can induce cytotoxic effects. For this reason, over the years, several coating strategies were suggested to improve the NP stability in aqueous solutions as well as the NP biocompatibility. Among the various components which can be used for NP coatings, lipids, and in particular phospholipids emerged as versatile molecular building blocks for the production of NP coatings suitable for biomedical application. The recent synthetic efforts in NP lipid coatings allows today to introduce on the NP surface a large variety of lipid molecules eventually in mixture with amphiphilic or hydrophobic drugs or active molecules for cell targeting. In this review, the most relevant examples of NP lipid-coatings are presented and grouped in two main categories: supported lipid bilayers (SLB) and hybrid lipid bilayers (HLB). The discussed scientific cases take into account the most commonly used inorganic NP for biomedical applications in cancer therapy and diagnosis.
    Keywords lipids ; inorganic nanoparticles ; lipid coating ; biomembranes ; theranostic ; Chemistry ; QD1-999
    Subject code 620
    Language English
    Publishing date 2019-05-01T00:00:00Z
    Publisher Frontiers Media S.A.
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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