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  1. Article ; Online: Ligand-Based Regulation of Dynamics and Reactivity of Hemoproteins.

    Turilli-Ghisolfi, Emily Samuela / Lualdi, Marta / Fasano, Mauro

    Biomolecules

    2023  Volume 13, Issue 4

    Abstract: Hemoproteins include several heme-binding proteins with distinct structure and function. The presence of the heme group confers specific reactivity and spectroscopic properties to hemoproteins. In this review, we provide an overview of five families of ... ...

    Abstract Hemoproteins include several heme-binding proteins with distinct structure and function. The presence of the heme group confers specific reactivity and spectroscopic properties to hemoproteins. In this review, we provide an overview of five families of hemoproteins in terms of dynamics and reactivity. First, we describe how ligands modulate cooperativity and reactivity in globins, such as myoglobin and hemoglobin. Second, we move on to another family of hemoproteins devoted to electron transport, such as cytochromes. Later, we consider heme-based reactivity in hemopexin, the main heme-scavenging protein. Then, we focus on heme-albumin, a chronosteric hemoprotein with peculiar spectroscopic and enzymatic properties. Eventually, we analyze the reactivity and dynamics of the most recently discovered family of hemoproteins, i.e., nitrobindins.
    MeSH term(s) Heme/metabolism ; Ligands ; Hemeproteins/chemistry ; Hemeproteins/metabolism
    Chemical Substances Heme (42VZT0U6YR) ; Ligands ; Hemeproteins
    Language English
    Publishing date 2023-04-17
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2701262-1
    ISSN 2218-273X ; 2218-273X
    ISSN (online) 2218-273X
    ISSN 2218-273X
    DOI 10.3390/biom13040683
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Looking at COVID-19 from a Systems Biology Perspective.

    Turilli, Emily Samuela / Lualdi, Marta / Fasano, Mauro

    Biomolecules

    2022  Volume 12, Issue 2

    Abstract: The sudden outbreak and worldwide spread of the SARS-CoV-2 pandemic pushed the scientific community to find fast solutions to cope with the health emergency. COVID-19 complexity, in terms of clinical outcomes, severity, and response to therapy suggested ... ...

    Abstract The sudden outbreak and worldwide spread of the SARS-CoV-2 pandemic pushed the scientific community to find fast solutions to cope with the health emergency. COVID-19 complexity, in terms of clinical outcomes, severity, and response to therapy suggested the use of multifactorial strategies, characteristic of the network medicine, to approach the study of the pathobiology. Proteomics and interactomics especially allow to generate datasets that, reduced and represented in the forms of networks, can be analyzed with the tools of systems biology to unveil specific pathways central to virus-human host interaction. Moreover, artificial intelligence tools can be implemented for the identification of druggable targets and drug repurposing. In this review article, we provide an overview of the results obtained so far, from a systems biology perspective, in the understanding of COVID-19 pathobiology and virus-host interactions, and in the development of disease classifiers and tools for drug repurposing.
    MeSH term(s) Animals ; Artificial Intelligence ; COVID-19 ; Drug Repositioning ; Host Microbial Interactions ; Humans ; Systems Biology
    Language English
    Publishing date 2022-01-22
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2701262-1
    ISSN 2218-273X ; 2218-273X
    ISSN (online) 2218-273X
    ISSN 2218-273X
    DOI 10.3390/biom12020188
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Mycobacterial and Human Nitrobindins: Structure and Function.

    De Simone, Giovanna / di Masi, Alessandra / Vita, Gian Marco / Polticelli, Fabio / Pesce, Alessandra / Nardini, Marco / Bolognesi, Martino / Ciaccio, Chiara / Coletta, Massimo / Turilli, Emily Samuela / Fasano, Mauro / Tognaccini, Lorenzo / Smulevich, Giulietta / Abbruzzetti, Stefania / Viappiani, Cristiano / Bruno, Stefano / Ascenzi, Paolo

    Antioxidants & redox signaling

    2020  Volume 33, Issue 4, Page(s) 229–246

    Abstract: Aims: ...

    Abstract Aims:
    MeSH term(s) Bacterial Proteins/chemistry ; Bacterial Proteins/metabolism ; Heme/chemistry ; Heme/metabolism ; Humans ; Models, Molecular ; Mycobacterium ; Protein Binding ; Protein Conformation ; Protein Interaction Domains and Motifs ; Recombinant Proteins ; Salivary Proteins and Peptides/chemistry ; Salivary Proteins and Peptides/metabolism ; Structure-Activity Relationship
    Chemical Substances Bacterial Proteins ; Recombinant Proteins ; Salivary Proteins and Peptides ; nitrophorin ; Heme (42VZT0U6YR)
    Language English
    Publishing date 2020-04-16
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 1483836-9
    ISSN 1557-7716 ; 1523-0864
    ISSN (online) 1557-7716
    ISSN 1523-0864
    DOI 10.1089/ars.2019.7874
    Database MEDical Literature Analysis and Retrieval System OnLINE

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