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  1. Article: RETRACTED: Ye et al. Drug Resistance and Molecular Characteristics of Carbapenem-Resistant OXA-48-Producing

    Ye, Min / Liu, Lei / Liu, Bin / Zhou, Xiangdong / Li, Qi

    Microorganisms

    2024  Volume 12, Issue 4

    Abstract: The author retracts the article, 'Drug Resistance and Molecular Characteristics of Car-bapenem-Resistant OXA-48- ... ...

    Abstract The author retracts the article, 'Drug Resistance and Molecular Characteristics of Car-bapenem-Resistant OXA-48-Producing
    Language English
    Publishing date 2024-03-26
    Publishing country Switzerland
    Document type Retraction of Publication
    ZDB-ID 2720891-6
    ISSN 2076-2607
    ISSN 2076-2607
    DOI 10.3390/microorganisms12040661
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Towards quantum simulation of Sachdev-Ye-Kitaev model.

    Cao, Ye / Zhou, Yi-Neng / Shi, Ting-Ting / Zhang, Wei

    Science bulletin

    2020  Volume 65, Issue 14, Page(s) 1170–1176

    Abstract: We study a simplified version of the Sachdev-Ye-Kitaev (SYK) model with real interactions by exact ...

    Abstract We study a simplified version of the Sachdev-Ye-Kitaev (SYK) model with real interactions by exact diagonalization. Instead of satisfying a continuous Gaussian distribution, the interaction strengths are assumed to be chosen from discrete values with a finite separation. A quantum phase transition from a chaotic state to an integrable state is observed by increasing the discrete separation. Below the critical value, the discrete model can well reproduce various physical quantities of the original SYK model, including the volume law of the ground-state entanglement, level distribution, thermodynamic entropy, and out-of-time-order correlation (OTOC) functions. For systems of size up to N=20, we find that the transition point increases with system size, indicating that a relatively weak randomness of interaction can stabilize the chaotic phase. Our findings significantly relax the stringent conditions for the realization of SYK model, and can reduce the complexity of various experimental proposals down to realistic ranges.
    Language English
    Publishing date 2020-03-27
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 2816140-3
    ISSN 2095-9281 ; 2095-9273
    ISSN (online) 2095-9281
    ISSN 2095-9273
    DOI 10.1016/j.scib.2020.03.037
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Correction: Ye et al. Evaluation of the Brewing Characteristics, Digestion Profiles, and Neuroprotective Effects of Two Typical Se-Enriched Green Teas.

    Ye, Yuanyuan / He, Jiangling / He, Zhijun / Zhang, Na / Liu, Xiaoqing / Zhou, Jiaojiao / Cheng, Shuiyuan / Cai, Jie

    Foods (Basel, Switzerland)

    2023  Volume 12, Issue 6

    Abstract: The authors wish to make the following corrections to their published paper [ ... ]. ...

    Abstract The authors wish to make the following corrections to their published paper [...].
    Language English
    Publishing date 2023-03-22
    Publishing country Switzerland
    Document type Published Erratum
    ZDB-ID 2704223-6
    ISSN 2304-8158
    ISSN 2304-8158
    DOI 10.3390/foods12061339
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Mechanism of Nicotiflorin in San-Ye-Qing rhizome for anti-inflammatory effect in ulcerative colitis.

    Ruan, Yun / Zhu, Xiaolin / Shen, Jianbo / Chen, Hao / Zhou, Guoxiong

    Phytomedicine : international journal of phytotherapy and phytopharmacology

    2024  Volume 129, Page(s) 155564

    Abstract: ... elucidation of drug action mechanism, and disease mechanism. San-Ye-Qing (SYQ), is an ancient herbal medicine ...

    Abstract Background: The incidence of ulcerative colitis (UC) is on the rise globally and the development of drugs targeting UC is urgent. Finding the target of action of natural products is important for drug discovery, elucidation of drug action mechanism, and disease mechanism. San-Ye-Qing (SYQ), is an ancient herbal medicine, but whether the powder of its rhizome has pharmacological effects against UC and its mechanism of action are not clear.
    Purpose: To evaluate the therapeutic effectiveness of rhizome powder of SYQ in treating UC, and conduct an isolation and characterization of the chemical constituents of the powder. Further, screen the most potent compounds among them and determine the potential mechanism for treating UC.
    Methods: In vivo, the therapeutic effect of SYQ's rhizome powder on UC was assessed by mice's body weight, DAI score, colon length, tissue MPO activity, serum inflammatory markers, etc. Additionally, HPLC was used to isolate and identify the specific chemical components of SYQ's rhizome powder. Then, the most effective compounds and their therapeutic targets were analysed and screened in SYQ rhizome powder using network pharmacology, combined with CCK-8 assay, NO release assay and molecular docking assay, in conjunction with CETSA, DARTS, SPR and enzyme activity assay. Finally, the biological effects of the key compound on the targets were validated using Western blot and ELISA.
    Results: In vivo, SYQ rhizome powder effectively restored mice's body weight, lowered DAI and pathological score, downregulated the expression of inflammatory biomarkers, and restored colon length, as well as the colonic epithelial and mucus barriers. Afterward, 9 compounds were isolated and identified from the powder of the rhizomes of SYQ by HPLC. Nicotiflorin is the primary compound in SYQ with the highest concentration. According to both CCK-8 and NO release tests, Nicotiflorin is also the most efficacious compound. Combined with network pharmacological prediction, molecular docking analysis, CETSA, DARTS, SPR and enzyme activity assay, Nicotiflorin may ultimately suppress inflammation by targeting p65 and inhibiting the NF-κB pathway, thereby attenuating the activation of NLRP3 inflammasome. To verify this conclusion, Western blot and ELISA experiments were conducted.
    Conclusions: Our results suggest that the extract from SYQ rhizomes has therapeutic properties for UC. Its active ingredient Nicotiflorin exerted potent anti-UC effects by binding to p65 and inhibiting the activation of NF-κB and NLRP3 inflammasomes.
    Language English
    Publishing date 2024-03-22
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 1205240-1
    ISSN 1618-095X ; 0944-7113
    ISSN (online) 1618-095X
    ISSN 0944-7113
    DOI 10.1016/j.phymed.2024.155564
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Book ; Online: Towards quantum simulation of Sachdev-Ye-Kitaev model

    Cao, Ye / Zhou, Yi-Neng / Shi, Ting-Ting / Zhang, Wei

    2020  

    Abstract: We study a simplified version of the Sachdev-Ye-Kitaev (SYK) model with real interactions by exact ...

    Abstract We study a simplified version of the Sachdev-Ye-Kitaev (SYK) model with real interactions by exact diagonalization. Instead of satisfying a continuous Gaussian distribution, the interaction strengths are assumed to be chosen from discrete values with a finite separation. A quantum phase transition from a chaotic state to an integrable state is observed by increasing the discrete separation. Below the critical value, the discrete model can well reproduce various physical quantities of the original SYK model, including the volume law of the ground-state entanglement, level distribution, thermodynamic entropy, and out-of-time-order correlation (OTOC) functions. For systems of size up to $N=20$, we find that the transition point increases with system size, indicating that a relatively weak randomness of interaction can stabilize the chaotic phase. Our findings significantly relax the stringent conditions for the realization of SYK model, and can reduce the complexity of various experimental proposals down to realistic ranges.

    Comment: 7 pages, 5 figures
    Keywords Condensed Matter - Disordered Systems and Neural Networks ; Condensed Matter - Quantum Gases ; Quantum Physics
    Subject code 612
    Publishing date 2020-03-03
    Publishing country us
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  6. Article ; Online: Underlying Mechanism of Traditional Herbal Formula Chuang-Ling-Ye in the Treatment of Diabetic Foot Ulcer through Network Pharmacology and Molecular Docking.

    Geng, Jinyuan / Zhou, Guowei / Guo, Song / Ma, Chaoqun / Ma, Jiangfeng

    Current pharmaceutical design

    2024  

    Abstract: Background: Chuang-Ling-Ye (CLY) has been clinically proven to be an effective Chinese medicine ...

    Abstract Background: Chuang-Ling-Ye (CLY) has been clinically proven to be an effective Chinese medicine for the treatment of diabetic foot ulcers (DFU).
    Objectives: This study aimed to investigate the possible mechanism of CLY in relation to DFU using network pharmacology and molecular docking.
    Materials and methods: Firstly, relevant targets of CLY against DFU were obtained from TCMSP, Swiss Target Prediction database and GEO database. Then, topological analysis was employed by Cytoscape to screen the top 6 core active ingredients and the top 8 hub targets. Furthermore, the OmicShare Tools were applied for gene ontology (GO) functional enrichment analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) signaling pathway enrichment analysis. Finally, the results of network pharmacology were verified by molecular docking method.
    Results: CLY has 61 active compounds and 361 targets after de-duplication, and the top 8 hub targets were EGFR, TP53, CCND1, IL-1B, CREBBP, AR, PTGS2 and PGR. GO enrichment analysis is mainly related to signal transducer activity, receptor activity, and molecular transducer activity. KEGG pathway analysis indicated that these shared targets were primarily focused on AGE-RAGE signaling pathway in diabetic complications, HIF-1 signaling pathway, IL-17 signaling pathway, and JAK-STAT signaling pathway. Molecular docking results showed that physciondiglucoside, 2-cinnamoyl-glucose and kinobeon A were well bound with EGFR, IL-1B, AR and PTGS2.
    Conclusion: This study demonstrated that CLY has anti-oxidative stress and anti-inflammatory effects in the treatment of DFU through various constituents, multiple targets, and multiple pathways, which provides a valuable point of reference for future investigations on CLY.
    Language English
    Publishing date 2024-02-09
    Publishing country United Arab Emirates
    Document type Journal Article
    ZDB-ID 1304236-1
    ISSN 1873-4286 ; 1381-6128
    ISSN (online) 1873-4286
    ISSN 1381-6128
    DOI 10.2174/0113816128287155240122121553
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Correction for Ye et al., "Kaposi's Sarcoma-Associated Herpesvirus Induces Rapid Release of Angiopoietin-2 from Endothelial Cells".

    Ye, Feng-Chun / Zhou, Fu-Chun / Nithianantham, Stanley / Chandran, Bala / Yu, Xiao-Lan / Weinberg, Aaron / Gao, Shou-Jiang

    Journal of virology

    2020  Volume 94, Issue 14

    Language English
    Publishing date 2020-07-01
    Publishing country United States
    Document type Journal Article ; Published Erratum
    ZDB-ID 80174-4
    ISSN 1098-5514 ; 0022-538X
    ISSN (online) 1098-5514
    ISSN 0022-538X
    DOI 10.1128/JVI.00596-20
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article: Erratum for Ye et al., "Reduced Virulence and Enhanced Host Adaption during Antibiotics Therapy: a Story of a Within-Host Carbapenem-Resistant Klebsiella pneumoniae Sequence Type 11 Evolution in a Patient with a Serious Scrotal Abscess".

    Ye, Meiping / Liao, Chunjie / Shang, Mengya / Zou, Danyang / Feng, Xin / Lu, Xinying / Zhang, Yixin / Yan, Jingmin / Hu, Zhixiang / Xu, Xiaogang / Jiang, Jianping / Zhou, Pingyu

    mSystems

    2022  Volume 7, Issue 4, Page(s) e0054522

    Language English
    Publishing date 2022-06-23
    Publishing country United States
    Document type Journal Article ; Published Erratum
    ISSN 2379-5077
    ISSN 2379-5077
    DOI 10.1128/msystems.00545-22
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: The validity of Pelophylax chosenicus (Okada, 1931) and P. hubeiensis (Fei & Ye, 1982) (Amphibia, Ranidae)

    Zhou, Sheng-Bo / Zhang, Qiu-Yi / Hu, Zi-Qiang / Xia, Zu-Yao / Miao, Qing / Guan, Ping / Shi, Jing-Song

    Herpetozoa. 2023 June 21, v. 36 p.143-152

    2023  

    Abstract: ... hubeiensis (Fei & Ye, 1982) were described chronologically from East Asia. The three species have similar ...

    Abstract AbstractPelophylax plancyi (Lataste, 1880), Pelophylax chosenicus (Okada, 1931) and Pelophylax hubeiensis (Fei & Ye, 1982) were described chronologically from East Asia. The three species have similar morphological and molecular characteristics, but the taxonomic relationships amongst them have long been ambiguous. To deal with this taxonomic issue, we examined newly-obtained topotypic specimens of P. plancyi, P. chosenicus and P. hubeiensis for morphological comparison. Furthermore, we investigated the phylogeny of pond frogs in Eurasia by Bayesian Inference and Maximum Likelihood analyses of a fragment consisting of mitochondrial DNA gene 16s and provided a molecular phylogeny of the genus Pelophylax. There were no morphological and molecular differences between P. plancyi and P. chosenicus, but both morphological and molecular differences between P. hubeiensis and P. plancyi. Hence, we conclude that P. chosenicus is a junior synonym of P. plancyi and P. hubeiensis is a separate species from P. plancyi.
    Keywords Bayesian theory ; Pelophylax ; genes ; mitochondrial DNA ; phylogeny ; statistical analysis ; East Asia ; Eurasia ; amphibians ; morphology ; synonym ; taxonomy
    Language English
    Dates of publication 2023-0621
    Size p. 143-152.
    Publishing place Pensoft Publishers
    Document type Article ; Online
    ZDB-ID 2474932-1
    ISSN 2682-955X
    ISSN 2682-955X
    DOI 10.3897/herpetozoa.36.e100072
    Database NAL-Catalogue (AGRICOLA)

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  10. Article ; Online: Contralateral Suppression at Adrenal Venous Sampling Is Associated with Renal Impairment Following Adrenalectomy for Unilateral Primary Aldosteronism (Endocrinol Metab 2021;36:875-84, Ye Seul Yang et al.).

    Tan, Zhimin / He, Qiyu / Zhou, Liang

    Endocrinology and metabolism (Seoul, Korea)

    2022  

    Language English
    Publishing date 2022-11-25
    Publishing country Korea (South)
    Document type Journal Article
    ZDB-ID 2802452-7
    ISSN 2093-5978 ; 2093-5978
    ISSN (online) 2093-5978
    ISSN 2093-5978
    DOI 10.3803/EnM.2022.1606
    Database MEDical Literature Analysis and Retrieval System OnLINE

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