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  1. Article ; Online: Comparison between using hepatocellular carcinoma (HCC) risk scores and the HCC national guideline to identify high-risk chronic hepatitis B patients for HCC surveillance in Thailand.

    Rattananukrom, Chitchai / Kitiyakara, Taya

    JGH open : an open access journal of gastroenterology and hepatology

    2022  Volume 6, Issue 6, Page(s) 408–420

    Abstract: Background and aim: Hepatocellular carcinoma (HCC) surveillance in hepatitis B virus (HBV) patients is currently based on age/sex/cirrhosis, uses ultrasound abdomen every 6-12 months, and is a resource burden. HCC risk scores have been developed to ... ...

    Abstract Background and aim: Hepatocellular carcinoma (HCC) surveillance in hepatitis B virus (HBV) patients is currently based on age/sex/cirrhosis, uses ultrasound abdomen every 6-12 months, and is a resource burden. HCC risk scores have been developed to classify HCC risk for surveillance. The number of HBV patients needing surveillance when HCC risk scores are used may be different from the current recommendation with implications on the resources needed for HCC surveillance.
    Methods: HBV patients from the liver clinic were included and classified as non-cirrhotic/cirrhotic and untreated/treated for analysis. Each subgroup was analyzed using REACH-B, CU-HCC, LSM-HCC, GAG-HCC, and mPAGE-B risk scores as appropriate. The change in the number of patients needing HCC surveillance using the above risk scores was calculated.
    Results: Seven-hundred and thirteen HBV patients were included, of whom 361 (50.6%) were male with mean age 55.43 years, and 76 (10.7%) had cirrhosis. In the untreated, non-cirrhotic subgroup, the percentage change of patients needing HCC surveillance was -69.5, -58.9, -58.8, and -54.1% when GAG-HCC, LSM-HCC, CU-HCC, and REACH-B were used compared to traditional criteria, respectively. In the treated, non-cirrhotic subgroup, the percentage change of patients needing HCC surveillance decreased by -80, -75.2, -75.2, and -2.8% when GAG-HCC, CU-HCC, REACH-B, and mPAGE-B were used, respectively. For the cirrhotic group, HCC risk scores did not make much difference.
    Conclusion: The use of HCC risk scores in non-cirrhotic HBV patients reduced the number of patients needing surveillance greatly. HBV cirrhotic patients should have HCC surveillance without the need for risk score calculation. Patients with a family history of HCC should undergo surveillance until proven unnecessary in prospective trials.
    Language English
    Publishing date 2022-05-19
    Publishing country Australia
    Document type Journal Article
    ISSN 2397-9070
    ISSN (online) 2397-9070
    DOI 10.1002/jgh3.12753
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Incidence of

    Srisuwarn, Praopilad / Sutharattanapong, Napun / Disthabanchong, Sinee / Kantachuvesiri, Surasak / Kitiyakara, Chagriya / Phakdeekitcharoen, Bunyong / Ingsathit, Atiporn / Sumethkul, Vasant

    Transplant international : official journal of the European Society for Organ Transplantation

    2024  Volume 37, Page(s) 11614

    Abstract: Kidney transplant recipients (KTRs) are at increased risk of ... ...

    Abstract Kidney transplant recipients (KTRs) are at increased risk of developing
    MeSH term(s) Adult ; Humans ; Male ; Female ; Kidney Transplantation/adverse effects ; Thailand/epidemiology ; Incidence ; Retrospective Studies ; Population Control ; Neoplasms/epidemiology ; Neoplasms/etiology ; Skin Neoplasms/epidemiology ; Risk Factors ; Transplant Recipients
    Language English
    Publishing date 2024-02-26
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 639435-8
    ISSN 1432-2277 ; 0934-0874
    ISSN (online) 1432-2277
    ISSN 0934-0874
    DOI 10.3389/ti.2024.11614
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Prognostic significance of serum cystatin c concentrations in renal transplant recipients: 5-year follow-up.

    Leach, T D / Kitiyakara, C / Price, C P / Stevens, J M / Newman, D J

    Transplantation proceedings

    2002  Volume 34, Issue 4, Page(s) 1152–1158

    MeSH term(s) Adult ; Aged ; Biomarkers/blood ; Creatinine/metabolism ; Cystatin C ; Cystatins/blood ; Cysteine Proteinase Inhibitors/blood ; Female ; Glomerular Filtration Rate ; Humans ; Kidney Diseases/classification ; Kidney Diseases/surgery ; Kidney Transplantation/physiology ; Length of Stay ; Male ; Middle Aged ; Postoperative Complications/classification ; Postoperative Period ; Predictive Value of Tests ; Prognosis ; Regression Analysis ; Renal Replacement Therapy ; Technetium Tc 99m Pentetate ; Time Factors ; Treatment Outcome ; Ureteral Obstruction/epidemiology
    Chemical Substances Biomarkers ; CST3 protein, human ; Cystatin C ; Cystatins ; Cysteine Proteinase Inhibitors ; Creatinine (AYI8EX34EU) ; Technetium Tc 99m Pentetate (VW78417PU1)
    Language English
    Publishing date 2002-06
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 82046-5
    ISSN 1873-2623 ; 0041-1345
    ISSN (online) 1873-2623
    ISSN 0041-1345
    DOI 10.1016/s0041-1345(02)02818-x
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: An Increase in Vascular Stiffness is Positively Associated with Mitochondrial Bioenergetics Impairment of Peripheral Blood Mononuclear Cells in the Elderly Population.

    Attachaipanich, Tanawat / Sriwichaiin, Sirawit / Apaijai, Nattayaporn / Kerdphoo, Sasiwan / Thongmung, Nisakron / Vathesatogkit, Prin / Sritara, Piyamitr / Chattipakorn, Nipon / Kitiyakara, Chagriya / Chattipakorn, Siriporn C

    The journals of gerontology. Series A, Biological sciences and medical sciences

    2024  

    Abstract: The cardio-ankle vascular index (CAVI) is a non-invasive parameter reflecting vascular stiffness. CAVI correlates with the burden of atherosclerosis and future cardiovascular events. Mitochondria of peripheral blood mononuclear cells (PBMCs) have been ... ...

    Abstract The cardio-ankle vascular index (CAVI) is a non-invasive parameter reflecting vascular stiffness. CAVI correlates with the burden of atherosclerosis and future cardiovascular events. Mitochondria of peripheral blood mononuclear cells (PBMCs) have been identified as a non-invasive source for assessing systemic mitochondrial bioenergetics. This study aimed to investigate the relationship between CAVI values and mitochondrial bioenergetics of PBMCs in the elderly population. This cross-sectional study enrolled participants from the Electricity Generating Authority of Thailand (EGAT) between 2017 and 2018. 1640 participants with an ankle-brachial index greater than 0.9 were included in this study. All participants were stratified into three groups based on their CAVI values as high (CAVI ≥9), moderate (9 >CAVI ≥8), and low (CAVI <8), in which each group comprised 702, 507 and 431 participants, respectively. The extracellular flux analyzer was used to measure mitochondrial respiration of isolated PBMCs. The mean age of the participants was 67.9 years, and 69.6% of them were male. After adjusted with potential confounders including age, sex, smoking status, body mass index, diabetes, dyslipidemia, hypertension, and creatinine clearance, participants with high CAVI values were independently associated with impaired mitochondrial bioenergetics, including decreased basal respiration, maximal respiration, and spare respiratory capacity, as well as increased mitochondrial reactive oxygen species. This study demonstrated that CAVI measurement reflects the underlying impairment of cellular mitochondrial bioenergetics in PBMCs. Further longitudinal studies are necessary to establish both a causal relationship between CAVI measurement and underlying cellular dysfunction.
    Language English
    Publishing date 2024-04-03
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1223643-3
    ISSN 1758-535X ; 1079-5006
    ISSN (online) 1758-535X
    ISSN 1079-5006
    DOI 10.1093/gerona/glae095
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Ultrasensitive Detection of MicroRNA in Human Saliva via Rolling Circle Amplification Using a DNA-Decorated Graphene Oxide Sensor.

    Pitikultham, Piyawat / Putnin, Thitirat / Pimalai, Dechnarong / Sathirapongsasuti, Nuankanya / Kitiyakara, Chagriya / Jiang, Qiao / Ding, Baoquan / Japrung, Deanpen

    ACS omega

    2023  Volume 8, Issue 17, Page(s) 15266–15275

    Abstract: MicroRNAs (miRNAs) are a family of conserved small noncoding RNAs whose expression is associated with many diseases, including cancer. Salivary miRNAs are gaining popularity as noninvasive diagnostic biomarkers for cancer and other systemic disorders, ... ...

    Abstract MicroRNAs (miRNAs) are a family of conserved small noncoding RNAs whose expression is associated with many diseases, including cancer. Salivary miRNAs are gaining popularity as noninvasive diagnostic biomarkers for cancer and other systemic disorders, but their use is limited by their low abundance and complicated detection procedure. Herein, we present a novel self-assembly approach based on rolling circle amplification (RCA) and graphene oxide (GO) for the ultrasensitive detection of miRNA21 and miRNA16 (miRNA oral cancer biomarkers in human saliva). First, target miRNA hybridizes with the RCA template. In the presence of DNA polymerase, the RCA reaction is induced and sequences matching the template are generated. Then, a nicking enzyme cuts the long ssDNA product into tiny pieces to obtain the amplified products. The DNA-decorated GO sensor was fabricated by preabsorbing the ssDNA fluorescence-labeled probe on the GO surface, resulting in fluorescence quenching. The DNA-decorated GO sensor could detect the amplified product via the self-assembly of dsDNA, leading to the desorption and recovery of the fluorescence-labeled probe. Under optimal conditions, the proposed system exhibited ultrasensitive detection; the detection limits of miRNA16 and miRNA21 were 8.81 and 3.85 fM, respectively. It showed a wide range of detection between 10 fM and 100 pM for miRNA16 and between 10 fM and 1 nM for miRNA16. It demonstrated high selectivity, distinguishing between 1- and 3-mismatch nucleotides in target miRNA. Overall, our proposed DNA-decorated GO sensor can accurately detect the salivary miRNAs and may potentially be used for the diagnosis and screening of early-stage oral cancer.
    Language English
    Publishing date 2023-04-17
    Publishing country United States
    Document type Journal Article
    ISSN 2470-1343
    ISSN (online) 2470-1343
    DOI 10.1021/acsomega.3c00411
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Correction: GC × GC-TOFMS metabolomics analysis identifies elevated levels of plasma sugars and sugar alcohols in diabetic mellitus patients with kidney failure.

    Duangkumpha, Kassaporn / Jariyasopit, Narumol / Wanichthanarak, Kwanjeera / Dhakal, Esha / Wisanpitayakorn, Pattipong / Thotsiri, Sansanee / Sirivatanauksorn, Yongyut / Kitiyakara, Chagriya / Sathirapongsasuti, Nuankanya / Khoomrung, Sakda

    The Journal of biological chemistry

    2023  Volume 299, Issue 12, Page(s) 105422

    Language English
    Publishing date 2023-11-07
    Publishing country United States
    Document type Published Erratum
    ZDB-ID 2997-x
    ISSN 1083-351X ; 0021-9258
    ISSN (online) 1083-351X
    ISSN 0021-9258
    DOI 10.1016/j.jbc.2023.105422
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Urinary epidermal growth factor, monocyte chemoattractant protein-1 or their ratio as predictors for rapid loss of renal function in type 2 diabetic patients with diabetic kidney disease.

    Satirapoj, Bancha / Dispan, Rattanawan / Radinahamed, Piyanuch / Kitiyakara, Chagriya

    BMC nephrology

    2018  Volume 19, Issue 1, Page(s) 246

    Abstract: Background: Increased monocyte chemoattractant protein-1 (MCP-1) and decreased epidermal growth factor (EGF) are promising biomarkers to predict progressive decline in kidney function in non-diabetic kidney diseases. We aimed to evaluate the performance ...

    Abstract Background: Increased monocyte chemoattractant protein-1 (MCP-1) and decreased epidermal growth factor (EGF) are promising biomarkers to predict progressive decline in kidney function in non-diabetic kidney diseases. We aimed to evaluate the performance of urinary EGF, MCP-1 or their ratio in predicting rapid decline of GFR in a cohort of Type 2 diabetic patients (T2DM) with diabetic kidney disease (DKD).
    Methods: T2DM patients (n = 83) with DKD at high risk for renal progression were followed up prospectively. The baseline urine values of MCP-1 to creatinine ratio (UMCP-1), EGF to creatinine ratio (UEGF), EGF to MCP-1 ratio (UEGF/MCP-1) and albumin to creatinine ratio (UACR) were measured. The primary outcome was a decline in estimated glomerular filtration rate (GFR) of ≥25% yearly from baseline.
    Results: During follow-up time of 23 months, patients with rapid decline in estimated GFR of ≥25% yearly from baseline had significantly higher baseline levels of UMCP-1, and UACR and lower UEGF and UEGF/MCP-1 ratio. All renal biomarkers predicted primary outcomes with ROC (95%CI) for UMCP-1=0.73 (0.62-0.84), UEGF=0.68 (0.57-0.80), UEGF/MCP-1=0.74 (0.63-0.85), and UACR =0.84 (0.75-0.93). By univariate analysis, blood pressure, GFR, UACR, UMCP-1, UEGF, and UEGF/MCP-1 were associated with rapid decline GFR. By multivariate analysis, UACR, systolic blood pressure, and UMCP-1 or UEGF/MCP-1 were independently associated with rapid GFR decline.
    Conclusions: UMCP-1 or UEGF/MCP-1 ratio were associated with rapid renal progression independent from conventional risk factors in DKD.
    MeSH term(s) Aged ; Albuminuria/urine ; Biomarkers/urine ; Cardiovascular Diseases ; Chemokine CCL2/urine ; Creatinine/urine ; Diabetes Mellitus, Type 2/complications ; Diabetic Angiopathies ; Diabetic Nephropathies/diagnosis ; Diabetic Nephropathies/physiopathology ; Diabetic Nephropathies/urine ; Disease Progression ; Epidermal Growth Factor/urine ; Female ; Glomerular Filtration Rate ; Humans ; Male ; Middle Aged ; Prospective Studies ; Risk Factors
    Chemical Substances Biomarkers ; CCL2 protein, human ; Chemokine CCL2 ; Epidermal Growth Factor (62229-50-9) ; Creatinine (AYI8EX34EU)
    Language English
    Publishing date 2018-09-21
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2041348-8
    ISSN 1471-2369 ; 1471-2369
    ISSN (online) 1471-2369
    ISSN 1471-2369
    DOI 10.1186/s12882-018-1043-x
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  8. Article ; Online: Predicting treatment response and clinicopathological findings in lupus nephritis with urine epidermal growth factor, monocyte chemoattractant protein-1 or their ratios.

    Ngamjanyaporn, Pintip / Worawichawong, Suchin / Pisitkun, Prapaporn / Khiewngam, Khantong / Kantachuvesiri, Surasak / Nongnuch, Arkom / Assanatham, Montira / Sathirapongsasuti, Nuankanya / Kitiyakara, Chagriya

    PloS one

    2022  Volume 17, Issue 3, Page(s) e0263778

    Abstract: Introduction: There is a need for sensitive and specific biomarkers to predict kidney damage and therapeutic response in lupus nephritis (LN). Monocyte chemoattractant protein-1 (MCP-1) and epidermal growth factor (EGF) are cytokines with divergent ... ...

    Abstract Introduction: There is a need for sensitive and specific biomarkers to predict kidney damage and therapeutic response in lupus nephritis (LN). Monocyte chemoattractant protein-1 (MCP-1) and epidermal growth factor (EGF) are cytokines with divergent roles. EGF or EGF/MCP1 ratio have been shown to correlate with prognosis in primary glomerulonephritis, but there is limited information in lupus nephritis (LN). This study evaluated the roles of MCP-1, EGF or their ratio as biomarkers of histopathology and response to treatment in LN.
    Methods: This was a cross-sectional and observational study. Baseline urine MCP-1 and EGF levels in systemic lupus erythematosus (SLE) patients and controls (total n = 101) were compared, and levels were correlated with clinicopathological findings and subsequent response to treatment.
    Results: MCP-1 was higher in active LN (n = 69) compared to other SLE groups and controls, whereas EGF was not different. MCP-1 correlated with disease activity (proteinuria, renal SLEDAI, classes III/IV/V, and high activity index.) By contrast, EGF correlated with eGFR, but not with proteinuria, activity index, or class III/IV/V. MCP-1 was higher, and EGF was lower in high chronicity index. EGF/MCP-1 decreased with greater clinicopathological severity. In a subgroup with proliferative LN who completed six months of induction therapy (n = 41), EGF at baseline was lower in non-responders compared to responders, whereas MCP-1 was similar. By multivariable analysis, baseline EGF was independently associated with subsequent treatment response. Area under the curve for EGF to predict response was 0.80 (0.66-0.95). EGF ≥ 65.6 ng/ mgCr demonstrated 85% sensitivity and 71% specificity for response. EGF/MCP-1 did not improve the prediction for response compared to EGF alone.
    Conclusion: MCP-1 increased with disease activity, whereas EGF decreased with low GFR and chronic damage. Urine EGF may be a promising biomarker to predict therapeutic response in LN. EGF/MCP-1 did not improve the prediction of response.
    MeSH term(s) Biomarkers/urine ; Chemokine CCL2/urine ; Cross-Sectional Studies ; Epidermal Growth Factor/urine ; Female ; Humans ; Lupus Erythematosus, Systemic/drug therapy ; Lupus Nephritis/pathology ; Male ; Proteinuria
    Chemical Substances Biomarkers ; Chemokine CCL2 ; Epidermal Growth Factor (62229-50-9)
    Language English
    Publishing date 2022-03-10
    Publishing country United States
    Document type Journal Article ; Observational Study ; Research Support, Non-U.S. Gov't
    ZDB-ID 2267670-3
    ISSN 1932-6203 ; 1932-6203
    ISSN (online) 1932-6203
    ISSN 1932-6203
    DOI 10.1371/journal.pone.0263778
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: GC × GC-TOFMS metabolomics analysis identifies elevated levels of plasma sugars and sugar alcohols in diabetic mellitus patients with kidney failure.

    Duangkumpha, Kassaporn / Jariyasopit, Narumol / Wanichthanarak, Kwanjeera / Dhakal, Esha / Wisanpitayakorn, Pattipong / Thotsiri, Sansanee / Sirivatanauksorn, Yongyut / Kitiyakara, Chagriya / Sathirapongsasuti, Nuankanya / Khoomrung, Sakda

    The Journal of biological chemistry

    2022  Volume 298, Issue 10, Page(s) 102445

    Abstract: Two dimensional GC (GC × GC)-time-of-flight mass spectrometry (TOFMS) has been used to improve accurate metabolite identification in the chemical industry, but this method has not been applied as readily in biomedical research. Here, we evaluated and ... ...

    Abstract Two dimensional GC (GC × GC)-time-of-flight mass spectrometry (TOFMS) has been used to improve accurate metabolite identification in the chemical industry, but this method has not been applied as readily in biomedical research. Here, we evaluated and validated the performance of high resolution GC × GC-TOFMS against that of GC-TOFMS for metabolomics analysis of two different plasma matrices, from healthy controls (CON) and diabetes mellitus (DM) patients with kidney failure (DM with KF). We found GC × GC-TOFMS outperformed traditional GC-TOFMS in terms of separation performance and metabolite coverage. Several metabolites from both the CON and DM with KF matrices, such as carbohydrates and carbohydrate-conjugate metabolites, were exclusively detected using GC × GC-TOFMS. Additionally, we applied this method to characterize significant metabolites in the DM with KF group, with focused analysis of four metabolite groups: sugars, sugar alcohols, amino acids, and free fatty acids. Our plasma metabolomics results revealed 35 significant metabolites (12 unique and 23 concentration-dependent metabolites) in the DM with KF group, as compared with those in the CON and DM groups (N = 20 for each group). Interestingly, we determined 17 of the 35 (14/17 verified with reference standards) significant metabolites identified from both the analyses were metabolites from the sugar and sugar alcohol groups, with significantly higher concentrations in the DM with KF group than in the CON and DM groups. Enrichment analysis of these 14 metabolites also revealed that alterations in galactose metabolism and the polyol pathway are related to DM with KF. Overall, our application of GC × GC-TOFMS identified key metabolites in complex plasma matrices.
    MeSH term(s) Humans ; Gas Chromatography-Mass Spectrometry/methods ; Metabolomics/methods ; Renal Insufficiency/blood ; Sugar Alcohols/blood ; Sugars/blood ; Diabetic Neuropathies/blood
    Chemical Substances Sugar Alcohols ; Sugars
    Language English
    Publishing date 2022-08-31
    Publishing country United States
    Document type Evaluation Study ; Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2997-x
    ISSN 1083-351X ; 0021-9258
    ISSN (online) 1083-351X
    ISSN 0021-9258
    DOI 10.1016/j.jbc.2022.102445
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  10. Article ; Online: CRISP: a deep learning architecture for GC × GC-TOFMS contour ROI identification, simulation and analysis in imaging metabolomics.

    Mathema, Vivek Bhakta / Duangkumpha, Kassaporn / Wanichthanarak, Kwanjeera / Jariyasopit, Narumol / Dhakal, Esha / Sathirapongsasuti, Nuankanya / Kitiyakara, Chagriya / Sirivatanauksorn, Yongyut / Khoomrung, Sakda

    Briefings in bioinformatics

    2022  Volume 23, Issue 2

    Abstract: Two-dimensional gas chromatography-time-of-flight mass spectrometry (GC × GC-TOFMS) provides a large amount of molecular information from biological samples. However, the lack of a comprehensive compound library or customizable bioinformatics tool is ... ...

    Abstract Two-dimensional gas chromatography-time-of-flight mass spectrometry (GC × GC-TOFMS) provides a large amount of molecular information from biological samples. However, the lack of a comprehensive compound library or customizable bioinformatics tool is currently a challenge in GC × GC-TOFMS data analysis. We present an open-source deep learning (DL) software called contour regions of interest (ROI) identification, simulation and untargeted metabolomics profiler (CRISP). CRISP integrates multiple customizable deep neural network architectures for assisting the semi-automated identification of ROIs, contour synthesis, resolution enhancement and classification of GC × GC-TOFMS-based contour images. The approach includes the novel aggregate feature representative contour (AFRC) construction and stacked ROIs. This generates an unbiased contour image dataset that enhances the contrasting characteristics between different test groups and can be suitable for small sample sizes. The utility of the generative models and the accuracy and efficacy of the platform were demonstrated using a dataset of GC × GC-TOFMS contour images from patients with late-stage diabetic nephropathy and healthy control groups. CRISP successfully constructed AFRC images and identified over five ROIs to create a deepstacked dataset. The high fidelity, 512 × 512-pixels generative model was trained as a generator with a Fréchet inception distance of <47.00. The trained classifier achieved an AUROC of >0.96 and a classification accuracy of >95.00% for datasets with and without column bleed. Overall, CRISP demonstrates good potential as a DL-based approach for the rapid analysis of 4-D GC × GC-TOFMS untargeted metabolite profiles by directly implementing contour images. CRISP is available at https://github.com/vivekmathema/GCxGC-CRISP.
    MeSH term(s) Deep Learning ; Diagnostic Imaging ; Gas Chromatography-Mass Spectrometry/methods ; Humans ; Metabolomics/methods ; Software
    Language English
    Publishing date 2022-01-12
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2068142-2
    ISSN 1477-4054 ; 1467-5463
    ISSN (online) 1477-4054
    ISSN 1467-5463
    DOI 10.1093/bib/bbab550
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