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  1. Article ; Online: Global importance of Indigenous Peoples, their lands, and knowledge systems for saving the world’s primates from extinction

    Estrada, A. / Garber, P.A. / Gouveia, S. / Fernández-Llamazares, Á. / Ascensão, F. / Fuentes, A. / Garnett, S.T. / Shaffer, C. / Bicca-Marques, J. / Fa, J.E. / Hockings, K. / Shanee, S. / Shepard, G.H. / Shanee, N. / Johnson, S. / Golden, C.D. / Cárdenas-Navarrete, A. / Levey, D.R. / Boonratana, R. /
    Dobrovolski, R. / Chaudhary, A. / Ratsimbazafy, J. / Supriatna, J. / Kone, I. / Volampeno, S.

    Science Advances

    2022  

    Abstract: ... and cultures represents our greatest chance to prevent the extinction of the world’s primates. ...

    Abstract Primates, represented by 521 species, are distributed across 91 countries primarily in the Neotropic, Afrotropic, and Indo-Malayan realms. Primates inhabit a wide range of habitats and play critical roles in sustaining healthy ecosystems that benefit human and nonhuman communities. Approximately 68% of primate species are threatened with extinction because of global pressures to convert their habitats for agricultural production and the extraction of natural resources. Here, we review the scientific literature and conduct a spatial analysis to assess the significance of Indigenous Peoples’ lands in safeguarding primate biodiversity. We found that Indigenous Peoples’ lands account for 30% of the primate range, and 71% of primate species inhabit these lands. As their range on these lands increases, primate species are less likely to be classified as threatened or have declining populations. Safeguarding Indigenous Peoples’ lands, languages, and cultures represents our greatest chance to prevent the extinction of the world’s primates.
    Keywords primates ; extinction ; indigenous people ; biodiversity conservation ; threatened species
    Language English
    Publishing date 2022-12-13T07:38:31Z
    Publisher American Association for the Advancement of Science
    Publishing country fr
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  2. Article ; Online: Chronic Kidney Disease Testing Among Primary Care Patients With Type 2 Diabetes Across 24 U.S. Health Care Organizations.

    Stempniewicz, Nikita / Vassalotti, Joseph A / Cuddeback, John K / Ciemins, Elizabeth / Storfer-Isser, Amy / Sang, Yingying / Matsushita, Kunihiro / Ballew, Shoshana H / Chang, Alex R / Levey, Andrew S / Bailey, Robert A / Fishman, Jesse / Coresh, Josef

    Diabetes care

    2021  Volume 44, Issue 9, Page(s) 2000–2009

    Abstract: ... to-creatinine ratio (uACR). We aimed to understand CKD testing among people with type 2 diabetes in the U.S ...

    Abstract Objective: Clinical guidelines for people with diabetes recommend chronic kidney disease (CKD) testing at least annually using estimated glomerular filtration rate (eGFR) and urinary albumin-to-creatinine ratio (uACR). We aimed to understand CKD testing among people with type 2 diabetes in the U.S.
    Research design and methods: Electronic health record data were analyzed from 513,165 adults with type 2 diabetes receiving primary care from 24 health care organizations and 1,164 clinical practice sites. We assessed the percentage of patients with both one or more eGFRs and one or more uACRs and each test individually in the 1, 2, and 3 years ending September 2019 by health care organization and clinical practice site. Elevated albuminuria was defined as uACR ≥30 mg/g.
    Results: The 1-year median testing rate across organizations was 51.6% for both uACR and eGFR, 89.5% for eGFR, and 52.9% for uACR. uACR testing varied (10th-90th percentile) from 44.7 to 63.3% across organizations and from 13.3 to 75.4% across sites. Over 3 years, the median testing rate for uACR across organizations was 73.7%. Overall, the prevalence of detected elevated albuminuria was 15%. The average prevalence of detected elevated albuminuria increased linearly with uACR testing rates at sites, with estimated prevalence of 6%, 15%, and 30% at uACR testing rates of 20%, 50%, and 100%, respectively.
    Conclusions: While eGFR testing rates are uniformly high among people with type 2 diabetes, testing rates for uACR are suboptimal and highly variable across and within the organizations examined. Guideline-recommended uACR testing should increase detection of CKD.
    MeSH term(s) Adult ; Albuminuria/diagnosis ; Albuminuria/epidemiology ; Creatinine ; Delivery of Health Care ; Diabetes Mellitus, Type 2/complications ; Diabetes Mellitus, Type 2/diagnosis ; Diabetes Mellitus, Type 2/epidemiology ; Glomerular Filtration Rate ; Humans ; Primary Health Care ; Renal Insufficiency, Chronic/diagnosis ; Renal Insufficiency, Chronic/epidemiology
    Chemical Substances Creatinine (AYI8EX34EU)
    Language English
    Publishing date 2021-07-07
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 441231-x
    ISSN 1935-5548 ; 0149-5992
    ISSN (online) 1935-5548
    ISSN 0149-5992
    DOI 10.2337/dc20-2715
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  3. Article ; Online: A review of the species of Anaspis (s. str.) similar to A. nigripes Brisout and A. apfelbecki Schilsky, with the description of three new species (Coleoptera: Scraptiidae).

    Levey, Brian

    Zootaxa

    2020  Volume 4778, Issue 3, Page(s) zootaxa.4778.3.4

    Abstract: Three new species are described: A. cooteri sp. n. (from China), A. curva sp. n. (from China), A. bertrami sp. n. (from Lebanon). A dichotomous key is provided to distinguish the new species from their most similar known species, namely: A. apfelbecki ... ...

    Abstract Three new species are described: A. cooteri sp. n. (from China), A. curva sp. n. (from China), A. bertrami sp. n. (from Lebanon). A dichotomous key is provided to distinguish the new species from their most similar known species, namely: A. apfelbecki Schilsky, A. emarginata Schilsky, A. graeca Schilsky, A. koenigi Schilsky, A. marseuli Csiki, A. mongolica Ermisch, A. nigripes Brisout de Barneville.
    MeSH term(s) Animal Distribution ; Animals ; Coleoptera
    Language English
    Publishing date 2020-05-15
    Publishing country New Zealand
    Document type Journal Article
    ISSN 1175-5334
    ISSN (online) 1175-5334
    DOI 10.11646/zootaxa.4778.3.4
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  4. Article ; Online: CSF proteome profiling across the Alzheimer’s disease spectrum reflects the multifactorial nature of the disease and identifies specific biomarker panels

    del Campo, Marta / Peeters, Carel F.W. / Johnson, Erik C.B. / Vermunt, Lisa / Hok-A-Hin, Yanaika S. / van Nee, Mirrelijn / Chen-Plotkin, Alice / Irwin, David J. / Hu, William T. / Lah, James J. / Seyfried, Nicholas T. / Dammer, Eric B. / Herradon, Gonzalo / Meeter, Lieke H. / van Swieten, John / Alcolea, Daniel / Lleó, Alberto / Levey, Allan I. / Lemstra, Afina W. /
    Pijnenburg, Yolande A.L. / Visser, Pieter J. / Tijms, Betty M. / van der Flier, Wiesje M. / Teunissen, Charlotte E.

    Nature Aging

    2022  Volume 2, Issue 11

    Abstract: Development of disease-modifying therapies against Alzheimer’s disease (AD) requires biomarkers ...

    Abstract Development of disease-modifying therapies against Alzheimer’s disease (AD) requires biomarkers reflecting the diverse pathological pathways specific for AD. We measured 665 proteins in 797 cerebrospinal fluid (CSF) samples from patients with mild cognitive impairment with abnormal amyloid (MCI(Aβ+): n = 50), AD-dementia (n = 230), non-AD dementias (n = 322) and cognitively unimpaired controls (n = 195) using proximity ligation-based immunoassays. Here we identified >100 CSF proteins dysregulated in MCI(Aβ+) or AD compared to controls or non-AD dementias. Proteins dysregulated in MCI(Aβ+) were primarily related to protein catabolism, energy metabolism and oxidative stress, whereas those specifically dysregulated in AD dementia were related to cell remodeling, vascular function and immune system. Classification modeling unveiled biomarker panels discriminating clinical groups with high accuracies (area under the curve (AUC): 0.85–0.99), which were translated into custom multiplex assays and validated in external and independent cohorts (AUC: 0.8–0.99). Overall, this study provides novel pathophysiological leads delineating the multifactorial nature of AD and potential biomarker tools for diagnostic settings or clinical trials.
    Keywords Life Science
    Subject code 610
    Language English
    Publishing country nl
    Document type Article ; Online
    ISSN 2662-8465
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  5. Article ; Online: Atlas of RNA editing events affecting protein expression in aged and Alzheimer’s disease human brain tissue

    Yiyi Ma / Eric B. Dammer / Daniel Felsky / Duc M. Duong / Hans-Ulrich Klein / Charles C. White / Maotian Zhou / Benjamin A. Logsdon / Cristin McCabe / Jishu Xu / Minghui Wang / Thomas S. Wingo / James J. Lah / Bin Zhang / Julie Schneider / Mariet Allen / Xue Wang / Nilüfer Ertekin-Taner / Nicholas T. Seyfried /
    Allan I. Levey / David A. Bennett / Philip L. De Jager

    Nature Communications, Vol 12, Iss 1, Pp 1-

    2021  Volume 16

    Abstract: ... provide an atlas of RNA editing events found in the aged and Alzheimer’s disease human brain tissue ...

    Abstract Resources reporting RNA editing sites from brain tissue have been published. Here, the authors provide an atlas of RNA editing events found in the aged and Alzheimer’s disease human brain tissue resulting in changes at protein level.
    Keywords Science ; Q
    Language English
    Publishing date 2021-12-01T00:00:00Z
    Publisher Nature Portfolio
    Document type Article ; Online
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  6. Article ; Online: CSF protein panels reflecting multiple pathophysiological mechanisms for early and specific diagnosis of Alzheimer’s disease.

    Del Campo, M. / Peeters, C.F.W. / Johnson, E.C.B. / Vermunt, L. / Hok-A-Hin, Y.S. / van Nee, M. / Chen-Plotkin, A. / Hu, W.T. / Lah, J.J. / Seyfried, N.T. / Herradon, G. / Meeter, L.H.H. / van Swieten, J.C. / Levey, A.I. / Lemstra, A.W. / Pijnenburg, Y.A.L. / Visser, P.J. / Tijms, B.M. / van der Flier, W.M. /
    Teunissen, C.E.

    Alzheimer's and Dementia

    2021  Volume 17, Issue S5

    Abstract: AbstractBackgroundThe development of disease-modifying therapies against Alzheimer’s disease (AD ...

    Abstract AbstractBackgroundThe development of disease-modifying therapies against Alzheimer’s disease (AD) requires biomarker panels that reflect the diverse pathological pathways specifically involved in AD. Here we aimed to identify and validate panels of cerebrospinal fluid (CSF) proteins covering different molecular pathways for early and specific diagnosis of AD.MethodWe measured 665 proteins in 797 CSF samples from patients with mild cognitive impairment with abnormal amyloid (MCI(Aβ+): n=50), AD-dementia (n=230), non-AD dementias (n=322; 123 DLB and 199 FTD) and cognitively-unimpaired controls (n=195; classical AD CSF biomarkers negative) using proximity ligation-based multiplex immunoassays. Nested and penalized linear modeling were used to identify protein differences (q<0,05) and translatable classification signatures.ResultWe detected highly dysregulated CSF proteins in MCI(Aβ+) or AD compared to controls (112 and 288 proteins respectively, lowest q:1-15 and 1-23), as well as between AD and non-AD dementias (469 proteins; lowest q:1-29). We confirmed previous findings (e.g., DDAH1, ENO2, PARK7), but we also identified novel proteins especially associated to the prodromal and/or dementia AD stages (e.g., ABL1, SCD4, ENTPD5). Proteins dysregulated in MCI(Aβ+) were primarily related to oxidative stress and energy metabolism, while those specifically dysregulated in later stages of AD dementia were related to cell remodeling, vascular function and immune system. Using penalised generalised linear modeling we identified the minimal number of markers with maximal power to discriminate clinical groups: for MCI(Aβ+) vs. controls: 10-CSF proteins, AUC:0.99 (95%CI:0.97-1); for AD vs. controls: 8-CSF proteins, AUC:0.95 (95%CI:0.92-0.99) and for AD vs. non-AD dementias: 9-CSF proteins, AUC:0.87 (95%CI:0.81-0.93). The CSF panel discriminating AD from cognitively unimpaired controls was validated in an independent external cohort (n=62, AUC:0.94). Only 3 proteins overlapped across panels, suggesting that the panels with ...
    Keywords Life Science
    Subject code 610
    Language English
    Publishing country nl
    Document type Article ; Online
    ZDB-ID 2211627-8
    ISSN 1552-5260
    ISSN 1552-5260
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  7. Article ; Online: The 2021 update of the EPA’s adverse outcome pathway database

    Holly M. Mortensen / Jonathan Senn / Trevor Levey / Phillip Langley / Antony J. Williams

    Scientific Data, Vol 8, Iss 1, Pp 1-

    2021  Volume 9

    Abstract: Measurement(s) adverse outcome pathway • gene interactions • Orthologous Gene • chemical ... gene interactions • molecular pathway • disease gene associations • SNP Technology Type(s) digital curation Machine ...

    Abstract Measurement(s) adverse outcome pathway • gene interactions • Orthologous Gene • chemical gene interactions • molecular pathway • disease gene associations • SNP Technology Type(s) digital curation Machine-accessible metadata file describing the reported data: https://doi.org/10.6084/m9.figshare.14737557
    Keywords Science ; Q
    Language English
    Publishing date 2021-07-01T00:00:00Z
    Publisher Nature Portfolio
    Document type Article ; Online
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  8. Article ; Online: Apolipoprotein E gene polymorphism, posttraumatic stress disorder, and cognitive function in older U.S. veterans: Results from the National Health and Resilience in Veterans Study.

    Averill, Lynnette A / Abdallah, Chadi G / Levey, Daniel F / Han, Shizhong / Harpaz-Rotem, Ilan / Kranzler, Henry R / Southwick, Steven M / Krystal, John H / Gelernter, Joel / Pietrzak, Robert H

    Depression and anxiety

    2019  Volume 36, Issue 9, Page(s) 834–845

    Abstract: Background: Although the ε4 allele of the apolipoprotein E (APOE) gene and posttraumatic stress disorder (PTSD) have been linked to cognitive dysfunction and dementia risk, it is unknown whether they interact to predict cognitive dysfunction.: Methods! ...

    Abstract Background: Although the ε4 allele of the apolipoprotein E (APOE) gene and posttraumatic stress disorder (PTSD) have been linked to cognitive dysfunction and dementia risk, it is unknown whether they interact to predict cognitive dysfunction.
    Methods: We analyzed data from European-American (EA) veterans who participated in the National Health and Resilience in Veterans Study (NHRVS): main sample (n = 1,386) and primary replication sample (n = 509). EAs from the Yale-Penn Study cohort (n = 948) served as a second replication sample. Multivariable analyses were conducted to evaluate the predictive effects of ε4 carrier status and PTSD on cognitive functioning, with a focus on whether PTSD moderates the effect of ε4 carrier status.
    Results: APOE ε4 allele carrier status (d = 0.15 and 0.17 in the main and primary replication NHRVS samples, respectively) and PTSD (d = 0.31 and 0.17, respectively) were independently associated with lower cognitive functioning. ε4 carriers with PTSD scored lower than those without PTSD (d = 0.68 and 1.29, respectively) with the most pronounced differences in executive function (d's = 0.75-1.50) and attention/concentration (d's = 0.62-1.33). A significant interaction was also observed in the Yale-Penn sample, with ε4 carriers with PTSD making more perseverative errors on a measure of executive function than those without PTSD (24.7% vs. 17.6%; d = 0.59).
    Conclusions: APOE ε4 allele carriers with PTSD have substantially greater cognitive difficulties than ε4 carriers without PTSD. These results underscore the importance of assessing, monitoring, and treating PTSD in trauma-affected individuals who are at genetic risk for cognitive decline and dementia.
    MeSH term(s) Alleles ; Apolipoprotein E4/genetics ; Cognition ; Cognitive Dysfunction/genetics ; Cohort Studies ; European Continental Ancestry Group/psychology ; Executive Function ; Female ; Genetic Predisposition to Disease ; Health Surveys ; Humans ; Male ; Middle Aged ; Polymorphism, Genetic ; Stress Disorders, Post-Traumatic/genetics ; Stress Disorders, Post-Traumatic/psychology ; United States/epidemiology ; Veterans/psychology
    Chemical Substances Apolipoprotein E4
    Language English
    Publishing date 2019-08-06
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 1378635-0
    ISSN 1520-6394 ; 1091-4269
    ISSN (online) 1520-6394
    ISSN 1091-4269
    DOI 10.1002/da.22912
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    Zs.A 3823: Show issues Location:
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  9. Article ; Online: Psychosocial moderators of polygenic risk for suicidal ideation: Results from a 7-year population-based, prospective cohort study of U.S. veterans.

    Na, Peter J / De Angelis, Flavio / Nichter, Brandon / Wendt, Frank R / Krystal, John H / Southwick, Steven M / Levey, Daniel F / Gelernter, Joel / Polimanti, Renato / Pietrzak, Robert H

    Molecular psychiatry

    2021  Volume 27, Issue 2, Page(s) 1068–1074

    Abstract: Polygenic risk scores (PRS) may help inform the etiology of suicidal thoughts and behaviors. In this study, we evaluated whether a suicidality PRS derived from a large genome-wide association study (GWAS) of suicidality from the UK Biobank (N = 122,935) ... ...

    Abstract Polygenic risk scores (PRS) may help inform the etiology of suicidal thoughts and behaviors. In this study, we evaluated whether a suicidality PRS derived from a large genome-wide association study (GWAS) of suicidality from the UK Biobank (N = 122,935) predicted suicidal ideation (SI) in a 7-year population-based, prospective cohort of European-American US veterans (N = 1326). Results revealed that 8.8% (n = 115) of veterans developed new-onset SI, 4.0% (n = 52) had chronic SI, 3.4% (n = 31) had remitted SI, and 83.8% (n = 1128) denied SI over the study period. Suicidality PRS
    MeSH term(s) Cohort Studies ; Genome-Wide Association Study ; Humans ; Prospective Studies ; Suicidal Ideation ; Veterans/psychology
    Language English
    Publishing date 2021-11-02
    Publishing country England
    Document type Journal Article ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 1330655-8
    ISSN 1476-5578 ; 1359-4184
    ISSN (online) 1476-5578
    ISSN 1359-4184
    DOI 10.1038/s41380-021-01352-2
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  10. Article ; Online: Multiscale causal networks identify VGF as a key regulator of Alzheimer’s disease

    Noam D. Beckmann / Wei-Jye Lin / Minghui Wang / Ariella T. Cohain / Alexander W. Charney / Pei Wang / Weiping Ma / Ying-Chih Wang / Cheng Jiang / Mickael Audrain / Phillip H. Comella / Amanda K. Fakira / Siddharth P. Hariharan / Gillian M. Belbin / Kiran Girdhar / Allan I. Levey / Nicholas T. Seyfried / Eric B. Dammer / Duc Duong /
    James J. Lah / Jean-Vianney Haure-Mirande / Ben Shackleton / Tomas Fanutza / Robert Blitzer / Eimear Kenny / Jun Zhu / Vahram Haroutunian / Pavel Katsel / Sam Gandy / Zhidong Tu / Michelle E. Ehrlich / Bin Zhang / Stephen R. Salton / Eric E. Schadt

    Nature Communications, Vol 11, Iss 1, Pp 1-

    2020  Volume 19

    Abstract: To investigate the molecular foundation of sporadic Alzheimer’s disease (AD), Beckmann et al ...

    Abstract To investigate the molecular foundation of sporadic Alzheimer’s disease (AD), Beckmann et al. constructed multiscale causal networks on a large human AD multi-omics dataset, detecting AD-associated networks and their top predicted regulator, VGF, with extensive validation in the 5xFAD mouse model.
    Keywords Science ; Q
    Language English
    Publishing date 2020-08-01T00:00:00Z
    Publisher Nature Publishing Group
    Document type Article ; Online
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