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  1. Article: EBR and JA regulate aroma substance biosynthesis in 'Ruidu Hongyu' grapevine berries by transcriptome and metabolite combined analysis.

    Li, Jiajia / Quan, Yi / Wu, Zishu / Han, Jiayu / Zhang, Ying / Javed, Hafiz Umer / Ma, Chao / Jiu, Songtao / Zhang, Caixi / Wang, Lei / Wang, Shiping

    Frontiers in plant science

    2023  Volume 14, Page(s) 1185049

    Abstract: ... floral and fruity aromas to the Muscat variety. 'Ruidu Hongyu' grapevine is one of the newly developed ... in 'Ruidu Hongyu' grapevine. According to the results, exogenous BR and JA promoted the accumulation ...

    Abstract Volatile compounds including terpenes, aldehyde, phenol, and alcohol are significantly contributed floral and fruity aromas to the Muscat variety. 'Ruidu Hongyu' grapevine is one of the newly developed grape varieties, and cultivation of this variety has been extended across China due to unique quality traits and taste. In this study, HS-SPME/GC-MS and transcriptome sequencing analysis were performed to evaluate the impact of exogenous 2,4-epibrassinolide (EBR), jasmonic acid (JA), and their signaling inhibitors brassinazole (Brz)/sodium diethyldithiocarbamate (DIECA) on the biosynthesis of aroma substances in 'Ruidu Hongyu' grapevine. According to the results, exogenous BR and JA promoted the accumulation of various aroma substances, including hexenal, 2-hexenal, nerol oxide, vanillin, hotrienol, terpineol, neral, nerol, geraniol, and geranic acid. After EBR and JA treatments, most of the genes responsible for terpene, aldehyde, and alcohol biosynthesis expressed at a higher level than the CK group. Relatively, EBR treatment could not only promote endogenous BR biosynthesis and metabolism but also elevate BR signaling transduction. JA treatment contributed to endogenous JA and MeJA accumulation, as well. Through transcriptome sequencing, a total of 3043, 903, 1470, and 607 DEGs were identified in JA vs. JD, JA vs. CK, BR vs. CK, and BR vs. Brz, respectively. There were more DEGs under both EBR and JA treatments at late fruit ripening stages. The findings of this study increase our understanding regarding aroma substances biosynthesis and endogenous BR/JA metabolism in response to exogenous EBR and JA signals.
    Language English
    Publishing date 2023-06-06
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2613694-6
    ISSN 1664-462X
    ISSN 1664-462X
    DOI 10.3389/fpls.2023.1185049
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Genome-Wide Identification of Glutathione S-Transferase and Expression Analysis in Response to Anthocyanin Transport in the Flesh of the New Teinturier Grape Germplasm 'Zhongshan-HongYu'.

    Li, Hui / Yang, Yaxin / Li, Haoran / Wang, Wu / Zheng, Huan / Tao, Jianmin

    International journal of molecular sciences

    2022  Volume 23, Issue 14

    Abstract: ... stage, we analyzed and characterized the GST family in the flesh of 'Zhongshan-HongYu' (ZS-HY) based ...

    Abstract Anthocyanins are synthesized in the endoplasmic reticulum and then transported to the vacuole in plants. Glutathione S-transferases (GSTs) are thought to play a key role in anthocyanin transport. To clarify the mechanism of GST genes in the accumulation and transport of anthocyanin in the early fruit stage, we analyzed and characterized the GST family in the flesh of 'Zhongshan-HongYu' (ZS-HY) based on the transcriptome. In this study, the 92 GST genes identified through a comprehensive bioinformatics analysis were unevenly present in all chromosomes of grapes, except chromosomes 3, 9 and 10. Through the analysis of the chromosomal location, gene structure, conserved domains, phylogenetic relationships and
    MeSH term(s) Anthocyanins/metabolism ; Gene Expression Regulation, Plant ; Glutathione Transferase/metabolism ; Phylogeny ; Plant Proteins/metabolism ; Vitis/genetics ; Vitis/metabolism
    Chemical Substances Anthocyanins ; Plant Proteins ; Glutathione Transferase (EC 2.5.1.18)
    Language English
    Publishing date 2022-07-13
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2019364-6
    ISSN 1422-0067 ; 1422-0067 ; 1661-6596
    ISSN (online) 1422-0067
    ISSN 1422-0067 ; 1661-6596
    DOI 10.3390/ijms23147717
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Genome-Wide Identification of ATP-Binding Cassette (ABC) Transporter Provides Insight to Genes Related to Anthocyanin Transportation in New Teinturier Grape Germplasm ‘ZhongShan-HongYu’

    Li, Hui / Yang, Yaxin / Wang, Qianlan / Li, Haoran / Wang, Wu / Zheng, Huan / Tao, Jianmin

    Horticulturae. 2023 Apr. 24, v. 9, no. 5

    2023  

    Abstract: ... family in ‘ZhongShan-HongYu’ (ZS-HY) berries using RNA-seq analysis. In this study, a total of 146 VvABC ...

    Abstract ATP-binding cassette (ABC) transporters are a large class of superfamily involved in a variety of biological processes with multiple functions, including phytohormone transport, heavy metal ion detoxification, and so on. Anthocyanin pigmentation in grapes is a commercially important feature of this superfamily. To elucidate the mechanisms of the VvABC gene at different stages in grape berries, we analyzed and characterized the ABC family in ‘ZhongShan-HongYu’ (ZS-HY) berries using RNA-seq analysis. In this study, a total of 146 VvABC genes were identified by comprehensive bioinformatics analysis, which outlined their gene structure, chromosomal location, conserved domains, phylogenetic relationships, and collinearity analysis. The VvABC family could be divided into eight subfamilies based on the phylogenetic analysis. Fifty-eight VvABC genes were identified from the RNA-seq data, of which 31 belong to the ABCG subfamily, 15 belong to the ABCC subfamily, 8 belong to the ABCB subfamily, 2 belong to the ABCF subfamily, and only 1 belongs to each of the ABCA and ABCD subfamilies. We used qRT-PCR to detect the expression of VvABC genes in different organs and found that it changed significantly in different organs. Phylogenetic analysis showed that genes involved in anthocyanin transport in other species were closely related to members of the ABCC subfamily. Subsequently, analysis of the promoter elements and the protein interactions of the VvABCC genes using RNA-seq was performed. This study has improved our understanding of the functions of the ABC gene family and provided a basis for the role of ABC genes in grape anthocyanin transport.
    Keywords anthocyanins ; bioinformatics ; genes ; germplasm ; grapes ; heavy metals ; phylogeny ; pigmentation ; plant hormones ; sequence analysis ; transportation
    Language English
    Dates of publication 2023-0424
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article ; Online
    ZDB-ID 2813983-5
    ISSN 2311-7524
    ISSN 2311-7524
    DOI 10.3390/horticulturae9050532
    Database NAL-Catalogue (AGRICOLA)

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  4. Article ; Online: Genome-Wide Identification of Glutathione S-Transferase and Expression Analysis in Response to Anthocyanin Transport in the Flesh of the New Teinturier Grape Germplasm ‘Zhongshan-HongYu’

    Hui Li / Yaxin Yang / Haoran Li / Wu Wang / Huan Zheng / Jianmin Tao

    International Journal of Molecular Sciences, Vol 23, Iss 14, p

    2022  Volume 7717

    Abstract: ... stage, we analyzed and characterized the GST family in the flesh of ‘Zhongshan-HongYu’ (ZS-HY) based ...

    Abstract Anthocyanins are synthesized in the endoplasmic reticulum and then transported to the vacuole in plants. Glutathione S-transferases (GSTs) are thought to play a key role in anthocyanin transport. To clarify the mechanism of GST genes in the accumulation and transport of anthocyanin in the early fruit stage, we analyzed and characterized the GST family in the flesh of ‘Zhongshan-HongYu’ (ZS-HY) based on the transcriptome. In this study, the 92 GST genes identified through a comprehensive bioinformatics analysis were unevenly present in all chromosomes of grapes, except chromosomes 3, 9 and 10. Through the analysis of the chromosomal location, gene structure, conserved domains, phylogenetic relationships and cis -acting elements of GST family genes, the phylogenetic tree divided the GST genes into 9 subfamilies. Eighteen GST genes were screened and identified from grape berries via a transcriptome sequencing analysis, of which 4 belonged to the phi subfamily and 14 to the tau subfamily, and the expression levels of these GST genes were not tissue-specific. The phylogenetic analysis indicated that VvGST4 was closely related to PhAN9 and AtTT19 . This study provides a foundation for the analysis of the GST gene family and insight into the roles of GSTs in grape anthocyanin transport.
    Keywords GST ; genome-wide ; gene family ; teinturier grape ; anthocyanin ; Biology (General) ; QH301-705.5 ; Chemistry ; QD1-999
    Subject code 572
    Language English
    Publishing date 2022-07-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  5. Article: A new early ripening red table grape cultivar with muscat flavor 'Ruidu Hongyu'

    Zhang, G. n / Yan, A. g / Sun, L. i / Wang, X. e / Wang, H. g / Ren, J. g / Xu Haiying

    Journal of Fruit Science

    2016  Volume 33, Issue 12, Page(s) 1592–1595

    Abstract: Ruidu Hongyu’ is an early ripening red table grape cultivar (*Vitis vinifera*) with muscat flavor ... weak. The cluster of ‘Ruidu Hongyu’ is conical with single or double shoulders. It has an average ...

    Institution Forestry and Pomology Institute, Beijing Academy of Agro-Foresty Sciences, Beijing Engineering Research Center for Decidiuous Fruit Trees, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture, Beijing 100093, China
    Abstract ‘Ruidu Hongyu’ is an early ripening red table grape cultivar (*Vitis vinifera*) with muscat flavor. The original plant was selected from the bud mutation of ‘Ruidu Xiangyu’ in 2005 at the vineyard in Institute of Forestry and Pomology, Beijing Academy of Agricultural and Forestry Science (BAAFS).‘Ruiduxiangyu’ is a green table grape cultivar selected from a cross between ‘Jingxiu’ and ‘Xiangfei’. In 2005, we found the fruit of a single shoot of the grafted vine was red. Besides, it ripened early and showed muscat flavor. We compared its characteristics with ‘Ruidu Xiangyu’ in detail. The results showed that it was indeed a bud mutation. Then it was evaluated in regional trials under the name of ‘26-11-4R’ in the districts of Haidian, Pinggu and Daxing. After years of observation, ‘26-11-4R’ ripened early and had muscat flavor which showed great potential in the market. It was finally released as ‘Ruiduhongyu’ after the validation by the Committee of Beijing Cultivar Registration. The vigor of the vine is medium to strong. The shoot is half upright and the shoot tip is open with medium hair. The color of dorsal side of internodes is green with red strips, while the color of ventral side of internodes is green. The tendril is discontinuous, the length is medium. The mature leaf is heart shape, green, pentagonal, the size and thickness are medium. The blade margin is pronounced. The upper lobe has a little overlapped while the lower lobe is open. The teeth are convex on both sides. The petiole is shorter than the main vein. The petiole sinus is sagittal shaped. Average intensity of anthocyanin coloration of the veins on both sides of the leaf is extremely weak. The cluster of ‘Ruidu Hongyu’ is conical with single or double shoulders. It has an average weight of 404.71 g, average length of 20.13 cm and average width of 12.27 cm. The length of rachis and peduncle is 5.14 cm and 0.83 cm, respectively. The cluster density is medium to loose. The berry is oval or long elliptic shaped, 18.14 mm in diameter and 24.45 mm long, the average weight is 5.52 g with the maximum of 7 g. The berries are uniform in shape and color. The skin is crispy, with no or a little astringency. The firmness of the berry is medium. The flesh has a light to medium scent of muscat flavor. The flesh is juicy, crispy and colorless. The total soluble solids is 18.20%, the titratable acidity is 0.40%. In Beijing area, the time of budburst is usually at middle to late April, the flowering begins at late May, the fruit ripens and the shoot matures both at middle to late August. The average rate of bud burst is 83.16%, the rate of fruiting shoot is 70.30% and the fructification coefficient is 1.70. The average yield is about 30 tons per hectare. In years, there was no severe winter injury or sprouting. It is resistant to fungal disease, but sensitive to downy mildew and anthracnose. When cultivated in Beijing, rain-shelter cultivation can reduce fungal disease so that decrease pesticides consumption and increase the level of nutritional reserve. Flower thinning and cluster trimming is highly recommended, keep 70-90 berries per cluster is appropriate. Without rain-shelter facility, pay great attention to downy mildew and anthracnose. Avoid high productivity if cultivated in greenhouse, otherwise the fruit size and flavor could be affected. One single trunk with horizontal cordon trained system is recommended. [AZ 407a]
    Language Chamorro ; English
    Document type Article
    ZDB-ID 2047377-1
    ISSN 1009-9980
    ISSN 1009-9980
    DOI 10.13925/j.cnki.gsxb.20160159
    Database Viticulture and Oenology Abstracts

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  6. Book ; Online: Insect Microbiome and Immunity

    Zhang, Hongyu / Li, Xiaoxue / Wang, Yin / Wang, Yin

    2023  

    Keywords Medicine ; innate immunity ; bacterial infection ; Ostrinia furnacalis ; PGRPs ; grasshopper ; gut microbiome ; microbial diversity ; cellulose digestibility ; 16S rRNA ; brown planthopper ; gut microbiota ; fungal entomopathogen ; gut immunity ; insect microbiota ; plant secondary substance ; insecticide resistance ; detoxifying enzymes ; insect immune system ; Typhaea stercorea ; fungivore ; alimentary canal ; 16S rRNA amplicon sequencing ; bacterial symbionts ; Messor orientalis ; harvester ants ; actinomycetes ; plant pathogens ; fungicide ; Diaphorina citri ; host species ; 16S rRNA sequencing ; metagenomic ; feeding habits ; KEGG ; CAZymes ; Ensifera ; host gut microbiota ; parasitoids ; host-parasite-microbe interactions ; host regulation ; Spodoptera frugiperda ; developmental stage ; host diet ; environmental habitat ; actinobacteria ; Streptomyces globisporus subsp. globisporus ; albomycin ; defensive symbiosis ; ants ; Messor structor ; Nub ; Bactrocera dorsalis ; the antibacterial peptide ; gut microbes ; IMD pathway
    Language English
    Size 1 electronic resource (200 pages)
    Publisher MDPI - Multidisciplinary Digital Publishing Institute
    Publishing place Basel
    Document type Book ; Online
    Note English
    HBZ-ID HT030377044
    ISBN 9783036568690 ; 3036568697
    Database ZB MED Catalogue: Medicine, Health, Nutrition, Environment, Agriculture

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  7. Book ; Online: Advances of Neuroimaging and Data Analysis

    Zhang, Jue / Manor, Brad / An, Hongyu / Wang, Xiaoying

    2020  

    Keywords Medicine ; Neurology & clinical neurophysiology ; Biomedical Imaging ; Functional MRI ; Sleeping Medicine ; Medical image and signal processing ; Rehabilitation medicine
    Size 1 electronic resource (177 pages)
    Publisher Frontiers Media SA
    Document type Book ; Online
    Note English ; Open Access
    HBZ-ID HT021230269
    ISBN 9782889637508 ; 2889637506
    Database ZB MED Catalogue: Medicine, Health, Nutrition, Environment, Agriculture

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  8. Article ; Online: Giant adult granulosa cell tumor and "atypical" Meigs syndrome: A case report.

    Wang, Hongyu / Wang, Jinbao / Yu, Jianping / Han, Xiaopeng

    Asian journal of surgery

    2024  

    Language English
    Publishing date 2024-03-23
    Publishing country Netherlands
    Document type Letter
    ZDB-ID 1068461-x
    ISSN 0219-3108 ; 1015-9584
    ISSN (online) 0219-3108
    ISSN 1015-9584
    DOI 10.1016/j.asjsur.2024.03.064
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article: Evaluating the Utilities of Foundation Models in Single-cell Data Analysis.

    Liu, Tianyu / Li, Kexing / Wang, Yuge / Li, Hongyu / Zhao, Hongyu

    bioRxiv : the preprint server for biology

    2024  

    Abstract: Foundation Models (FMs) have made significant strides in both industrial and scientific domains. In this paper, we evaluate the performance of FMs in single-cell sequencing data analysis through comprehensive experiments across eight downstream tasks ... ...

    Abstract Foundation Models (FMs) have made significant strides in both industrial and scientific domains. In this paper, we evaluate the performance of FMs in single-cell sequencing data analysis through comprehensive experiments across eight downstream tasks pertinent to single-cell data. By comparing ten different single-cell FMs with task-specific methods, we found that single-cell FMs may not consistently excel in all tasks than task-specific methods. However, the emergent abilities and the successful applications of cross-species/cross-modality transfer learning of FMs are promising. In addition, we present a systematic evaluation of the effects of hyper-parameters, initial settings, and stability for training single-cell FMs based on a proposed
    Language English
    Publishing date 2024-02-27
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2023.09.08.555192
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: A commentary on "Portal vein thrombosis and liver transplantation: management, matching, and outcomes: a retrospective multicenter cohort study".

    Wang, Junjian / Ye, Xiaoang / Chen, Hongyu

    International journal of surgery (London, England)

    2024  

    Language English
    Publishing date 2024-04-22
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2212038-5
    ISSN 1743-9159 ; 1743-9191
    ISSN (online) 1743-9159
    ISSN 1743-9191
    DOI 10.1097/JS9.0000000000001485
    Database MEDical Literature Analysis and Retrieval System OnLINE

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    In stock of ZB MED Cologne/Königswinter

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