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  1. Article ; Online: Interplay of p53 and XIAP protein dynamics orchestrates cell fate in response to chemotherapy.

    Abukwaik, Roba / Vera-Siguenza, Elias / Tennant, Daniel A / Spill, Fabian

    Journal of theoretical biology

    2023  Volume 572, Page(s) 111562

    Abstract: Chemotherapeutic drugs are used to treat almost all types of cancer, but the intended response, i.e., elimination, is often incomplete, with a subset of cancer cells resisting treatment. Two critical factors play a role in chemoresistance: the p53 tumour ...

    Abstract Chemotherapeutic drugs are used to treat almost all types of cancer, but the intended response, i.e., elimination, is often incomplete, with a subset of cancer cells resisting treatment. Two critical factors play a role in chemoresistance: the p53 tumour suppressor gene and the X-linked inhibitor of apoptosis (XIAP). These proteins have been shown to act synergistically to elicit cellular responses upon DNA damage induced by chemotherapy, yet, the mechanism is poorly understood. This study introduces a mathematical model characterising the apoptosis pathway activation by p53 before and after mitochondrial outer membrane permeabilisation upon treatment with the chemotherapy Doxorubicin (Dox). "In-silico" simulations show that the p53 dynamics change dose-dependently. Under medium to high doses of Dox, p53 concentration ultimately stabilises to a high level regardless of XIAP concentrations. However, caspase-3 activation may be triggered or not depending on the XIAP induction rate, ultimately determining whether the cell will perish or resist. Consequently, the model predicts that failure to activate apoptosis in some cancer cells expressing wild-type p53 might be due to heterogeneity between cells in upregulating the XIAP protein, rather than due to the p53 protein concentration. Our model suggests that the interplay of the p53 dynamics and the XIAP induction rate is critical to determine the cancer cells' therapeutic response.
    MeSH term(s) X-Linked Inhibitor of Apoptosis Protein/genetics ; X-Linked Inhibitor of Apoptosis Protein/metabolism ; Tumor Suppressor Protein p53/metabolism ; Apoptosis/physiology ; Cell Death ; Doxorubicin/pharmacology ; Cell Line, Tumor
    Chemical Substances X-Linked Inhibitor of Apoptosis Protein ; Tumor Suppressor Protein p53 ; Doxorubicin (80168379AG)
    Language English
    Publishing date 2023-06-20
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2972-5
    ISSN 1095-8541 ; 0022-5193
    ISSN (online) 1095-8541
    ISSN 0022-5193
    DOI 10.1016/j.jtbi.2023.111562
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Proline metabolism and redox; maintaining a balance in health and disease.

    Vettore, Lisa A / Westbrook, Rebecca L / Tennant, Daniel A

    Amino acids

    2021  Volume 53, Issue 12, Page(s) 1779–1788

    Abstract: Proline is a non-essential amino acid with key roles in protein structure/function and maintenance of cellular redox homeostasis. It is available from dietary sources, generated de novo within cells, and released from protein structures; a noteworthy ... ...

    Abstract Proline is a non-essential amino acid with key roles in protein structure/function and maintenance of cellular redox homeostasis. It is available from dietary sources, generated de novo within cells, and released from protein structures; a noteworthy source being collagen. Its catabolism within cells can generate ATP and reactive oxygen species (ROS). Recent findings suggest that proline biosynthesis and catabolism are essential processes in disease; not only due to the role in new protein synthesis as part of pathogenic processes but also due to the impact of proline metabolism on the wider metabolic network through its significant role in redox homeostasis. This is particularly clear in cancer proliferation and metastatic outgrowth. Nevertheless, the precise identity of the drivers of cellular proline catabolism and biosynthesis, and the overall cost of maintaining appropriate balance is not currently known. In this review, we explore the major drivers of proline availability and consumption at a local and systemic level with a focus on cancer. Unraveling the main factors influencing proline metabolism in normal physiology and disease will shed light on new effective treatment strategies.
    MeSH term(s) Animals ; Homeostasis/physiology ; Humans ; Neoplasms/metabolism ; Oxidation-Reduction ; Proline/metabolism ; Protein Biosynthesis/physiology ; Reactive Oxygen Species/metabolism
    Chemical Substances Reactive Oxygen Species ; Proline (9DLQ4CIU6V)
    Language English
    Publishing date 2021-07-22
    Publishing country Austria
    Document type Journal Article ; Review
    ZDB-ID 1121341-3
    ISSN 1438-2199 ; 0939-4451
    ISSN (online) 1438-2199
    ISSN 0939-4451
    DOI 10.1007/s00726-021-03051-2
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Graph learning for particle accelerator operations.

    Wang, Song / Tennant, Chris / Moser, Daniel / Larrieu, Theo / Li, Jundong

    Frontiers in big data

    2024  Volume 7, Page(s) 1366469

    Abstract: Particle accelerators play a crucial role in scientific research, enabling the study of fundamental physics and materials science, as well as having important medical applications. This study proposes a novel graph learning approach to classify ... ...

    Abstract Particle accelerators play a crucial role in scientific research, enabling the study of fundamental physics and materials science, as well as having important medical applications. This study proposes a novel graph learning approach to classify operational beamline configurations as good or bad. By considering the relationships among beamline elements, we transform data from components into a heterogeneous graph. We propose to learn from historical, unlabeled data via our self-supervised training strategy along with fine-tuning on a smaller, labeled dataset. Additionally, we extract a low-dimensional representation from each configuration that can be visualized in two dimensions. Leveraging our ability for classification, we map out regions of the low-dimensional latent space characterized by good and bad configurations, which in turn can provide valuable feedback to operators. This research demonstrates a paradigm shift in how complex, many-dimensional data from beamlines can be analyzed and leveraged for accelerator operations.
    Language English
    Publishing date 2024-04-11
    Publishing country Switzerland
    Document type Journal Article
    ISSN 2624-909X
    ISSN (online) 2624-909X
    DOI 10.3389/fdata.2024.1366469
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Metabolic implications of hypoxia and pseudohypoxia in pheochromocytoma and paraganglioma.

    Kluckova, Katarina / Tennant, Daniel A

    Cell and tissue research

    2018  Volume 372, Issue 2, Page(s) 367–378

    Abstract: Hypoxia is a critical driver of cancer pathogenesis, directly inducing malignant phenotypes such as epithelial-mesenchymal transition, stem cell-like characteristics and metabolic transformation. However, hypoxia-associated phenotypes are often observed ... ...

    Abstract Hypoxia is a critical driver of cancer pathogenesis, directly inducing malignant phenotypes such as epithelial-mesenchymal transition, stem cell-like characteristics and metabolic transformation. However, hypoxia-associated phenotypes are often observed in cancer in the absence of hypoxia, a phenotype known as pseudohypoxia, which is very well documented in specific tumour types, including in paraganglioma/pheochromocytoma (PPGL). Approximately 40% of the PPGL tumours carry a germ line mutation in one of a number of susceptibility genes of which those that are found in succinate dehydrogenase (SDH) or in von Hippel-Lindau (VHL) genes manifest a strong pseudohypoxic phenotype. Mutations in SDH are oncogenic, forming tumours in a select subset of tissues, but the cause for this remains elusive. Although elevated succinate levels lead to increase in hypoxia-like signalling, there are other phenotypes that are being increasingly recognised in SDH-mutated PPGL, such as DNA hypermethylation. Further, recently unveiled changes in metabolic re-wiring of SDH-deficient cells might help to decipher cancer related roles of SDH in the future. In this review, we will discuss the various implications that the malfunctioning SDH can have and its impact on cancer development.
    MeSH term(s) Adrenal Gland Neoplasms ; Animals ; Humans ; Hypoxia/metabolism ; Paraganglioma/metabolism ; Pheochromocytoma/metabolism ; Reactive Oxygen Species/metabolism ; Signal Transduction
    Chemical Substances Reactive Oxygen Species
    Language English
    Publishing date 2018-02-15
    Publishing country Germany
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 125067-x
    ISSN 1432-0878 ; 0302-766X
    ISSN (online) 1432-0878
    ISSN 0302-766X
    DOI 10.1007/s00441-018-2801-6
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: TNF-α signals through ITK-Akt-mTOR to drive CD4

    Bishop, Emma L / Gudgeon, Nancy / Fulton-Ward, Taylor / Stavrou, Victoria / Roberts, Jennie / Boufersaoui, Adam / Tennant, Daniel A / Hewison, Martin / Raza, Karim / Dimeloe, Sarah

    Science signaling

    2024  Volume 17, Issue 833, Page(s) eadg5678

    Abstract: Upon activation, T cells undergo metabolic reprogramming to meet the bioenergetic demands of clonal expansion and effector function. Because dysregulated T cell cytokine production and metabolic phenotypes coexist in chronic inflammatory disease, ... ...

    Abstract Upon activation, T cells undergo metabolic reprogramming to meet the bioenergetic demands of clonal expansion and effector function. Because dysregulated T cell cytokine production and metabolic phenotypes coexist in chronic inflammatory disease, including rheumatoid arthritis (RA), we investigated whether inflammatory cytokines released by differentiating T cells amplified their metabolic changes. We found that tumor necrosis factor-α (TNF-α) released by human naïve CD4
    MeSH term(s) Humans ; Arthritis, Rheumatoid/metabolism ; Arthritis, Rheumatoid/pathology ; Arthritis, Rheumatoid/immunology ; Arthritis, Rheumatoid/genetics ; TOR Serine-Threonine Kinases/metabolism ; Proto-Oncogene Proteins c-akt/metabolism ; Proto-Oncogene Proteins c-akt/genetics ; Tumor Necrosis Factor-alpha/metabolism ; CD4-Positive T-Lymphocytes/metabolism ; CD4-Positive T-Lymphocytes/immunology ; Signal Transduction ; Cell Differentiation ; Mitochondria/metabolism ; Metabolic Reprogramming
    Chemical Substances TOR Serine-Threonine Kinases (EC 2.7.11.1) ; Proto-Oncogene Proteins c-akt (EC 2.7.11.1) ; Tumor Necrosis Factor-alpha ; MTOR protein, human (EC 2.7.1.1)
    Language English
    Publishing date 2024-04-23
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, N.I.H., Extramural
    ZDB-ID 2417226-1
    ISSN 1937-9145 ; 1945-0877
    ISSN (online) 1937-9145
    ISSN 1945-0877
    DOI 10.1126/scisignal.adg5678
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Dentistry for patients with haemophilia: Trialling a safe and economical change in management.

    Sundaresan, Pritam Daniel / Kruger, Estie / Lim, Mathew / McGeachie, John / Tennant, Marc

    Haemophilia : the official journal of the World Federation of Hemophilia

    2024  Volume 30, Issue 2, Page(s) 404–409

    Abstract: Introduction: While the dental management of patients with haemophilia has changed considerably in the last decade, haemophiliacs in Western Australia have continued to receive pre-operative factor support for dentistry regardless of the type of dental ... ...

    Abstract Introduction: While the dental management of patients with haemophilia has changed considerably in the last decade, haemophiliacs in Western Australia have continued to receive pre-operative factor support for dentistry regardless of the type of dental procedure.
    Aim: To review the efficacy and safety of established dental protocols that reduce factor use in the dental management of patients with haemophilia and to estimate cost savings.
    Methods: Records of 11 patients with haemophilia that were seen in the pilot programme period were reviewed. These were cross-referenced with previous dental and haematology notes that stated the amount and type of pre-operative factor used. Cost savings were estimated using the Australian National Blood Authority's Product List.
    Results: All study participants were male, and included those with haemophilia A (n = 9), and B (n = 2). Mean age was 45 years (range 22-80). A variety of dental treatments were undertaken, and no pre-operative factor was used. Patients on prophylaxis (n = 6) received dental treatment the same day as their regular factor administration. It was estimated AUD$26,314 was saved by not using pre-operative factor. One patient had bleeding post-extraction and was seen the following day to achieve haemostasis using local measures. The remaining patients had no complaints of post-operative bleeding, and did not require any further haemostatic measures.
    Conclusion: This pilot programme supports data that haemophiliacs can safely receive a variety of dental treatments without the need for pre-operative factor, and the significant cost savings of doing so. Further data is required to support this protocol for invasive dental procedures.
    MeSH term(s) Adult ; Aged ; Aged, 80 and over ; Humans ; Male ; Middle Aged ; Young Adult ; Australia ; Dental Care ; Hemophilia A/drug therapy ; Hemostasis ; Postoperative Hemorrhage/prevention & control
    Language English
    Publishing date 2024-02-20
    Publishing country England
    Document type Journal Article
    ZDB-ID 1229713-6
    ISSN 1365-2516 ; 1351-8216 ; 1355-0691
    ISSN (online) 1365-2516
    ISSN 1351-8216 ; 1355-0691
    DOI 10.1111/hae.14947
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: New aspects of amino acid metabolism in cancer.

    Vettore, Lisa / Westbrook, Rebecca L / Tennant, Daniel A

    British journal of cancer

    2019  Volume 122, Issue 2, Page(s) 150–156

    Abstract: An abundant supply of amino acids is important for cancers to sustain their proliferative drive. Alongside their direct role as substrates for protein synthesis, they can have roles in energy generation, driving the synthesis of nucleosides and ... ...

    Abstract An abundant supply of amino acids is important for cancers to sustain their proliferative drive. Alongside their direct role as substrates for protein synthesis, they can have roles in energy generation, driving the synthesis of nucleosides and maintenance of cellular redox homoeostasis. As cancer cells exist within a complex and often nutrient-poor microenvironment, they sometimes exist as part of a metabolic community, forming relationships that can be both symbiotic and parasitic. Indeed, this is particularly evident in cancers that are auxotrophic for particular amino acids. This review discusses the stromal/cancer cell relationship, by using examples to illustrate a number of different ways in which cancer cells can rely on and contribute to their microenvironment - both as a stable network and in response to therapy. In addition, it examines situations when amino acid synthesis is driven through metabolic coupling to other reactions, and synthesis is in excess of the cancer cell's proliferative demand. Finally, it highlights the understudied area of non-proteinogenic amino acids in cancer metabolism and their potential role.
    MeSH term(s) Amino Acids/genetics ; Amino Acids/metabolism ; Cell Proliferation/genetics ; Energy Metabolism/genetics ; Humans ; Neoplasms/genetics ; Neoplasms/metabolism ; Protein Biosynthesis/genetics ; Tumor Microenvironment/genetics
    Chemical Substances Amino Acids
    Language English
    Publishing date 2019-12-10
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 80075-2
    ISSN 1532-1827 ; 0007-0920
    ISSN (online) 1532-1827
    ISSN 0007-0920
    DOI 10.1038/s41416-019-0620-5
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: PK-M2 Makes Cells Sweeter on HIF1.

    Tennant, Daniel A

    Cell

    2011  Volume 145, Issue 5, Page(s) 647–649

    Abstract: The transcription factor hypoxia-inducible factor 1 (HIF1) facilitates the induction of enzymes necessary for anaerobic glycolysis. Luo et al. (2011) now identify pyruvate kinase (PK)-M2 as an intriguing new interacting partner for HIF1, revealing a ... ...

    Abstract The transcription factor hypoxia-inducible factor 1 (HIF1) facilitates the induction of enzymes necessary for anaerobic glycolysis. Luo et al. (2011) now identify pyruvate kinase (PK)-M2 as an intriguing new interacting partner for HIF1, revealing a potential mechanism for the Warburg effect, an elevation in aerobic glycolytic metabolism frequently observed in cancer.
    Language English
    Publishing date 2011-05-27
    Publishing country United States
    Document type Comment ; Journal Article
    ZDB-ID 187009-9
    ISSN 1097-4172 ; 0092-8674
    ISSN (online) 1097-4172
    ISSN 0092-8674
    DOI 10.1016/j.cell.2011.05.009
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Isocitrate dehydrogenase (IDH), succinate dehydrogenase (SDH), fumarate hydratase (FH): three players for one phenotype in cancer?

    Laurenti, Giulio / Tennant, Daniel A

    Biochemical Society transactions

    2016  Volume 44, Issue 4, Page(s) 1111–1116

    Abstract: In the early 1920s Otto Warburg observed that cancer cells have altered metabolism and from this, posited that mitochondrial dysfunction underpinned the aetiology of cancers. The more recent identification of mutations of mitochondrial metabolic enzymes ... ...

    Abstract In the early 1920s Otto Warburg observed that cancer cells have altered metabolism and from this, posited that mitochondrial dysfunction underpinned the aetiology of cancers. The more recent identification of mutations of mitochondrial metabolic enzymes in a wide range of human cancers has now provided a direct link between metabolic alterations and cancer. In this review we discuss the consequences of dysfunction of three metabolic enzymes involved in or associated with the tricarboxylic acid (TCA) cycle: succinate dehydrogenase (SDH), fumarate hydratase (FH) and isocitrate dehydrogenase (IDH) focusing on the similarity between the phenotypes of cancers harbouring these mutations.
    MeSH term(s) Citric Acid Cycle ; Fumarate Hydratase/genetics ; Fumarate Hydratase/metabolism ; Humans ; Isocitrate Dehydrogenase/genetics ; Isocitrate Dehydrogenase/metabolism ; Mitochondria/genetics ; Mitochondria/metabolism ; Models, Biological ; Mutation ; Neoplasms/enzymology ; Neoplasms/genetics ; Neoplasms/metabolism ; Phenotype ; Succinate Dehydrogenase/genetics ; Succinate Dehydrogenase/metabolism
    Chemical Substances Isocitrate Dehydrogenase (EC 1.1.1.41) ; Succinate Dehydrogenase (EC 1.3.99.1) ; Fumarate Hydratase (EC 4.2.1.2)
    Language English
    Publishing date 2016-08-15
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 184237-7
    ISSN 1470-8752 ; 0300-5127
    ISSN (online) 1470-8752
    ISSN 0300-5127
    DOI 10.1042/BST20160099
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  10. Article ; Online: Metabolic adaptations to hypoxia in the neonatal mouse forebrain can occur independently of the transporters SLC7A5 and SLC3A2.

    Fitzgerald, Eamon / Roberts, Jennie / Tennant, Daniel A / Boardman, James P / Drake, Amanda J

    Scientific reports

    2021  Volume 11, Issue 1, Page(s) 9092

    Abstract: Neonatal encephalopathy due to hypoxia-ischemia is associated with adverse neurodevelopmental effects. The involvement of branched chain amino acids (BCAAs) in this is largely unexplored. Transport of BCAAs at the plasma membrane is facilitated by SLC7A5/ ...

    Abstract Neonatal encephalopathy due to hypoxia-ischemia is associated with adverse neurodevelopmental effects. The involvement of branched chain amino acids (BCAAs) in this is largely unexplored. Transport of BCAAs at the plasma membrane is facilitated by SLC7A5/SLC3A2, which increase with hypoxia. We hypothesized that hypoxia would alter BCAA transport and metabolism in the neonatal brain. We investigated this using an organotypic forebrain slice culture model with, the SLC7A5/SLC3A2 inhibitor, 2-Amino-2-norbornanecarboxylic acid (BCH) under normoxic or hypoxic conditions. We subsequently analysed the metabolome and candidate gene expression. Hypoxia was associated with increased expression of SLC7A5 and SLC3A2 and an increased tissue abundance of BCAAs. Incubation of slices with
    MeSH term(s) Adaptation, Biological ; Amino Acids, Branched-Chain/metabolism ; Animals ; Animals, Newborn ; Biological Transport ; Carboxylic Acids/pharmacology ; Cell Hypoxia ; Female ; Fusion Regulatory Protein 1, Heavy Chain/genetics ; Fusion Regulatory Protein 1, Heavy Chain/metabolism ; Gene Expression Regulation ; Hypoxia/genetics ; Hypoxia/metabolism ; Large Neutral Amino Acid-Transporter 1/genetics ; Large Neutral Amino Acid-Transporter 1/metabolism ; Male ; Mice, Inbred C57BL ; Norbornanes/pharmacology ; Organ Culture Techniques ; Prosencephalon/drug effects ; Prosencephalon/physiology ; Mice
    Chemical Substances 2-amino-2-norbornanecarboxylic acid ; Amino Acids, Branched-Chain ; Carboxylic Acids ; Fusion Regulatory Protein 1, Heavy Chain ; Large Neutral Amino Acid-Transporter 1 ; Norbornanes ; Slc3A2 protein, mouse ; Slc7a5 protein, mouse
    Language English
    Publishing date 2021-04-27
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-021-88757-9
    Database MEDical Literature Analysis and Retrieval System OnLINE

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