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  1. Article: Callus Production Protocol for Aegle marmelos (L.) Corr.: As a Tool for Extraction of Secondary Metabolites

    Fonseka, D.L.C.K. / Aluthgamage, H.N.

    Agricultural science digest. 2021 Sept., v. 41, no. 3

    2021  

    Abstract: Aegle marmelos (L.) Corr. is an important medicinal and a fruit tree belongs to the family Rutaceae ... in order to extract secondary metabolites from Aegle marmelos (L). ...

    Abstract Aegle marmelos (L.) Corr. is an important medicinal and a fruit tree belongs to the family Rutaceae possessing numerous valuable secondary metabolites. The growing commercial importance for secondary metabolites has led to a great demand in the pharmaceutical industry in recent years. Therefore, an efficient callus production protocol was developed as a tool for extracting valuable secondary metabolites from Aegle marmelos. For seeds, callus induction was observed under three conditions as with seed coat, after removing seed coat and split into two halves after removing seed coat. For callus multiplication, 1cm ² pieces of initiated calli were used. These explants were established in MS medium supplemented with combinations of 2, 4 D either with BAP or Kinetin. All experiments were arranged according to the Completely Randomized Design (CRD) with 20 replicates at the Tissue Culture Laboratory, Department of Crop Science, Faculty of Agriculture, University of Ruhuna, Sri Lanka, for a period of 1 year. Percentage of fungal and bacterial contaminations and percentage of bleached explants were observed to select the best explant/s. Percentage of responded explants were observed to select the best condition for callus induction and quality of callus. Growth of callus was observed visually by giving a score. Best hormonal combination for callus multiplication was observed as fresh weight and dry weight of callus produced under each treatment. High quality callus with higher growth was observed in all combinations of BAP and 2, 4 D tested: ranging from 0.5 mgL⁻¹ to 1.5 mgL⁻¹ BAP and 1.0 mgL⁻¹ to 2.0 mgL⁻¹ 2,4 D in Murashige and Skoog (MS) medium. Initiated calli were further multiplied in MS medium supplemented with 2,4 D combined with either BAP or Kinetin. Highest amount of callus biomass was recorded in the MS medium with 0.5 mgL⁻¹ 2, 4 D and 1.0 mgL⁻¹ Kinetin (132.58 gL⁻¹ fresh weight). The optimized protocol could be used to produce higher amount of callus in order to extract secondary metabolites from Aegle marmelos (L).
    Keywords Aegle marmelos ; agricultural sciences ; biomass ; callus ; fruit trees ; fungi ; kinetin ; pharmaceutical industry ; secondary metabolites ; seed coat ; tissue culture ; Sri Lanka
    Language English
    Dates of publication 2021-09
    Size p. 455-459.
    Publishing place Agricultural Research Communication Centre
    Document type Article
    ISSN 0976-0547
    DOI 10.18805/ag.D-300
    Database NAL-Catalogue (AGRICOLA)

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  2. Article: Role of Plasmapheresis and Extracorporeal Membrane Oxygenation in the Treatment of Leptospirosis Complicated with Pulmonary Hemorrhages.

    Fonseka, C L / Lekamwasam, S

    Journal of tropical medicine

    2018  Volume 2018, Page(s) 4520185

    Abstract: Introduction: Leptospirosis is an emerging infectious disease associated with multiorgan involvement and significant morbidity and mortality. Although pulmonary hemorrhage due to leptospirosis has a high fatality, specific treatment options are limited ... ...

    Abstract Introduction: Leptospirosis is an emerging infectious disease associated with multiorgan involvement and significant morbidity and mortality. Although pulmonary hemorrhage due to leptospirosis has a high fatality, specific treatment options are limited and their efficacy is not adequately proven. We opted to find out the current evidence on plasmapheresis and extracorporeal membrane oxygenation (ECMO) in pulmonary hemorrhages due to leptospirosis.
    Methods: The first search was conducted in PubMed, OVID, Google Scholar, and Cochrane clinical trial registry using keywords "leptospirosis" OR "Leptospira" OR "Weil's disease" AND "plasmapheresis" OR "plasma exchange" AND "pulmonary hemorrhage" OR "alveolar hemorrhage" OR "lung hemorrhage" and the second search was done using keyword "leptospirosis" OR "Leptospira" OR "Weil's disease" AND "ECMO" OR "Extracorporeal membrane oxygenation." The searches were not limited by study design or the date of publication. Only articles written in English were reviewed. Although we intended to include only clinical trials, it was decided later to include other information such as case reports and case series which addressed these treatment modalities. Two authors selected articles independently in a blinded manner using a set of inclusion and exclusion criteria and discrepancies were solved after discussions.
    Results: The information found was very limited. This included one clinical trial which showed a significant survival benefit with plasmapheresis but the study design had many limitations. Two case reports described the benefit of plasmapheresis in severe leptospirosis with pulmonary hemorrhages. There were eight case reports where ECMO was performed and out of all only one patient has died. One retrospective study on patients with severe leptospirosis mentioned that four out of five patients with pulmonary hemorrhages survived after being treated with ECMO.
    Conclusions: Current evidence is insufficient to recommend the routine use of plasmapheresis or ECMO for patients presenting with pulmonary hemorrhages due to leptospirosis. ECMO may be a promising mode of treatment in acute respiratory failure in leptospirosis related pulmonary hemorrhages. These treatment modalities, however, can be applied based on the availability of resources and expertise at the discretion of the clinician in charge, considering patient related factors such as cardiovascular stability and derangement of coagulation profile. Clinical trials conducted adhering to standard procedures are urgently required to establish the efficacy of these treatment modalities.
    Language English
    Publishing date 2018-12-02
    Publishing country Egypt
    Document type Journal Article ; Review
    ZDB-ID 2546526-0
    ISSN 1687-9694 ; 1687-9686
    ISSN (online) 1687-9694
    ISSN 1687-9686
    DOI 10.1155/2018/4520185
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Ascochyta blight in North Dakota field pea: the pathogen complex and its fungicide sensitivity.

    Fonseka, Dimitri L / Markell, Samuel G / Zaccaron, Marcio L / Ebert, Malaika K / Pasche, Julie S

    Frontiers in plant science

    2023  Volume 14, Page(s) 1165269

    Abstract: Worldwide, Ascochyta blight is caused by a complex of host-specific fungal pathogens, ... ...

    Abstract Worldwide, Ascochyta blight is caused by a complex of host-specific fungal pathogens, including
    Language English
    Publishing date 2023-08-02
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2613694-6
    ISSN 1664-462X
    ISSN 1664-462X
    DOI 10.3389/fpls.2023.1165269
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Spatial and Temporal Sensitivity of Alternaria Species Associated With Potato Foliar Diseases to Demethylation Inhibiting and Anilino-Pyrimidine Fungicides.

    Fonseka, D L / Gudmestad, N C

    Plant disease

    2016  Volume 100, Issue 9, Page(s) 1848–1857

    Abstract: Early blight and brown spot, caused by Alternaria solani and Alternaria alternata, respectively, are important foliar diseases of potato, affecting both tuber yield and quality. Most of the commercial cultivars lack resistance; therefore, the application ...

    Abstract Early blight and brown spot, caused by Alternaria solani and Alternaria alternata, respectively, are important foliar diseases of potato, affecting both tuber yield and quality. Most of the commercial cultivars lack resistance; therefore, the application of foliar fungicides remains a primary disease management strategy. Baseline sensitivities of A. solani to difenoconazole and metconazole (demethylation inhibitors) using mycelial growth assay exhibited similar intrinsic activity against the pathogen with mean EC
    Language English
    Publishing date 2016-06-13
    Publishing country United States
    Document type Journal Article
    ZDB-ID 754182-x
    ISSN 0191-2917
    ISSN 0191-2917
    DOI 10.1094/PDIS-01-16-0116-RE
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Automated clustering reveals CD4

    Mulhearn, Ben / Marshall, Lysette / Sutcliffe, Megan / Hannes, Susan K / Fonseka, Chamith / Hussell, Tracy / Raychaudhuri, Soumya / Barton, Anne / Viatte, Sebastien

    Frontiers in immunology

    2023  Volume 14, Page(s) 1094872

    Abstract: Background: Despite the report of an imbalance between CD4: Objectives: To capture previously reported Th imbalance in RA with deep immunophenotyping techniques; to compare hypothesis-free unsupervised automated clustering with hypothesis-driven ... ...

    Abstract Background: Despite the report of an imbalance between CD4
    Objectives: To capture previously reported Th imbalance in RA with deep immunophenotyping techniques; to compare hypothesis-free unsupervised automated clustering with hypothesis-driven conventional biaxial gating and explore if Th cell heterogeneity accounts for conflicting association results.
    Methods: Unstimulated and stimulated peripheral blood mononuclear cells from 10 patients with RA and 10 controls were immunophenotyped with a 37-marker panel by mass cytometry (chemokine receptors, intra-cellular cytokines, intra-nuclear transcription factors). First, conventional biaxial gating and standard definitions of Th cell subsets were applied to compare subset frequencies between cases and controls. Second, unsupervised clustering was performed with FlowSOM and analysed using mixed-effects modelling of Associations of Single Cells (MASC).
    Results: Conventional analytical techniques fail to identify classical Th subset imbalance, while unsupervised automated clustering, by allowing for unusual marker combinations, identified an imbalance between pro- and anti-inflammatory subsets. For example, a pro-inflammatory Th1-like (IL-2
    Conclusion: Taking an unbiased approach to large dataset analysis using automated clustering algorithms captures non-canonical CD4
    MeSH term(s) Humans ; CD4-Positive T-Lymphocytes ; Leukocytes, Mononuclear ; Interleukin-2 ; T-Lymphocyte Subsets ; Arthritis, Rheumatoid
    Chemical Substances Interleukin-2
    Language English
    Publishing date 2023-05-05
    Publishing country Switzerland
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2606827-8
    ISSN 1664-3224 ; 1664-3224
    ISSN (online) 1664-3224
    ISSN 1664-3224
    DOI 10.3389/fimmu.2023.1094872
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Role of Plasmapheresis and Extracorporeal Membrane Oxygenation in the Treatment of Leptospirosis Complicated with Pulmonary Hemorrhages

    C. L. Fonseka / S. Lekamwasam

    Journal of Tropical Medicine, Vol

    2018  Volume 2018

    Abstract: Introduction. Leptospirosis is an emerging infectious disease associated with multiorgan involvement and significant morbidity and mortality. Although pulmonary hemorrhage due to leptospirosis has a high fatality, specific treatment options are limited ... ...

    Abstract Introduction. Leptospirosis is an emerging infectious disease associated with multiorgan involvement and significant morbidity and mortality. Although pulmonary hemorrhage due to leptospirosis has a high fatality, specific treatment options are limited and their efficacy is not adequately proven. We opted to find out the current evidence on plasmapheresis and extracorporeal membrane oxygenation (ECMO) in pulmonary hemorrhages due to leptospirosis. Methods. The first search was conducted in PubMed, OVID, Google Scholar, and Cochrane clinical trial registry using keywords “leptospirosis” OR “Leptospira” OR “Weil’s disease” AND “plasmapheresis” OR “plasma exchange” AND “pulmonary hemorrhage” OR “alveolar hemorrhage” OR “lung hemorrhage” and the second search was done using keyword “leptospirosis” OR “Leptospira” OR “Weil’s disease” AND “ECMO” OR “Extracorporeal membrane oxygenation.” The searches were not limited by study design or the date of publication. Only articles written in English were reviewed. Although we intended to include only clinical trials, it was decided later to include other information such as case reports and case series which addressed these treatment modalities. Two authors selected articles independently in a blinded manner using a set of inclusion and exclusion criteria and discrepancies were solved after discussions. Results. The information found was very limited. This included one clinical trial which showed a significant survival benefit with plasmapheresis but the study design had many limitations. Two case reports described the benefit of plasmapheresis in severe leptospirosis with pulmonary hemorrhages. There were eight case reports where ECMO was performed and out of all only one patient has died. One retrospective study on patients with severe leptospirosis mentioned that four out of five patients with pulmonary hemorrhages survived after being treated with ECMO. Conclusions. Current evidence is insufficient to recommend the routine use of plasmapheresis or ECMO for patients ...
    Keywords Arctic medicine. Tropical medicine ; RC955-962
    Subject code 610
    Language English
    Publishing date 2018-01-01T00:00:00Z
    Publisher Hindawi Limited
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  7. Article ; Online: Exploring the association of interleukin polymorphisms with aggression and internalizing behaviors in children and adolescents.

    Pouget, Jennie G / Bryushkova, Lyubov / Koyama, Emiko / Zai, Clement C / Fonseka, Trehani M / Mueller, Daniel / Kennedy, James L / Beitchman, Joseph H

    Brain and behavior

    2022  Volume 12, Issue 11, Page(s) e2753

    Abstract: Background: There is growing evidence that inflammation influences mental health. Blood interleukin levels, which regulate inflammation, have been linked to aggression and internalizing behaviors. We performed a hypothesis-driven genetic study to (1) ... ...

    Abstract Background: There is growing evidence that inflammation influences mental health. Blood interleukin levels, which regulate inflammation, have been linked to aggression and internalizing behaviors. We performed a hypothesis-driven genetic study to (1) evaluate the association of IL1B, IL2, and IL6 gene variants with aggression and internalizing behaviors and (2) explore gene-environment interactions with childhood adversity in a deeply phenotyped childhood-onset aggression sample including 255 cases and 226 controls of European ancestry.
    Methods: We evaluated the association of putative functional and tag SNPs within IL1B, IL2, and IL6 with aggression case status, parent-reported internalizing problems, self-reported anxiety symptoms, and self-reported depressive symptoms in our sample. We also performed exploratory GxE analyses within cases, testing for statistical interaction between interleukin SNP genotype and childhood adversity for depressive symptoms.
    Results: No significant association was observed between any of the interleukin SNPs and childhood-onset aggression. We observed association of IL6 variant rs2069827 with depressive symptoms (p = 7.15×10<sup>-4</sup> ), and trends for an interaction between severe childhood adversity and SNPs in IL1B and IL2 for depressive symptoms.
    Conclusions: Our findings provide preliminary evidence that common variation in IL6 may be associated with depressive symptoms in children and adolescents, and that common variation in interleukin genes may sensitize individuals to the depressogenic effects of traumatic life experiences. Replication in independent samples is needed.
    MeSH term(s) Adolescent ; Child ; Humans ; Aggression ; Inflammation ; Interleukin-2/genetics ; Interleukin-6/genetics ; Polymorphism, Single Nucleotide ; Interleukin-1beta/genetics ; Child Behavior ; Adolescent Behavior
    Chemical Substances Interleukin-2 ; Interleukin-6 ; IL1B protein, human ; IL6 protein, human ; IL2 protein, human ; Interleukin-1beta
    Language English
    Publishing date 2022-09-28
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2623587-0
    ISSN 2162-3279 ; 2162-3279
    ISSN (online) 2162-3279
    ISSN 2162-3279
    DOI 10.1002/brb3.2753
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article: Eosinophilic Gastroenteritis with a Relapsing and Remitting Course with Presence of Autoimmune Antibodies.

    Fonseka, Chathuranga Lakmal / Nanayakkara, Sunali / Singhapura, S D A L / Herath, H M M / Bodinayake, C K

    Case reports in medicine

    2020  Volume 2020, Page(s) 1745834

    Abstract: Background: Eosinophilic gastroenteritis (EGE) is an uncommon disease characterized by eosinophilic infiltration of the digestive tract, which occurs due to an uncertain aetiology. Although autoimmune diseases can later present as EGE, it is unusual for ...

    Abstract Background: Eosinophilic gastroenteritis (EGE) is an uncommon disease characterized by eosinophilic infiltration of the digestive tract, which occurs due to an uncertain aetiology. Although autoimmune diseases can later present as EGE, it is unusual for EGE to have positive autoimmune antibodies without the presence of an overt autoimmune disease.
    Conclusion: EGE presenting as peripheral blood and ascitic fluid eosinophilia with the presence of pleural and/or peritoneal effusions is uncommon. Eosinophilic gastroenteritis can be associated with autoantibody positivity without any evidence of overt autoimmune disease manifestations. Elimination diet can be used as a potential option to prevent recurrences of EGE.
    Language English
    Publishing date 2020-08-18
    Publishing country United States
    Document type Case Reports
    ZDB-ID 2502642-2
    ISSN 1687-9635 ; 1687-9627
    ISSN (online) 1687-9635
    ISSN 1687-9627
    DOI 10.1155/2020/1745834
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article: Pulmonary Onset of Adult Onset Still's Disease Complicated with Kikuchi Lymphadenitis.

    Kodithuwakku, G D E / Fonseka, C L / Nanayakkara, S / Herath, H M M

    Case reports in rheumatology

    2020  Volume 2020, Page(s) 8327068

    Abstract: Background: Adult onset Still's disease (AOSD) is a rare inflammatory disorder with a variety of clinical presentations. Even though pneumonitis and pleurisy are known to occur in AOSD, pulmonary onset presentations are exceedingly rare. : Conclusion!# ...

    Abstract Background: Adult onset Still's disease (AOSD) is a rare inflammatory disorder with a variety of clinical presentations. Even though pneumonitis and pleurisy are known to occur in AOSD, pulmonary onset presentations are exceedingly rare.
    Conclusion: Non-infective causes of pneumonitis should be suspected in the setting of poorly resolving pneumonias, especially when microbiological and serological investigations does not support an infective etiology. Presence of systemic symptoms with arthralgia, rash, and disproportionately elevated ferritin level supports the diagnosis of AOSD. Kikuchi lymphadenitis is a reported association with AOSD, and there could be a causal link between the two disorders.
    Language English
    Publishing date 2020-02-19
    Publishing country United States
    Document type Case Reports
    ZDB-ID 2666708-3
    ISSN 2090-6897 ; 2090-6889
    ISSN (online) 2090-6897
    ISSN 2090-6889
    DOI 10.1155/2020/8327068
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Unfolding and Translocation of Knotted Proteins by Clp Biological Nanomachines: Synergistic Contribution of Primary Sequence and Topology Revealed by Molecular Dynamics Simulations.

    Fonseka, Hewafonsekage Yasan Y / Javidi, Alex / Oliveira, Luiz F L / Micheletti, Cristian / Stan, George

    The journal of physical chemistry. B

    2021  Volume 125, Issue 27, Page(s) 7335–7350

    Abstract: We use Langevin dynamics simulations to model, at an atomistic resolution, how various natively knotted proteins are unfolded in repeated allosteric translocating cycles of the ClpY ATPase. We consider proteins representative of different topologies, ... ...

    Abstract We use Langevin dynamics simulations to model, at an atomistic resolution, how various natively knotted proteins are unfolded in repeated allosteric translocating cycles of the ClpY ATPase. We consider proteins representative of different topologies, from the simplest knot (trefoil 3
    MeSH term(s) Molecular Dynamics Simulation ; Peptides ; Protein Conformation ; Protein Domains ; Protein Folding ; Proteins
    Chemical Substances Peptides ; Proteins
    Language English
    Publishing date 2021-06-10
    Publishing country United States
    Document type Journal Article ; Research Support, U.S. Gov't, Non-P.H.S.
    ISSN 1520-5207
    ISSN (online) 1520-5207
    DOI 10.1021/acs.jpcb.1c00898
    Database MEDical Literature Analysis and Retrieval System OnLINE

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