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  1. Book: Atlas of Amputations and Limb Deficiencies

    Krajbich, Joseph Ivan / Pinzur, Michael S. / Potter, Benjamin Kyle / Stevens, Phillip M.

    Surgical, Prosthetic, and Rehabilitation Principles

    (AAOS - American Academy of Orthopaedic Surgeons)

    2023  

    Series title AAOS - American Academy of Orthopaedic Surgeons
    Language English
    Size 1029 p.
    Edition 5
    Publisher Lippincott Williams
    Document type Book
    Note PDA Manuell_24
    Format 215 x 277 x 45
    ISBN 9781975184452 ; 1975184459
    Database PDA

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  2. Article ; Online: Single-cell RNA sequencing for the study of development, physiology and disease.

    Potter, S Steven

    Nature reviews. Nephrology

    2018  Volume 14, Issue 8, Page(s) 479–492

    Abstract: An ongoing technological revolution is continually improving our ability to carry out very high-resolution studies of gene expression patterns. Current technology enables the global gene expression profiles of single cells to be defined, facilitating ... ...

    Abstract An ongoing technological revolution is continually improving our ability to carry out very high-resolution studies of gene expression patterns. Current technology enables the global gene expression profiles of single cells to be defined, facilitating dissection of heterogeneity in cell populations that was previously hidden. In contrast to gene expression studies that use bulk RNA samples and provide only a virtual average of the diverse constituent cells, single-cell studies enable the molecular distinction of all cell types within a complex population mix, such as a tumour or developing organ. For instance, single-cell gene expression profiling has contributed to improved understanding of how histologically identical, adjacent cells make different differentiation decisions during development. Beyond development, single-cell gene expression studies have enabled the characteristics of previously known cell types to be more fully defined and facilitated the identification of novel categories of cells, contributing to improvements in our understanding of both normal and disease-related physiological processes and leading to the identification of new treatment approaches. Although limitations remain to be overcome, technology for the analysis of single-cell gene expression patterns is improving rapidly and beginning to provide a detailed atlas of the gene expression patterns of all cell types in the human body.
    MeSH term(s) Animals ; Cell Lineage ; Gene Expression Profiling/methods ; Humans ; Kidney Diseases/genetics ; Neoplasms/genetics ; Neoplasms/metabolism ; Organogenesis/genetics ; Sequence Analysis, RNA/methods ; Single-Cell Analysis
    Language English
    Publishing date 2018-05-26
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 2490366-8
    ISSN 1759-507X ; 1759-5061
    ISSN (online) 1759-507X
    ISSN 1759-5061
    DOI 10.1038/s41581-018-0021-7
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Dissociation of Tissues for Single-Cell Analysis.

    Potter, Andrew S / Steven Potter, S

    Methods in molecular biology (Clifton, N.J.)

    2019  Volume 1926, Page(s) 55–62

    Abstract: It is now a routine to carry out single-cell RNA-Seq to define the gene expression patterns of thousands of cells, thereby revolutionizing many areas of research. Projects are underway to use these techniques to create an atlas of the expressed genes in ... ...

    Abstract It is now a routine to carry out single-cell RNA-Seq to define the gene expression patterns of thousands of cells, thereby revolutionizing many areas of research. Projects are underway to use these techniques to create an atlas of the expressed genes in all cell types of the human body. Here we describe cold-active protease methods for single-cell dissociation of organs and tissues that better preserve the in vivo gene expression patterns.
    MeSH term(s) Gene Expression Profiling/methods ; Humans ; Sequence Analysis, RNA/methods ; Single-Cell Analysis/methods
    Language English
    Publishing date 2019-02-11
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ISSN 1940-6029
    ISSN (online) 1940-6029
    DOI 10.1007/978-1-4939-9021-4_5
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: If there were an effective pharmacotherapy for cocaine use disorder, what would it do?

    Shoptaw, Steven / Trivedi, Madhukar / Potter, Jennifer S

    Addiction (Abingdon, England)

    2020  Volume 116, Issue 4, Page(s) 714–715

    MeSH term(s) Cocaine ; Cocaine-Related Disorders/drug therapy ; Humans ; Substance-Related Disorders
    Chemical Substances Cocaine (I5Y540LHVR)
    Language English
    Publishing date 2020-12-02
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Comment
    ZDB-ID 1141051-6
    ISSN 1360-0443 ; 0965-2140
    ISSN (online) 1360-0443
    ISSN 0965-2140
    DOI 10.1111/add.15310
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Profound Healing of a Quadriceps Tendon Tear Following Intratendinous Minimally Invasive Platelet-Rich Plasma Injection.

    Dixon, Grant / Potter, Steven / Shapiro, Mark S / Santa Maria, Emma / Schmidt, David / Santa Maria, Daniel

    Current sports medicine reports

    2023  Volume 22, Issue 5, Page(s) 164–167

    MeSH term(s) Humans ; Rupture ; Wound Healing ; Tendons ; Platelet-Rich Plasma
    Language English
    Publishing date 2023-05-01
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2080040-X
    ISSN 1537-8918 ; 1537-890X
    ISSN (online) 1537-8918
    ISSN 1537-890X
    DOI 10.1249/JSR.0000000000001062
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Single-cell sequencing dissects the transcriptional identity of activated fibroblasts and identifies novel persistent distal tubular injury patterns in kidney fibrosis.

    Rudman-Melnick, Valeria / Adam, Mike / Stowers, Kaitlynn / Potter, Andrew / Ma, Qing / Chokshi, Saagar M / Vanhoutte, Davy / Valiente-Alandi, Iñigo / Lindquist, Diana M / Nieman, Michelle L / Kofron, J Matthew / Chung, Eunah / Park, Joo-Seop / Potter, S Steven / Devarajan, Prasad

    Scientific reports

    2024  Volume 14, Issue 1, Page(s) 439

    Abstract: Examining kidney fibrosis is crucial for mechanistic understanding and developing targeted strategies against chronic kidney disease (CKD). Persistent fibroblast activation and tubular epithelial cell (TEC) injury are key CKD contributors. However, ... ...

    Abstract Examining kidney fibrosis is crucial for mechanistic understanding and developing targeted strategies against chronic kidney disease (CKD). Persistent fibroblast activation and tubular epithelial cell (TEC) injury are key CKD contributors. However, cellular and transcriptional landscapes of CKD and specific activated kidney fibroblast clusters remain elusive. Here, we analyzed single cell transcriptomic profiles of two clinically relevant kidney fibrosis models which induced robust kidney parenchymal remodeling. We dissected the molecular and cellular landscapes of kidney stroma and newly identified three distinctive fibroblast clusters with "secretory", "contractile" and "vascular" transcriptional enrichments. Also, both injuries generated failed repair TECs (frTECs) characterized by decline of mature epithelial markers and elevation of stromal and injury markers. Notably, frTECs shared transcriptional identity with distal nephron segments of the embryonic kidney. Moreover, we identified that both models exhibited robust and previously unrecognized distal spatial pattern of TEC injury, outlined by persistent elevation of renal TEC injury markers including Krt8 and Vcam1, while the surviving proximal tubules (PTs) showed restored transcriptional signature. We also found that long-term kidney injuries activated a prominent nephrogenic signature, including Sox4 and Hox gene elevation, which prevailed in the distal tubular segments. Our findings might advance understanding of and targeted intervention in fibrotic kidney disease.
    MeSH term(s) Humans ; Kidney Tubules/pathology ; Kidney/pathology ; Renal Insufficiency, Chronic/genetics ; Renal Insufficiency, Chronic/pathology ; Fibroblasts/physiology ; Fibrosis
    Language English
    Publishing date 2024-01-03
    Publishing country England
    Document type Journal Article
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-023-50195-0
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: HoxD transcription factors define monosynaptic sensory-motor specificity in the developing spinal cord.

    Imai, Fumiyasu / Adam, Mike / Potter, S Steven / Yoshida, Yutaka

    Development (Cambridge, England)

    2021  Volume 148, Issue 12

    Abstract: The specificity of monosynaptic connections between proprioceptive sensory neurons and their recipient spinal motor neurons depends on multiple factors, including motor neuron positioning and dendrite morphology, axon projection patterns of ... ...

    Abstract The specificity of monosynaptic connections between proprioceptive sensory neurons and their recipient spinal motor neurons depends on multiple factors, including motor neuron positioning and dendrite morphology, axon projection patterns of proprioceptive sensory neurons in the spinal cord, and the ligand-receptor molecules involved in cell-to-cell recognition. However, with few exceptions, the transcription factors engaged in this process are poorly characterized. Here, we show that members of the HoxD family of transcription factors play a crucial role in the specificity of monosynaptic sensory-motor connections. Mice lacking Hoxd9, Hoxd10 and Hoxd11 exhibit defects in locomotion but have no obvious defects in motor neuron positioning or dendrite morphology through the medio-lateral and rostro-caudal axes. However, we found that quadriceps motor neurons in these mice show aberrant axon development and receive inappropriate inputs from proprioceptive sensory axons innervating the obturator muscle. These genetic studies demonstrate that the HoxD transcription factors play an integral role in the synaptic specificity of monosynaptic sensory-motor connections in the developing spinal cord.
    MeSH term(s) Animals ; Axons/metabolism ; Cell Differentiation/genetics ; DNA-Binding Proteins/genetics ; DNA-Binding Proteins/metabolism ; Gene Expression Regulation ; Mice ; Models, Biological ; Motor Neurons/cytology ; Motor Neurons/metabolism ; Organ Specificity ; Protein Isoforms ; Sensory Receptor Cells/cytology ; Sensory Receptor Cells/metabolism ; Spinal Cord/metabolism ; Transcription Factors/genetics ; Transcription Factors/metabolism
    Chemical Substances DNA-Binding Proteins ; Protein Isoforms ; Transcription Factors
    Language English
    Publishing date 2021-06-15
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 90607-4
    ISSN 1477-9129 ; 0950-1991
    ISSN (online) 1477-9129
    ISSN 0950-1991
    DOI 10.1242/dev.191122
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Molecular Anatomy of Palate Development.

    Potter, Andrew S / Potter, S Steven

    PloS one

    2015  Volume 10, Issue 7, Page(s) e0132662

    Abstract: The NIH FACEBASE consortium was established in part to create a central resource for craniofacial researchers. One purpose is to provide a molecular anatomy of craniofacial development. To this end we have used a combination of laser capture ... ...

    Abstract The NIH FACEBASE consortium was established in part to create a central resource for craniofacial researchers. One purpose is to provide a molecular anatomy of craniofacial development. To this end we have used a combination of laser capture microdissection and RNA-Seq to define the gene expression programs driving development of the murine palate. We focused on the E14.5 palate, soon after medial fusion of the two palatal shelves. The palate was divided into multiple compartments, including both medial and lateral, as well as oral and nasal, for both the anterior and posterior domains. A total of 25 RNA-Seq datasets were generated. The results provide a comprehensive view of the region specific expression of all transcription factors, growth factors and receptors. Paracrine interactions can be inferred from flanking compartment growth factor/receptor expression patterns. The results are validated primarily through very high concordance with extensive previously published gene expression data for the developing palate. In addition selected immunostain validations were carried out. In conclusion, this report provides an RNA-Seq based atlas of gene expression patterns driving palate development at microanatomic resolution. This FACEBASE resource is designed to promote discovery by the craniofacial research community.
    MeSH term(s) Animals ; Cleft Palate/genetics ; Gene Expression Regulation, Developmental ; Mice ; Palate/anatomy & histology ; Palate/growth & development
    Language English
    Publishing date 2015-07-13
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Validation Study
    ISSN 1932-6203
    ISSN (online) 1932-6203
    DOI 10.1371/journal.pone.0132662
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: A bigenic mouse model of FSGS reveals perturbed pathways in podocytes, mesangial cells and endothelial cells.

    Potter, Andrew S / Drake, Keri / Brunskill, Eric W / Potter, S Steven

    PloS one

    2019  Volume 14, Issue 8, Page(s) e0216261

    Abstract: Focal segmental glomerulosclerosis is a major cause of end stage renal disease. Many patients prove unresponsive to available therapies. An improved understanding of the molecular basis of the disease process could provide insights leading to novel ... ...

    Abstract Focal segmental glomerulosclerosis is a major cause of end stage renal disease. Many patients prove unresponsive to available therapies. An improved understanding of the molecular basis of the disease process could provide insights leading to novel therapeutic approaches. In this study we carried out an RNA-seq analysis of the altered gene expression patterns of podocytes, mesangial cells and glomerular endothelial cells of the bigenic Cd2ap+/-, Fyn-/- mutant mouse model of FSGS. In the podocytes we observed upregulation of many genes related to the Tgfβ family/pathway, including Gdnf, Tgfβ1, Tgfβ2, Snai2, Vegfb, Bmp4, and Tnc. The mutant podocytes also showed upregulation of Acta2, a marker of smooth muscle and associated with myofibroblasts, which are implicated in driving fibrosis. GO analysis of the podocyte upregulated genes identified elevated protein kinase activity, increased expression of growth factors, and negative regulation of cell adhesion, perhaps related to the observed podocyte loss. Both podocytes and mesangial cells showed strong upregulation of aldehyde dehydrogenase genes involved in the synthesis of retinoic acid. Similarly, the Cd2ap+/-, Fyn-/- mesangial cells, as well as podocytes in other genetic models, and the glomeruli of human FSGS patients, all show upregulation of the serine protease Prss23, with the common thread suggesting important functionality. Another gene with strong upregulation in the Cd2ap+/-, Fyn-/- mutant mesangial cells as well as multiple other mutant mouse models of FSGS was thrombospondin, which activates the secreted inactive form of Tgfβ. The Cd2ap+/-, Fyn-/- mutant endothelial cells showed elevated expression of genes involved in cell proliferation, angioblast migration, angiogenesis, and neovasculature, all consistent with the formation of new blood vessels in the diseased glomerulus. The resulting global definition of the perturbed molecular pathways in the three major cell types of the mutant glomerulus provide deeper understanding of the molecular pathogenic pathways.
    MeSH term(s) Adaptor Proteins, Signal Transducing/genetics ; Animals ; Cytoskeletal Proteins/genetics ; Disease Models, Animal ; Endothelial Cells/pathology ; Glomerulosclerosis, Focal Segmental/drug therapy ; Glomerulosclerosis, Focal Segmental/genetics ; Glomerulosclerosis, Focal Segmental/pathology ; Mesangial Cells/pathology ; Mice ; Molecular Targeted Therapy ; Mutation ; Phenotype ; Podocytes/pathology ; Proto-Oncogene Proteins c-fyn/genetics
    Chemical Substances Adaptor Proteins, Signal Transducing ; CD2-associated protein ; Cytoskeletal Proteins ; Fyn protein, mouse (EC 2.7.10.2) ; Proto-Oncogene Proteins c-fyn (EC 2.7.10.2)
    Language English
    Publishing date 2019-08-28
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ISSN 1932-6203
    ISSN (online) 1932-6203
    DOI 10.1371/journal.pone.0216261
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: A gender-based secondary analysis of the ADAPT-2 combination naltrexone and bupropion treatment for methamphetamine use disorder trial.

    Levander, Ximena A / Carmody, Thomas / Cook, Ryan R / Potter, Jennifer S / Trivedi, Madhukar H / Korthuis, Philip Todd / Shoptaw, Steven

    Addiction (Abingdon, England)

    2023  Volume 118, Issue 7, Page(s) 1320–1328

    Abstract: Background and aims: Socio-cultural (gender) and biological (sex)-based differences contribute to psychostimulant susceptibility, potentially affecting treatment responsiveness among women with methamphetamine use disorder (MUD). The aims were to ... ...

    Abstract Background and aims: Socio-cultural (gender) and biological (sex)-based differences contribute to psychostimulant susceptibility, potentially affecting treatment responsiveness among women with methamphetamine use disorder (MUD). The aims were to measure (i) how women with MUD independently and compared with men respond to treatment versus placebo and (ii) among women, how the hormonal method of contraception (HMC) affects treatment responsiveness.
    Design: This was a secondary analysis of ADAPT-2, a randomized, double-blind, placebo-controlled, multicenter, two-stage sequential parallel comparison design trial.
    Setting: United States.
    Participants: This study comprised 126 women (403 total participants); average age = 40.1 years (standard deviation = 9.6) with moderate to severe MUD.
    Interventions: Interventions were combination intramuscular naltrexone (380 mg/3 weeks) and oral bupropion (450 mg daily) versus placebo.
    Measurements: Treatment response was measured using a minimum of three of four negative methamphetamine urine drug tests during the last 2 weeks of each stage; treatment effect was the difference between weighted treatment responses of each stage.
    Findings: At baseline, women used methamphetamine intravenously fewer days than men [15.4 versus 23.1% days, P = 0.050, difference = -7.7, 95% confidence interval (CI) = -15.0 to -0.3] and more women than men had anxiety (59.5 versus 47.6%, P = 0.027, difference = 11.9%, 95% CI = 1.5 to 22.3%). Of 113 (89.7%) women capable of pregnancy, 31 (27.4%) used HMC. In Stage 1 29% and Stage 2 5.6% of women on treatment had a response compared with 3.2% and 0% on placebo, respectively. A treatment effect was found independently for females and males (P < 0.001); with no between-gender treatment effect (0.144 females versus 0.100 males; P = 0.363, difference = 0.044, 95% CI = -0.050 to 0.137). Treatment effect did not differ by HMC use (0.156 HMC versus 0.128 none; P = 0.769, difference = 0.028, 95% CI -0.157 to 0.212).
    Conclusions: Women with methamphetamine use disorder receiving combined intramuscular naltrexone and oral bupropion treatment achieve greater treatment response than placebo. Treatment effect does not differ by HMC.
    MeSH term(s) Male ; Pregnancy ; Humans ; Female ; Adult ; Methamphetamine ; Naltrexone ; Bupropion/therapeutic use ; Central Nervous System Stimulants/therapeutic use ; Drug Therapy, Combination ; Double-Blind Method
    Chemical Substances Methamphetamine (44RAL3456C) ; Naltrexone (5S6W795CQM) ; Bupropion (01ZG3TPX31) ; Central Nervous System Stimulants
    Language English
    Publishing date 2023-03-02
    Publishing country England
    Document type Randomized Controlled Trial ; Multicenter Study ; Journal Article ; Research Support, N.I.H., Extramural ; Research Support, U.S. Gov't, P.H.S.
    ZDB-ID 1141051-6
    ISSN 1360-0443 ; 0965-2140
    ISSN (online) 1360-0443
    ISSN 0965-2140
    DOI 10.1111/add.16163
    Database MEDical Literature Analysis and Retrieval System OnLINE

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