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  1. Article ; Online: Electronic spectroscopy of gemcitabine and derivatives for possible dual-action photodynamic therapy applications.

    Abdelgawwad, Abdelazim M A / Roca-Sanjuán, Daniel / Francés-Monerris, Antonio

    The Journal of chemical physics

    2023  Volume 159, Issue 22

    Abstract: In this paper, we explore the molecular basis of combining photodynamic therapy (PDT), a light-triggered targeted anticancer therapy, with the traditional chemotherapeutic properties of the well-known cytotoxic agent gemcitabine. A photosensitizer ... ...

    Abstract In this paper, we explore the molecular basis of combining photodynamic therapy (PDT), a light-triggered targeted anticancer therapy, with the traditional chemotherapeutic properties of the well-known cytotoxic agent gemcitabine. A photosensitizer prerequisite is significant absorption of biocompatible light in the visible/near IR range, ideally between 600 and 1000 nm. We use highly accurate multiconfigurational CASSCF/MS-CASPT2/MM and TD-DFT methodologies to determine the absorption properties of a series of gemcitabine derivatives with the goal of red-shifting the UV absorption band toward the visible region and facilitating triplet state population. The choice of the substitutions and, thus, the rational design is based on important biochemical criteria and on derivatives whose synthesis is reported in the literature. The modifications tackled in this paper consist of: (i) substitution of the oxygen atom at O2 position with heavier atoms (O → S and O → Se) to red shift the absorption band and increase the spin-orbit coupling, (ii) addition of a lipophilic chain at the N7 position to enhance transport into cancer cells and slow down gemcitabine metabolism, and (iii) attachment of aromatic systems at C5 position to enhance red shift further. Results indicate that the combination of these three chemical modifications markedly shifts the absorption spectrum toward the 500 nm region and beyond and drastically increases spin-orbit coupling values, two key PDT requirements. The obtained theoretical predictions encourage biological studies to further develop this anticancer approach.
    MeSH term(s) Gemcitabine ; Photosensitizing Agents/chemistry ; Spectrum Analysis ; Photochemotherapy ; Electronics
    Chemical Substances Gemcitabine ; Photosensitizing Agents
    Language English
    Publishing date 2023-10-05
    Publishing country United States
    Document type Journal Article
    ZDB-ID 3113-6
    ISSN 1089-7690 ; 0021-9606
    ISSN (online) 1089-7690
    ISSN 0021-9606
    DOI 10.1063/5.0170949
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  2. Article ; Online: A multiscale free energy method reveals an unprecedented photoactivation of a bimetallic Os(II)-Pt(II) dual anticancer agent.

    Alberto, Marta E / Francés-Monerris, Antonio

    Physical chemistry chemical physics : PCCP

    2022  Volume 24, Issue 32, Page(s) 19584–19594

    Abstract: The photoreactivity of relatively large transition metal complexes is often limited to the description of the static potential energy surfaces of the involved electronic states. While useful to grasp some physical grounds of the photoinduced molecular ... ...

    Abstract The photoreactivity of relatively large transition metal complexes is often limited to the description of the static potential energy surfaces of the involved electronic states. While useful to grasp some physical grounds of the photoinduced molecular responses, this approach does not statistically sample the multiple molecular degrees of freedom of the systems under investigation, which grow significantly if we consider the explicit coupling with the environment, and does not consider dynamic effects. The problem is even more complex if the reactivity takes place in the excited state. The present work uses state-of-the-art multiscale QM/MM dynamics to describe the photoactivation of a Pt(II)-unit of an
    MeSH term(s) Antineoplastic Agents/chemistry ; Coordination Complexes/chemistry ; Photochemistry ; Photochemotherapy ; Transition Elements/chemistry
    Chemical Substances Antineoplastic Agents ; Coordination Complexes ; Transition Elements
    Language English
    Publishing date 2022-08-17
    Publishing country England
    Document type Journal Article
    ZDB-ID 1476244-4
    ISSN 1463-9084 ; 1463-9076
    ISSN (online) 1463-9084
    ISSN 1463-9076
    DOI 10.1039/d2cp02128e
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  3. Article ; Online: Spatial and Temporal Resolution of the Oxygen-Independent Photoinduced DNA Interstrand Cross-Linking by a Nitroimidazole Derivative.

    Abdelgawwad, Abdelazim M A / Monari, Antonio / Tuñón, Iñaki / Francés-Monerris, Antonio

    Journal of chemical information and modeling

    2022  Volume 62, Issue 13, Page(s) 3239–3252

    Abstract: DNA damage is ubiquitous in nature and is at the basis of emergent treatments such as photodynamic therapy, which is based on the activation of highly oxidative reactive oxygen species by photosensitizing ... ...

    Abstract DNA damage is ubiquitous in nature and is at the basis of emergent treatments such as photodynamic therapy, which is based on the activation of highly oxidative reactive oxygen species by photosensitizing O
    MeSH term(s) Base Pairing ; DNA/chemistry ; Nitroimidazoles/pharmacology ; Oxygen ; Photosensitizing Agents/chemistry ; Photosensitizing Agents/pharmacology
    Chemical Substances Nitroimidazoles ; Photosensitizing Agents ; DNA (9007-49-2) ; Oxygen (S88TT14065)
    Language English
    Publishing date 2022-06-30
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 190019-5
    ISSN 1549-960X ; 0095-2338
    ISSN (online) 1549-960X
    ISSN 0095-2338
    DOI 10.1021/acs.jcim.2c00460
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Substituent-Induced Control of

    Carrillo, Ulises / Francés-Monerris, Antonio / Marri, Anil Reddy / Cebrián, Cristina / Gros, Philippe C

    ACS organic & inorganic Au

    2022  Volume 2, Issue 6, Page(s) 525–536

    Abstract: The stereoselective synthesis of geometrical iron(II) complexes bearing azine-NHC ligands is described. Facial and meridional selectivity is achieved as a function of the steric demand of the azine unit, with no remarkable influence of the carbene nature. ...

    Abstract The stereoselective synthesis of geometrical iron(II) complexes bearing azine-NHC ligands is described. Facial and meridional selectivity is achieved as a function of the steric demand of the azine unit, with no remarkable influence of the carbene nature. More specifically, meridional complexes are obtained upon selecting bulky 5-mesityl-substituted pyridyl coordinating units. Unexpectedly, increase of the steric hindrance in the α position with respect to the N coordinating atom results in an exclusive facial configuration, which is in stark contrast to the meridional selectivity induced by other reported α-substituted bidentate ligands. Investigation of the structure and the optical and electrochemical properties of the here-described complexes has revealed the non-negligible effect of the
    Language English
    Publishing date 2022-09-28
    Publishing country United States
    Document type Journal Article
    ISSN 2694-247X
    ISSN (online) 2694-247X
    DOI 10.1021/acsorginorgau.2c00038
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  5. Article ; Online: Hypoxia-Selective Dissociation Mechanism of a Nitroimidazole Nucleoside in a DNA Environment.

    Francés-Monerris, Antonio / Tuñón, Iñaki / Monari, Antonio

    The journal of physical chemistry letters

    2019  Volume 10, Issue 21, Page(s) 6750–6754

    Abstract: Photodynamic therapy is a promising approach to treat a variety of superficial tumors and other diseases. One of its major limitations arises from its dependence on molecular oxygen, which decreases the efficiency of the therapy in hypoxia conditions ... ...

    Abstract Photodynamic therapy is a promising approach to treat a variety of superficial tumors and other diseases. One of its major limitations arises from its dependence on molecular oxygen, which decreases the efficiency of the therapy in hypoxia conditions commonly developed by solid tumors. The present contribution reveals the molecular mechanism of a modified thymine bearing a nitroimidazole substituent, a photosensitizer able to produce highly harmful interstrand cross-links in the DNA double strand after irradiation selectively in absence of oxygen. The mechanism is resolved at a fully atomistic and electronic level relying on quantum mechanics (CASPT2, coupled-cluster, DFT, and TD-DFT methods), classical molecular dynamics, and advanced biased QM/MM simulations, revealing an energy penalty of ∼8 kcal/mol for the anionic nitromidazole release. Our findings indicate that the global interstrand cross-link production is driven by a combination of multiple factors, namely, the reverse energy penalty, the diffusion of the nitroimidazole anion, and the further reactivity of the formed thymine radical. On the basis of these results, we also suggest some possible strategies to improve the efficiency of interstrand cross-link production.
    MeSH term(s) DNA/chemistry ; DNA/metabolism ; Hydrogen Bonding ; Molecular Dynamics Simulation ; Nitroimidazoles/chemistry ; Nucleic Acid Conformation ; Photosensitizing Agents/chemistry ; Quantum Theory
    Chemical Substances Nitroimidazoles ; Photosensitizing Agents ; DNA (9007-49-2)
    Language English
    Publishing date 2019-10-17
    Publishing country United States
    Document type Journal Article
    ISSN 1948-7185
    ISSN (online) 1948-7185
    DOI 10.1021/acs.jpclett.9b02760
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  6. Article ; Online: Photoinduced DNA Lesions in Dormant Bacteria: The Peculiar Route Leading to Spore Photoproducts Characterized by Multiscale Molecular Dynamics*.

    Francés-Monerris, Antonio / Hognon, Cécilia / Douki, Thierry / Monari, Antonio

    Chemistry (Weinheim an der Bergstrasse, Germany)

    2020  Volume 26, Issue 62, Page(s) 14236–14241

    Abstract: Some bacterial species enter a dormant state in the form of spores to resist to unfavorable external conditions. Spores are resistant to a wide series of stress agents, including UV radiation, and can last for tens to hundreds of years. Due to the ... ...

    Abstract Some bacterial species enter a dormant state in the form of spores to resist to unfavorable external conditions. Spores are resistant to a wide series of stress agents, including UV radiation, and can last for tens to hundreds of years. Due to the suspension of biological functions, such as DNA repair, they accumulate DNA damage upon exposure to UV radiation. Differently from active organisms, the most common DNA photoproducts in spores are not cyclobutane pyrimidine dimers, but rather the so-called spore photoproducts. This noncanonical photochemistry results from the dry state of DNA and its binding to small, acid-soluble proteins that drastically modify the structure and photoreactivity of the nucleic acid. Herein, multiscale molecular dynamics simulations, including extended classical molecular dynamics and quantum mechanics/molecular mechanics based dynamics, are used to elucidate the coupling of electronic and structural factors that lead to this photochemical outcome. In particular, the well-described impact of the peculiar DNA environment found in spores on the favored formation of the spore photoproduct, given the small free energy barrier found for this path, is rationalized. Meanwhile, the specific organization of spore DNA precludes the photochemical path that leads to cyclobutane pyrimidine dimer formation.
    MeSH term(s) DNA/radiation effects ; DNA Damage ; Molecular Dynamics Simulation ; Pyrimidine Dimers/chemistry ; Spores, Bacterial/chemistry ; Ultraviolet Rays
    Chemical Substances Pyrimidine Dimers ; DNA (9007-49-2)
    Language English
    Publishing date 2020-09-30
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 1478547-X
    ISSN 1521-3765 ; 0947-6539
    ISSN (online) 1521-3765
    ISSN 0947-6539
    DOI 10.1002/chem.202002484
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  7. Article ; Online: Photochemical and thermochemical pathways to S

    Francés-Monerris, Antonio / Carmona-García, Javier / Trabelsi, Tarek / Saiz-Lopez, Alfonso / Lyons, James R / Francisco, Joseph S / Roca-Sanjuán, Daniel

    Nature communications

    2022  Volume 13, Issue 1, Page(s) 4425

    Abstract: Polysulfur species have been proposed to be the unknown near-UV absorber in the atmosphere of Venus. Recent work argues that photolysis of one of the (SO) ...

    Abstract Polysulfur species have been proposed to be the unknown near-UV absorber in the atmosphere of Venus. Recent work argues that photolysis of one of the (SO)
    Language English
    Publishing date 2022-07-30
    Publishing country England
    Document type Journal Article
    ZDB-ID 2553671-0
    ISSN 2041-1723 ; 2041-1723
    ISSN (online) 2041-1723
    ISSN 2041-1723
    DOI 10.1038/s41467-022-32170-x
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  8. Article ; Online: Photoinduced intersystem crossing in DNA oxidative lesions and epigenetic intermediates.

    Francés-Monerris, Antonio / Lineros-Rosa, Mauricio / Miranda, Miguel Angel / Lhiaubet-Vallet, Virginie / Monari, Antonio

    Chemical communications (Cambridge, England)

    2020  Volume 56, Issue 32, Page(s) 4404–4407

    Abstract: The propensity of 5-formyluracil and 5-formylcytosine, i.e. oxidative lesions and epigenetic intermediates, in acting as intrinsic DNA photosensitizers is unraveled by using a combination of molecular modeling, simulation and spectroscopy. Exploration of ...

    Abstract The propensity of 5-formyluracil and 5-formylcytosine, i.e. oxidative lesions and epigenetic intermediates, in acting as intrinsic DNA photosensitizers is unraveled by using a combination of molecular modeling, simulation and spectroscopy. Exploration of potential energy surfaces and non-adiabatic dynamics confirm a higher intersystem crossing rate for 5-formyluracil, whereas the kinetic models evidence different equilibria in the excited states for both compounds.
    MeSH term(s) Computer Simulation ; Cytosine/analogs & derivatives ; Cytosine/toxicity ; DNA/chemistry ; DNA/genetics ; DNA/radiation effects ; Epigenesis, Genetic/genetics ; Humans ; Kinetics ; Light ; Models, Molecular ; Mutagens/toxicity ; Oxidation-Reduction ; Uracil/analogs & derivatives ; Uracil/toxicity
    Chemical Substances 5-formylcytosine ; Mutagens ; 5-formyluracil (1195-08-0) ; Uracil (56HH86ZVCT) ; Cytosine (8J337D1HZY) ; DNA (9007-49-2)
    Language English
    Publishing date 2020-04-02
    Publishing country England
    Document type Journal Article
    ZDB-ID 1472881-3
    ISSN 1364-548X ; 1359-7345 ; 0009-241X
    ISSN (online) 1364-548X
    ISSN 1359-7345 ; 0009-241X
    DOI 10.1039/d0cc01132k
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  9. Article ; Online: Trans-to-cis photoisomerization of cyclocurcumin in different environments rationalized by computational photochemistry.

    Marazzi, Marco / Francés-Monerris, Antonio / Mourer, Maxime / Pasc, Andreea / Monari, Antonio

    Physical chemistry chemical physics : PCCP

    2020  Volume 22, Issue 8, Page(s) 4749–4757

    Abstract: Cyclocurcumin is a turmeric component that has attracted much less attention compared to the well-known curcumin. In spite of the less deep characterization of its properties, cyclocurcumin has shown promising anticancer effects when used in combination ... ...

    Abstract Cyclocurcumin is a turmeric component that has attracted much less attention compared to the well-known curcumin. In spite of the less deep characterization of its properties, cyclocurcumin has shown promising anticancer effects when used in combination with curcumin. Especially, due to its peculiar molecular structure, cyclocurcumin can be regarded as an almost ideal photoswitch, whose capabilities can also be exploited for relevant biological applications. Here, by means of state-of-the-art computational methods for electronic excited-state calculations (TD-DFT, MS-CASPT2, and XMS-CASPT2), we analyze in detail the absorption and photoisomerization pathways leading from the more stable trans isomer to the cis one. The different molecular surroundings, taken into account by means of the electrostatic solvent effect and compared with available experimental data, have been found to be critical in describing the fate of irradiated cyclocurcumin: when in non-polar environments, an excited state barrier prevents photoisomerization and favours fluorescence, whereas in polar solvents, an almost barrierless path results in a striking decrease of fluorescence, opening the way toward a crossing region with the ground state and thus funneling the photoproduction of the cis isomer.
    Language English
    Publishing date 2020-02-14
    Publishing country England
    Document type Journal Article
    ZDB-ID 1476244-4
    ISSN 1463-9084 ; 1463-9076
    ISSN (online) 1463-9084
    ISSN 1463-9076
    DOI 10.1039/c9cp06565b
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  10. Article ; Online: Experimental and theoretical studies on thymine photodimerization mediated by oxidatively generated DNA lesions and epigenetic intermediates.

    Lineros-Rosa, Mauricio / Francés-Monerris, Antonio / Monari, Antonio / Miranda, Miguel Angel / Lhiaubet-Vallet, Virginie

    Physical chemistry chemical physics : PCCP

    2020  Volume 22, Issue 44, Page(s) 25661–25668

    Abstract: Interaction of nucleic acids with light is a scientific question of paramount relevance not only in the understanding of life functioning and evolution, but also in the insurgence of diseases such as malignant skin cancer and in the development of ... ...

    Abstract Interaction of nucleic acids with light is a scientific question of paramount relevance not only in the understanding of life functioning and evolution, but also in the insurgence of diseases such as malignant skin cancer and in the development of biomarkers and novel light-assisted therapeutic tools. This work shows that the UVA portion of sunlight, not absorbed by canonical DNA nucleobases, can be absorbed by 5-formyluracil (ForU) and 5-formylcytosine (ForC), two ubiquitous oxidatively generated lesions and epigenetic intermediates present in living beings in natural conditions. We measure the strong propensity of these molecules to populate triplet excited states able to transfer the excitation energy to thymine-thymine dyads, inducing the formation of cyclobutane pyrimidine dimers (CPDs). By using steady-state and transient absorption spectroscopy, NMR, HPLC, and theoretical calculations, we quantify the differences in the triplet-triplet energy transfer mediated by ForU and ForC, revealing that the former is much more efficient in delivering the excitation energy and producing the CPD photoproduct. Although significantly slower than ForU, ForC is also able to harm DNA nucleobases and therefore this process has to be taken into account as a viable photosensitization mechanism. The present findings evidence a rich photochemistry crucial to understand DNA damage photobehavior.
    MeSH term(s) Cytosine/analogs & derivatives ; Cytosine/chemistry ; Cytosine/radiation effects ; DNA Damage/radiation effects ; Dimerization ; Epigenesis, Genetic ; Oxidation-Reduction ; Photochemistry ; Sunlight ; Thymine/chemistry ; Thymine/radiation effects ; Ultraviolet Rays ; Uracil/analogs & derivatives ; Uracil/chemistry ; Uracil/radiation effects
    Chemical Substances 5-formylcytosine ; 5-formyluracil (1195-08-0) ; Uracil (56HH86ZVCT) ; Cytosine (8J337D1HZY) ; Thymine (QR26YLT7LT)
    Language English
    Publishing date 2020-10-24
    Publishing country England
    Document type Journal Article
    ZDB-ID 1476244-4
    ISSN 1463-9084 ; 1463-9076
    ISSN (online) 1463-9084
    ISSN 1463-9076
    DOI 10.1039/d0cp04557h
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