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  1. Article: Thrombosis and Inflammation-A Dynamic Interplay and the Role of Glycosaminoglycans and Activated Protein C.

    Kohli, Shrey / Shahzad, Khurrum / Jouppila, Annukka / Holthöfer, Harry / Isermann, Berend / Lassila, Riitta

    Frontiers in cardiovascular medicine

    2022  Volume 9, Page(s) 866751

    Abstract: Hemostasis, thrombosis, and inflammation are tightly interconnected processes which may give rise to thrombo-inflammation, involved in infectious and non-infectious acute and chronic diseases, including cardiovascular diseases (CVD). Traditionally, due ... ...

    Abstract Hemostasis, thrombosis, and inflammation are tightly interconnected processes which may give rise to thrombo-inflammation, involved in infectious and non-infectious acute and chronic diseases, including cardiovascular diseases (CVD). Traditionally, due to its hemostatic role, blood coagulation is isolated from the inflammation, and its critical contribution in the progressing CVD is underrated, until the full occlusion of a critical vessel occurs. Underlying vascular injury exposes extracellular matrix to deposit platelets and inflammatory cells. Platelets being key effector cells, bridge all the three key processes (hemostasis, thrombosis, and inflammation) associated with thrombo-inflammation. Under physiological conditions, platelets remain in an inert state despite the proximity to the endothelium and other cells which are decorated with glycosaminoglycan (GAG)-rich glycocalyx (GAGs). A pathological insult to the endothelium results in an imbalanced blood coagulation system hallmarked by increased thrombin generation due to losses of anticoagulant and cytoprotective mechanisms, i.e., the endothelial GAGs enhancing antithrombin, tissue factor pathway-inhibitor (TFPI) and thrombomodulin-protein C system. Moreover, the loss of GAGs promotes the release of mediators, such as von Willebrand factor (VWF), platelet factor 4 (PF4), and P-selectin, both locally on vascular surfaces and to circulation, further enhancing the adhesion of platelets to the affected sites. Platelet-neutrophil interaction and formation of neutrophil extracellular traps foster thrombo-inflammatory mechanisms exacerbating the cardiovascular disease course. Therefore, therapies which not only target the clotting mechanisms but simultaneously or independently convey potent cytoprotective effects hemming the inflammatory mechanisms are expected to provide clinical benefits. In this regard, we review the cytoprotective protease activated protein C (aPC) and its strong anti-inflammatory effects thereby preventing the ensuing thrombotic complications in CVD. Furthermore, restoring GAG-like vasculo-protection, such as providing heparin-proteoglycan mimetics to improve regulation of platelet and coagulation activity and to suppress of endothelial perturbance and leukocyte-derived pro-inflammatory cytokines, may provide a path to alleviate thrombo-inflammatory disorders in the future. The vascular tissue-modeled heparin proteoglycan mimic, antiplatelet and anticoagulant compound (APAC), dual antiplatelet and anticoagulant, is an injury-targeting and locally acting arterial antithrombotic which downplays collagen- and thrombin-induced and complement-induced activation and protects from organ injury.
    Language English
    Publishing date 2022-03-31
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2781496-8
    ISSN 2297-055X
    ISSN 2297-055X
    DOI 10.3389/fcvm.2022.866751
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Capturing the Kidney Transcriptome by Urinary Extracellular Vesicles-From Pre-Analytical Obstacles to Biomarker Research.

    Barreiro, Karina / Dwivedi, Om Prakash / Rannikko, Antti / Holthöfer, Harry / Tuomi, Tiinamaija / Groop, Per-Henrik / Puhka, Maija

    Genes

    2023  Volume 14, Issue 7

    Abstract: Urinary extracellular vesicles (uEV) hold non-invasive RNA biomarkers for genitourinary tract diseases. However, missing knowledge about reference genes and effects of preanalytical choices hinder biomarker studies. We aimed to assess how preanalytical ... ...

    Abstract Urinary extracellular vesicles (uEV) hold non-invasive RNA biomarkers for genitourinary tract diseases. However, missing knowledge about reference genes and effects of preanalytical choices hinder biomarker studies. We aimed to assess how preanalytical variables (urine storage temperature, isolation workflow) affect diabetic kidney disease (DKD)-linked miRNAs or kidney-linked miRNAs and mRNAs (kidney-RNAs) in uEV isolates and to discover stable reference mRNAs across diverse uEV datasets. We studied nine raw and normalized sequencing datasets including healthy controls and individuals with prostate cancer or type 1 diabetes with or without albuminuria. We focused on kidney-RNAs reviewing literature for DKD-linked miRNAs from kidney tissue, cell culture and uEV/urine experiments. RNAs were analyzed by expression heatmaps, hierarchical clustering and selecting stable mRNAs with normalized counts (>200) and minimal coefficient of variation. Kidney-RNAs were decreased after urine storage at -20 °C vs. -80 °C. Isolation workflows captured kidney-RNAs with different efficiencies. Ultracentrifugation captured DKD -linked miRNAs that separated healthy and diabetic macroalbuminuria groups. Eleven mRNAs were stably expressed across the datasets. Hence, pre-analytical choices had variable effects on kidney-RNAs-analyzing kidney-RNAs complemented global correlation, which could fade differences in some relevant RNAs. Replicating prior DKD-marker results and discovery of candidate reference mRNAs encourages further uEV biomarker studies.
    MeSH term(s) Male ; Humans ; Transcriptome ; Kidney/metabolism ; Extracellular Vesicles/genetics ; Extracellular Vesicles/metabolism ; MicroRNAs/genetics ; MicroRNAs/metabolism ; Biomarkers/metabolism ; RNA, Messenger/genetics
    Chemical Substances MicroRNAs ; Biomarkers ; RNA, Messenger
    Language English
    Publishing date 2023-07-08
    Publishing country Switzerland
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2527218-4
    ISSN 2073-4425 ; 2073-4425
    ISSN (online) 2073-4425
    ISSN 2073-4425
    DOI 10.3390/genes14071415
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Diabetes with kidney injury may change the abundance and cargo of urinary extracellular vesicles.

    Gu, Dongfeng / Ding, Yanan / Jiang, Xin / Shen, Beili / Musante, Luca / Holthofer, Harry / Zou, Hequn

    Frontiers in endocrinology

    2023  Volume 14, Page(s) 1085133

    Abstract: Background: Urinary extracellular vesicles (uEVs) are derived from epithelia facing the renal tubule lumen in the kidney and urogenital tract; they may carry protein biomarkers of renal dysfunction and structural injury. However, there are scarce ... ...

    Abstract Background: Urinary extracellular vesicles (uEVs) are derived from epithelia facing the renal tubule lumen in the kidney and urogenital tract; they may carry protein biomarkers of renal dysfunction and structural injury. However, there are scarce studies focusing on uEVs in diabetes with kidney injury.
    Materials and methods: A community-based epidemiological survey was performed, and the participants were randomly selected for our study. uEVs were enriched by dehydrated dialysis method, quantified by Coomassie Bradford protein assay, and adjusted by urinary creatinine (UCr). Then, they identified by transmission electron microscopy (TEM), nanoparticle track analysis (NTA), and western blot of tumor susceptibility gene 101.
    Results: Decent uEVs with a homogeneous distribution were finally obtained, presenting a membrane-encapsulated structure like cup-shaped or roundish under TEM, having active Brownian motion, and presenting the main peak between 55 and 110 nm under NTA. The Bradford protein assay showed that the protein concentrations of uEVs were 0.02 ± 0.02, 0.04 ± 0.05, 0.05 ± 0.04, 0.07 ± 0.08, and 0.11 ± 0.15 μg/mg UCr, respectively, in normal controls and in prediabetes, diabetes with normal proteinuria, diabetes with microalbuminuria, and diabetes with macroproteinuria groups after adjusting the protein concentration with UCr by calculating the vesicles-to-creatinine ratio.
    Conclusion: The protein concentration of uEVs in diabetes with kidney injury increased significantly than the normal controls before and after adjusting the UCr. Therefore, diabetes with kidney injury may change the abundance and cargo of uEVs, which may be involved in the physiological and pathological changes of diabetes.
    MeSH term(s) Humans ; Creatinine ; Kidney/metabolism ; Extracellular Vesicles/metabolism ; Kidney Tubules ; Prediabetic State/metabolism
    Chemical Substances Creatinine (AYI8EX34EU)
    Language English
    Publishing date 2023-04-03
    Publishing country Switzerland
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2592084-4
    ISSN 1664-2392
    ISSN 1664-2392
    DOI 10.3389/fendo.2023.1085133
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Urinary Extracellular Vesicles Magic Particles for Biomarker Discovery.

    Barreiro, Karina / Huber, Tobias B / Holthofer, Harry

    Advances in experimental medicine and biology

    2021  Volume 1306, Page(s) 29–40

    Abstract: Extracellular vesicles (EV) are small membrane-coated structures secreted by all cells of the body and can be detected in all bodily fluids, including urine. EV contents (e.g. proteins and distinct RNA classes) reflect the physiological state of their ... ...

    Abstract Extracellular vesicles (EV) are small membrane-coated structures secreted by all cells of the body and can be detected in all bodily fluids, including urine. EV contents (e.g. proteins and distinct RNA classes) reflect the physiological state of their cells of origin, offering a new source of biomarkers. Accordingly, urinary Extracellular Vesicles (uEVs) are emerging as a source for early biomarkers of kidney damage and beyond, holding the potential to replace the conventional invasive techniques including kidney biopsy. However, the lack of standardization and sample collection and isolation methods, and the influence of factors such as inter- and intra-individual variability create difficulties in interpreting current results. Here we review recent results and reported uses of especially urinary EVs and also pinpoint approaches to be considered when designing experiments.
    MeSH term(s) Biomarkers ; Body Fluids ; Extracellular Vesicles ; Humans ; Kidney Diseases
    Chemical Substances Biomarkers
    Language English
    Publishing date 2021-05-06
    Publishing country United States
    Document type Journal Article
    ISSN 2214-8019 ; 0065-2598
    ISSN (online) 2214-8019
    ISSN 0065-2598
    DOI 10.1007/978-3-030-63908-2_3
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: From genetics to personalized nephrology: kidney research at a tipping point.

    Huber, Tobias B / Holthofer, Harry

    Cell and tissue research

    2017  Volume 369, Issue 1, Page(s) 1–4

    Language English
    Publishing date 2017-07
    Publishing country Germany
    Document type Editorial
    ZDB-ID 125067-x
    ISSN 1432-0878 ; 0302-766X
    ISSN (online) 1432-0878
    ISSN 0302-766X
    DOI 10.1007/s00441-017-2637-5
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Capturing the Kidney Transcriptome by Urinary Extracellular Vesicles—From Pre-Analytical Obstacles to Biomarker Research

    Barreiro, Karina / Dwivedi, O. P. / Rannikko, Antti / Holthöfer, Harry / Tuomi, Tiinamaija / Groop, Per-Henrik / Puhka, Maija

    Genes (Basel). 2023 July 08, v. 14, no. 7

    2023  

    Abstract: Urinary extracellular vesicles (uEV) hold non-invasive RNA biomarkers for genitourinary tract diseases. However, missing knowledge about reference genes and effects of preanalytical choices hinder biomarker studies. We aimed to assess how preanalytical ... ...

    Abstract Urinary extracellular vesicles (uEV) hold non-invasive RNA biomarkers for genitourinary tract diseases. However, missing knowledge about reference genes and effects of preanalytical choices hinder biomarker studies. We aimed to assess how preanalytical variables (urine storage temperature, isolation workflow) affect diabetic kidney disease (DKD)—linked miRNAs or kidney—linked miRNAs and mRNAs (kidney-RNAs) in uEV isolates and to discover stable reference mRNAs across diverse uEV datasets. We studied nine raw and normalized sequencing datasets including healthy controls and individuals with prostate cancer or type 1 diabetes with or without albuminuria. We focused on kidney-RNAs reviewing literature for DKD-linked miRNAs from kidney tissue, cell culture and uEV/urine experiments. RNAs were analyzed by expression heatmaps, hierarchical clustering and selecting stable mRNAs with normalized counts (>200) and minimal coefficient of variation. Kidney-RNAs were decreased after urine storage at −20 °C vs. −80 °C. Isolation workflows captured kidney-RNAs with different efficiencies. Ultracentrifugation captured DKD -linked miRNAs that separated healthy and diabetic macroalbuminuria groups. Eleven mRNAs were stably expressed across the datasets. Hence, pre-analytical choices had variable effects on kidney-RNAs—analyzing kidney-RNAs complemented global correlation, which could fade differences in some relevant RNAs. Replicating prior DKD-marker results and discovery of candidate reference mRNAs encourages further uEV biomarker studies.
    Keywords albuminuria ; biomarkers ; cell culture ; data collection ; insulin-dependent diabetes mellitus ; kidney diseases ; kidneys ; microRNA ; prostatic neoplasms ; storage temperature ; transcriptome ; ultracentrifugation ; urine
    Language English
    Dates of publication 2023-0708
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article ; Online
    ZDB-ID 2527218-4
    ISSN 2073-4425
    ISSN 2073-4425
    DOI 10.3390/genes14071415
    Database NAL-Catalogue (AGRICOLA)

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  7. Article: Molecular architecture of the glomerular slit diaphragm: lessons learnt for a better understanding of disease pathogenesis.

    Holthöfer, Harry

    Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association

    2007  Volume 22, Issue 8, Page(s) 2124–2128

    MeSH term(s) Animals ; Cadherins/metabolism ; Cell Adhesion ; Humans ; Kidney/metabolism ; Kidney Diseases/diagnosis ; Kidney Diseases/pathology ; Kidney Diseases/physiopathology ; Kidney Glomerulus/metabolism ; Membrane Proteins/metabolism ; Mice ; Models, Biological ; Mutation ; Podocytes/metabolism ; Proteinuria/metabolism ; Signal Transduction
    Chemical Substances Cadherins ; Membrane Proteins ; nephrin
    Language English
    Publishing date 2007-08
    Publishing country England
    Document type Editorial ; Review
    ZDB-ID 90594-x
    ISSN 1460-2385 ; 0931-0509
    ISSN (online) 1460-2385
    ISSN 0931-0509
    DOI 10.1093/ndt/gfm344
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Urinary extracellular vesicles. A promising shortcut to novel biomarker discoveries.

    Barreiro, Karina / Holthofer, Harry

    Cell and tissue research

    2017  Volume 369, Issue 1, Page(s) 217–227

    Abstract: Proteomic and genomic techniques have reached full maturity and are providing unforeseen details for the comprehensive understanding of disease pathologies at a fraction of previous costs. However, for kidney diseases, many gaps in such information ... ...

    Abstract Proteomic and genomic techniques have reached full maturity and are providing unforeseen details for the comprehensive understanding of disease pathologies at a fraction of previous costs. However, for kidney diseases, many gaps in such information remain to inhibit major advances in the prevention, treatment and diagnostics of these devastating diseases, which have enormous global impact. The discovery of ubiquitous extracellular vesicles (EV) in all bodily fluids is rapidly increasing the fundamental knowledge of disease mechanisms and the ways in which cells communicate with distant locations in processes of cancer spread, immunological regulation, barrier functions and general modulation of cellular activity. In this review, we describe some of the most prominent research streams and findings utilizing urinary extracellular vesicles as highly versatile and dynamic tools with their extraordinary protein and small regulatory RNA species. While being a highly promising approach, the relatively young field of EV research suffers from a lack of adherence to strict standardization and carefully scrutinized methods for obtaining fully reproducible results. With the appropriate guidelines and standardization achieved, urine is foreseen as forming a unique, robust and easy route for determining accurate and personalized disease signatures and as providing highly useful early biomarkers of the disease pathology of the kidney and beyond.
    MeSH term(s) Animals ; Biomarkers/metabolism ; Cell-Derived Microparticles/metabolism ; Humans ; Kidney/metabolism ; Proteomics/methods
    Chemical Substances Biomarkers
    Language English
    Publishing date 2017-04-20
    Publishing country Germany
    Document type Journal Article ; Review
    ZDB-ID 125067-x
    ISSN 1432-0878 ; 0302-766X
    ISSN (online) 1432-0878
    ISSN 0302-766X
    DOI 10.1007/s00441-017-2621-0
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Isolating Urinary Extracellular Vesicles as Biomarkers for Diabetic Disease.

    Barreiro, Karina / Huber, Tobias B / Holthofer, Harry

    Methods in molecular biology (Clifton, N.J.)

    2019  Volume 2067, Page(s) 175–188

    Abstract: Extracellular vesicles are lipid bilayer enclosed structures secreted by all cell types. Their cargo includes proteins, lipids, RNAs, and DNA, which reflect the physiological state of their cells of origin. Recently, urinary extracellular vesicles have ... ...

    Abstract Extracellular vesicles are lipid bilayer enclosed structures secreted by all cell types. Their cargo includes proteins, lipids, RNAs, and DNA, which reflect the physiological state of their cells of origin. Recently, urinary extracellular vesicles have emerged as a valuable source of biomarkers for kidney and systemic disease.Unfortunately, all existing methods for extracellular vesicle isolation from urine are time consuming and/or expensive. Thus, they are not adaptable to large-scale studies and unsuitable for clinical use without special equipment in the laboratory. Recently, our group has devised a set of new, quick, simple, and inexpensive techniques, based on hydrostatic filtration dialysis (HFD) of urine extremely suitable for diagnostic purposes. This novel approach represents a great potential for new diagnostics and understanding disease biology in general and brings the biomarker detection to the scope of all laboratories.
    MeSH term(s) Diabetic Nephropathies/diagnosis ; Diabetic Nephropathies/pathology ; Diabetic Nephropathies/urine ; Dialysis/instrumentation ; Dialysis/methods ; Extracellular Vesicles/pathology ; Feasibility Studies ; Humans ; Kidney/pathology ; Kidney Function Tests/instrumentation ; Kidney Function Tests/methods ; Urinalysis/instrumentation ; Urinalysis/methods
    Language English
    Publishing date 2019-12-02
    Publishing country United States
    Document type Journal Article ; Review
    ISSN 1940-6029
    ISSN (online) 1940-6029
    DOI 10.1007/978-1-4939-9841-8_13
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Genome-wide mRNA profiling in urinary extracellular vesicles reveals stress gene signature for diabetic kidney disease.

    Dwivedi, Om Prakash / Barreiro, Karina / Käräjämäki, Annemari / Valo, Erkka / Giri, Anil K / Prasad, Rashmi B / Roy, Rishi Das / Thorn, Lena M / Rannikko, Antti / Holthöfer, Harry / Gooding, Kim M / Sourbron, Steven / Delic, Denis / Gomez, Maria F / Groop, Per-Henrik / Tuomi, Tiinamaija / Forsblom, Carol / Groop, Leif / Puhka, Maija

    iScience

    2023  Volume 26, Issue 5, Page(s) 106686

    Abstract: Urinary extracellular vesicles (uEV) are a largely unexplored source of kidney-derived mRNAs with potential to serve as a liquid kidney biopsy. We assessed ∼200 uEV mRNA samples from clinical studies by genome-wide sequencing to discover mechanisms and ... ...

    Abstract Urinary extracellular vesicles (uEV) are a largely unexplored source of kidney-derived mRNAs with potential to serve as a liquid kidney biopsy. We assessed ∼200 uEV mRNA samples from clinical studies by genome-wide sequencing to discover mechanisms and candidate biomarkers of diabetic kidney disease (DKD) in Type 1 diabetes (T1D) with replication in Type 1 and 2 diabetes. Sequencing reproducibly showed >10,000 mRNAs with similarity to kidney transcriptome. T1D DKD groups showed 13 upregulated genes prevalently expressed in proximal tubules, correlated with hyperglycemia and involved in cellular/oxidative stress homeostasis. We used six of them (
    Language English
    Publishing date 2023-04-18
    Publishing country United States
    Document type Journal Article
    ISSN 2589-0042
    ISSN (online) 2589-0042
    DOI 10.1016/j.isci.2023.106686
    Database MEDical Literature Analysis and Retrieval System OnLINE

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