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  1. Article ; Online: Bastos, J.C.S.; Kohn, L.K.; Fantinatti-Garboggini, F.; Padilla, M.A.; Flores, E.F.; da Silva, B.P.; de Menezes, C.B.A.; Arns, C.W. Antiviral Activity of Bacillus sp. Isolated from the Marine Sponge Petromica citrina against Bovine Viral Diarrhea Virus, a Surrogate Model of the Hepatitis C Virus. Viruses 2013, 5, 1219-1230.

    Juliana Cristina Santiago Bastos / Luciana Konecny Kohn / Fabiana Fantinatti-Garboggini / Marina Aiello Padilla / Eduardo Furtado Flores / Bárbara Pereira da Silva / Cláudia Beatriz Afonso de Menezes / Clarice Weis Arns

    Viruses, Vol 5, Iss 7, Pp 1682-

    2013  Volume 1683

    Abstract: The authors wish to add the following Acknowledgments and completed Table 1 to their paper published in Viruses [1], doi:10.3390/v5051219, website: http://www.mdpi.com/1999-4915/5/5/1219. ...

    Abstract The authors wish to add the following Acknowledgments and completed Table 1 to their paper published in Viruses [1], doi:10.3390/v5051219, website: http://www.mdpi.com/1999-4915/5/5/1219.
    Keywords n/a ; Microbiology ; QR1-502 ; Science ; Q ; DOAJ:Microbiology ; DOAJ:Biology ; DOAJ:Biology and Life Sciences
    Language English
    Publishing date 2013-07-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  2. Article ; Online: Unravelling the molecular interactions behind the formation of PEG/PPG aqueous two-phase systems.

    Jorge, Alexandre M S / Silva, Gonçalo M C / Coutinho, João A P / Pereira, Jorge F B

    Physical chemistry chemical physics : PCCP

    2024  Volume 26, Issue 9, Page(s) 7308–7317

    Abstract: The understanding of molecular interactions that control phase separation in polymer/polymer aqueous two-phase systems (ATPS) has been a subject of debate up to this day. In light of this, we set out to investigate the molecular interactions occurring in ...

    Abstract The understanding of molecular interactions that control phase separation in polymer/polymer aqueous two-phase systems (ATPS) has been a subject of debate up to this day. In light of this, we set out to investigate the molecular interactions occurring in ternary mixtures composed of polyethylene glycol (PEG600), polypropylene glycol (PPG400) and water. The ternary phase diagram was plotted at two temperatures (298 K and 323 K), revealing a transition from a type 0 to a type I diagram. Molecular dynamics (MD) simulations were performed to elucidate the polymer-polymer and polymer-water interactions occurring at different temperatures and water concentrations. COnductor-like Screening Model for Realistic Solvents (COSMO-RS) was used to assess the thermodynamic properties of the polymer-water binary mixtures and their correlation with ATPS formation. The MD simulations clearly demonstrate the effect of segregation/separation with increasing water content and temperature, highlighting a significant reduction in PPG-water interactions compared to PEG-water counterparts. Polymer-water interactions were identified as those controlling the phase separation mechanism, and the thermodynamic properties determined with COSMO-RS for the polymer-water binary systems further support this view.
    Language English
    Publishing date 2024-02-28
    Publishing country England
    Document type Journal Article
    ZDB-ID 1476244-4
    ISSN 1463-9084 ; 1463-9076
    ISSN (online) 1463-9084
    ISSN 1463-9076
    DOI 10.1039/d3cp05539f
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Microorganisms causing vulvovaginitis: analysis of 1,688 cervicovaginal cytology.

    Pereira, E B C / Carvalho, C N / Carvalho Neto, A P M / de Omena, A C S / Magalhães, P K A / Cavalcanti, M G S / Ferreira Júnior, G C / Costa, J G / de Omena, B C / Silva, A C / Santos, J M S / Rocha, T J M

    Brazilian journal of biology = Revista brasleira de biologia

    2024  Volume 83, Page(s) e275237

    MeSH term(s) Female ; Humans ; Vulvovaginitis/diagnosis ; Vulvovaginitis/microbiology
    Language English
    Publishing date 2024-02-26
    Publishing country Brazil
    Document type Journal Article
    ZDB-ID 2036257-2
    ISSN 1678-4375 ; 1519-6984
    ISSN (online) 1678-4375
    ISSN 1519-6984
    DOI 10.1590/1519-6984.275237
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Computed tomography changes diagnosis, management and surgical planning of ankle fractures.

    Mansur, N S B / Neves, C M S C C / Celestino, F S / Gonçalves, J P P / Pereira, V F / Silva, P D V / Matsunaga, F T / Nery, C A S / Astur, D C

    Musculoskeletal surgery

    2024  

    Abstract: ... segment) (ps < 0.042), syndesmosis injury (p < 0.001), and the absence of deltoid ligament lesion (p < 0 ... indication (p = 0.007), prone positioning (p = 0.002), posterior malleolus surgical treatment (p < 0.001 ... posterolateral approach for the lateral malleolus (p = 0.003), and syndesmosis fixation (p = 0.020 ...

    Abstract Purpose: To demonstrate how the use of adjunctive Computed Tomography (CT) can modify diagnosis, treatment options, and operative planning of ankle fractures in comparison with conventional radiographs (CR) in isolation.
    Materials and methods: A total of 53 patients diagnosed with an ankle fracture between 2011 and 2016, were assessed with CT and CR. Evaluations of the fractures using CR in isolation and CR combined with CT were compared using different readers. Fractures were assessed in terms of type, displacement, size, associated injuries, treatment, patient position and surgical planning.
    Results: The medial malleolus fractures characteristics (posteromedial fragment and anterior colliculus), the presence of posterior malleolus fracture and its characteristics (displacement, size, posteromedial or posterolateral segment) (ps < 0.042), syndesmosis injury (p < 0.001), and the absence of deltoid ligament lesion (p < 0.001), were more evident with the combination of CT and radiographs. There was an increase in operative indication (p = 0.007), prone positioning (p = 0.002), posterior malleolus surgical treatment (p < 0.001), posterolateral approach for the lateral malleolus (p = 0.003), and syndesmosis fixation (p = 0.020) with the association of CT and CR, among all groups of expertise, with a high interobserver reliability (> 0.75).
    Conclusions: The CR may fail to demonstrate subtle lesions, such as posterior malleolus fractures and syndesmotic injuries. The CT evaluation increases the diagnostic precision and improves the quality of information the surgeon receives, what might positively affect patient care.
    Level of evidence iii: Retrospective Comparative Study.
    Language English
    Publishing date 2024-03-11
    Publishing country Italy
    Document type Journal Article
    ZDB-ID 2495458-5
    ISSN 2035-5114 ; 2035-5106
    ISSN (online) 2035-5114
    ISSN 2035-5106
    DOI 10.1007/s12306-024-00814-4
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Prior MRI-imaging impact of patients submitted to brachytherapy for prostate cancer.

    Vieira E Brito, D / Fereira, A / Pereira, J / Pereira-Lourenço, M / Godinho, R / Pereira, B / Peralta, P / Conceiçao, P / Reis Mario, A / Paula Rabaça, C

    Actas urologicas espanolas

    2023  Volume 47, Issue 8, Page(s) 503–508

    Abstract: ... to mpMRI (P = .244). The median value of nadir was 0.42 ng/mL (<0.001-2) in patients submitted to mpMRI and ... vs 0.28 ng/mL (<0.001-4) in patients without MRI (P = .062) Recurrence utilizing Phoenix criteria was ... 9% (n = 2) in patients with MRI and 9.2% (n = 5) without mpMRI (P = .456), median follow-up of 43 ...

    Abstract Introduction: Brachytherapy for the treatment of prostate cancer is a well-established option. Use of Multiparametric Magnetic Resonance Imaging (mpMRI) for staging and diagnosis of prostate cancer has come to change the current paradigm. In this study we aim to assess the impact of performing mpMRI to evaluate the presence of extracapsular lesions before brachytherapy in patients with prostate cancer concerning biochemical recurrence and time to nadir.
    Methods: Review data from 73 patients submitted to brachytherapy. The following factors were evaluated: age, initial PSA, MRI local staging results, ISUP, nadir, time to nadir, PSA at one-year, biochemical recurrence, and time to recurrence.
    Results: Median age was 68 years (51-72) and median follow-up 53 months (30-72). Concerning imaging modality 30,1% (n = 22) patients performed mpMRI. In the mpMRI group, 90.9% (n = 20) had at least one suspect lesion on mpMRI. Time to nadir was 27 months (3-64) in patients where mpMRI was not performed and 23.5 months (2-48) in patients submitted to mpMRI (P = .244). The median value of nadir was 0.42 ng/mL (<0.001-2) in patients submitted to mpMRI and vs 0.28 ng/mL (<0.001-4) in patients without MRI (P = .062) Recurrence utilizing Phoenix criteria was 9% (n = 2) in patients with MRI and 9.2% (n = 5) without mpMRI (P = .456), median follow-up of 43 months (12-72) for the MRI group with 58 months (30-78) for the non-mpMRI group. Both groups were statistically similar.
    Conclusion: Our results allow us to conclude that in our series MRI did not influence biochemical recurrence, time to nadir, or nadir value.
    MeSH term(s) Male ; Humans ; Aged ; Prostate-Specific Antigen ; Brachytherapy ; Prostatic Neoplasms/diagnostic imaging ; Prostatic Neoplasms/radiotherapy ; Prostatic Neoplasms/pathology ; Magnetic Resonance Imaging/methods ; Multiparametric Magnetic Resonance Imaging
    Chemical Substances Prostate-Specific Antigen (EC 3.4.21.77)
    Language Spanish
    Publishing date 2023-04-20
    Publishing country Spain
    Document type Journal Article
    ISSN 2173-5786
    ISSN (online) 2173-5786
    DOI 10.1016/j.acuroe.2023.04.009
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Effect of weaning age and pace on blood metabolites, cortisol concentration, and the mRNA abundance of inflammation-related genes in gastrointestinal, adipose, and liver tissue of Holstein dairy calves.

    Agustinho, B C / Wolfe, A / Tsai, C Y / Pereira, L M / Konetchy, D E / Laarman, A H / Rezamand, P

    Journal of dairy science

    2024  

    Abstract: ... noted at P ≤ 0.05 and tendencies when 0.05 <P ≤ 0.10. EA calves showed a tendency to have the greatest ...

    Abstract The objective of this study was to evaluate the effects of weaning age and pace on blood metabolites, cortisol concentration, and mRNA abundance of inflammation-related genes in Holstein dairy calves. Seventy-one day-old calves [38.8 ± 4.4 kg, body weight (BW) ± sd] blocked by gender and birth BW, were randomly assigned to a 2 × 2 factorial arrangement of treatments. The first factor was weaning age [6 weeks (early) vs. Eight weeks (late)], the second factor was weaning pace [abrupt (4 step-down over 3 d, the initial milk replacer was 7.6 L, which was reduced 1.9 L in each step-down) vs. gradual (7 step-down over 14 d, the initial milk replacer was 7.6 L, which was reduced 1.09 L in each step-down)], generating early-abrupt (EA), early-gradual (EG), late-abrupt (LA), and late-gradual (LG) treatments. All treatments had 10 female and 8 male calves, except EA that had 1 fewer male calf. Milk replacer (MR; 24% CP, 17% fat) was bottle-fed, up to 1,200 g/d, twice daily (0600h and 1800h). EA and EG calves received 46.2 kg MR while LA and LG calves received a total of 63 kg MR. The study had 2 cohorts (2020, n = 40; 2021, n = 31), and each cohort included all treatments. Blood was collected from the jugular vein at 0900h on d 3 and d 7 of age, a day before starting and a day after weaning completion; male calves were humanely killed a day post-weaning. Rumen, jejunum, large intestine, liver, omental adipose and perirenal adipose tissues were sampled to determine the mRNA abundance of inflammation-related genes. Weaning pace, age, and pace × age, birth BW, and sex were included as fixed and cohort was included as random effects in the model. Blood metabolites and cortisol were analyzed as repeated measure, and sampling day, pace × sampling day, and age × sampling day were also included as additional fixed effects. Significance were noted at P ≤ 0.05 and tendencies when 0.05 <P ≤ 0.10. EA calves showed a tendency to have the greatest nonesterified fatty acid (NEFA) concentration compared with all other treatments. There was a pace × day effect on serum NEFA and β-hydroxybutyrate (BHBA); calves weaned in abrupt pace had an increased NEFA post-weaning compared with that for gradual weaning. Calves weaned in the gradual pace showed the greatest serum BHBA post-weaning. Most mRNA abundance of inflammation-related genes affected by treatments showed a similar pattern; downregulated by the abrupt (liver IL-1β) and early weaning (jejunum TNF-α and ICAM), and in some cases the interaction intensified the effect, demonstrating a weakened immune response in calves experiencing more stressful conditions (EA: IL-6 in the liver and NF-κB in the perirenal adipose tissue). Overall, the downregulation of mRNA abundance of inflammation-related genes in EA calves may be attributed to the suppression of the immune system and an immature immune response. Furthermore, the greater NEFA in EA calves could be attributed to a reduced starter intake, less developed rumen, or shorter time during the weaning transition.
    Language English
    Publishing date 2024-01-10
    Publishing country United States
    Document type Journal Article
    ZDB-ID 242499-x
    ISSN 1525-3198 ; 0022-0302
    ISSN (online) 1525-3198
    ISSN 0022-0302
    DOI 10.3168/jds.2023-23642
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: A proof of principle study using radiopharmaceuticals to quantify and localize container-content interactions in medical syringes.

    Dupire, C / Chennell, P / Pereira, B / Courtiol, N / Buj, S / Cueff, R / Crauste-Manciet, S / Sautou, V / Morgat, C

    Scientific reports

    2023  Volume 13, Issue 1, Page(s) 2721

    Abstract: The sorption of drugs onto their contents is a known phenomenon that is difficult to analyse precisely. The purpose of this study was to present a non-invasive method for locating and quantifying sorption phenomena using radiopharmaceuticals. ... ...

    Abstract The sorption of drugs onto their contents is a known phenomenon that is difficult to analyse precisely. The purpose of this study was to present a non-invasive method for locating and quantifying sorption phenomena using radiopharmaceuticals. Radiopharmaceutical are medicines armed with a radionuclide enabling quantification and imaging using dedicated scanners. The sorption of nine different radiopharmaceuticals on 2- and 3-part syringes was investigated. These syringes were filled with the studied radiopharmaceutical solutions and stored immobile for 3 h. At different times ranging from 0 to 180 min, 10 µL were taken from the syringes and the radioactivity of these samples was determined by a gamma counter. 5 radiopharmaceuticals exhibited no significant sorption at any time point in both 2 and 3-parts syringes, but 4 radiopharmaceuticals exhibited sorption losses varying from 20 to 33% after 3 h contact with 3-part-syringes, but no sorption on 2-part syringes at any time point. [
    MeSH term(s) Radiopharmaceuticals/analysis ; Syringes ; Rubber
    Chemical Substances Radiopharmaceuticals ; Rubber (9006-04-6)
    Language English
    Publishing date 2023-02-15
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-023-29923-z
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article: Systemic Therapy for Advanced Hepatocellular Carcinoma: Current Stand and Perspectives.

    Girardi, Daniel M / Sousa, Lara P / Miranda, Thiago A / Haum, Fernanda N C / Pereira, Gabriel C B / Pereira, Allan A L

    Cancers

    2023  Volume 15, Issue 6

    Abstract: Hepatocellular carcinoma often develops in the context of chronic liver disease. It is the sixth most frequently diagnosed cancer and the third most common cause of cancer-related mortality worldwide. Although the mainstay of therapy is surgical ... ...

    Abstract Hepatocellular carcinoma often develops in the context of chronic liver disease. It is the sixth most frequently diagnosed cancer and the third most common cause of cancer-related mortality worldwide. Although the mainstay of therapy is surgical resection, most patients are not eligible because of liver dysfunction or tumor extent. Sorafenib was the first tyrosine kinase inhibitor that improved the overall survival of patients who failed to respond to local therapies or had advanced disease, and for many years, it was the only treatment approved for the first-line setting. However, in recent years, trials have demonstrated an improvement in survival with treatments based on immunotherapy and new targeting agents, thereby extending the treatment options. A phase III trial showed that a combination of immunotherapy and targeted therapy, including atezolizumab plus bevacizumab, improved survival in the first-line setting, and is now considered the new standard of care. Other agents and combinations are being tested, including the combination of nivolumab plus ipilimumab and tremelimumab plus durvalumab, and they reportedly have clinical benefits. The aim of this manuscript is to review the latest approved therapeutic options in first- and second-line settings for advanced HCC and discuss future perspectives.
    Language English
    Publishing date 2023-03-09
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2527080-1
    ISSN 2072-6694
    ISSN 2072-6694
    DOI 10.3390/cancers15061680
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article: Critical Factors in Sample Collection and Preparation for Clinical Metabolomics of Underexplored Biological Specimens.

    de Souza, Hygor M R / Pereira, Tássia T P / de Sá, Hanna C / Alves, Marina A / Garrett, Rafael / Canuto, Gisele A B

    Metabolites

    2024  Volume 14, Issue 1

    Abstract: This review article compiles critical pre-analytical factors for sample collection and extraction of eight uncommon or underexplored biological specimens (human breast milk, ocular fluids, sebum, seminal plasma, sweat, hair, saliva, and cerebrospinal ... ...

    Abstract This review article compiles critical pre-analytical factors for sample collection and extraction of eight uncommon or underexplored biological specimens (human breast milk, ocular fluids, sebum, seminal plasma, sweat, hair, saliva, and cerebrospinal fluid) under the perspective of clinical metabolomics. These samples are interesting for metabolomics studies as they reflect the status of living organisms and can be applied for diagnostic purposes and biomarker discovery. Pre-collection and collection procedures are critical, requiring protocols to be standardized to avoid contamination and bias. Such procedures must consider cleaning the collection area, sample stimulation, diet, and food and drug intake, among other factors that impact the lack of homogeneity of the sample group. Precipitation of proteins and removal of salts and cell debris are the most used sample preparation procedures. This review intends to provide a global view of the practical aspects that most impact results, serving as a starting point for the designing of metabolomic experiments.
    Language English
    Publishing date 2024-01-05
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2662251-8
    ISSN 2218-1989
    ISSN 2218-1989
    DOI 10.3390/metabo14010036
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article: A method to produce a flexible and customized fuel models dataset.

    Sá, A C L / Benali, A / Aparicio, B A / Bruni, C / Mota, C / Pereira, J M C / Fernandes, P M

    MethodsX

    2023  Volume 10, Page(s) 102218

    Abstract: Simulation of vegetation fires very often resorts to fire-behavior models that need fuel models as input. The lack of fuel models is a common problem for researchers and fire managers because its quality depends on the quality/availability of data. In ... ...

    Abstract Simulation of vegetation fires very often resorts to fire-behavior models that need fuel models as input. The lack of fuel models is a common problem for researchers and fire managers because its quality depends on the quality/availability of data. In this study we present a method that combines expert- and research-based knowledge with several sources of data (e.g. satellite and fieldwork) to produce customized fuel models maps. Fuel model classes are assigned to land cover types to produce a basemap, which is then updated using empirical and user-defined rules. This method produces a map of surface fuel models as detailed as possible. It is reproducible, and its flexibility relies on juxtaposing independent spatial datasets, depending on their quality or availability. This method is developed in a ModelBuilder/ArcGis toolbox named FUMOD that integrates ten sub-models. FUMOD has been used to map the Portuguese annual fuel models grids since 2019, supporting regional fire risk assessments and suppression decisions. Datasets, models and supplementary files are available in a repository (https://github.com/anasa30/PT_FuelModels). •FUMOD is a flexible toolbox with ten sub-models included that maps updated Portuguese fuel models.
    Language English
    Publishing date 2023-05-19
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 2830212-6
    ISSN 2215-0161
    ISSN 2215-0161
    DOI 10.1016/j.mex.2023.102218
    Database MEDical Literature Analysis and Retrieval System OnLINE

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