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Article ; Online: Investigating Adult Stem Cells Through Lineage analyses.

Kalderon, Daniel

2021 Volume 18, Issue 1, Page(s) 2–22

Abstract: A simple, universal and fundamental definition of adult stem cell communities is proposed. Key principles of cell lineage methods for defining adult stem cell numbers, locations and behaviors are critically evaluated, emphasizing the imperatives of ... ...

Abstract	A simple, universal and fundamental definition of adult stem cell communities is proposed. Key principles of cell lineage methods for defining adult stem cell numbers, locations and behaviors are critically evaluated, emphasizing the imperatives of capturing the full spectrum of individual stem cell behaviors, examining a variety of experimental time periods and avoiding unwarranted assumptions. The focus is first on defining fundamentals and then addresses stem cell heterogeneity, potential hierarchies and how individual cells serve the function of a stem cell community.
MeSH term(s)	Adult Stem Cells ; Cell Lineage/genetics ; Stem Cells
Language	English
Publishing date	2021-10-22
Publishing country	United States
Document type	Journal Article ; Research Support, N.I.H., Extramural ; Review
ZDB-ID	2495577-2
ISSN	2629-3277 ; 1558-6804 ; 1550-8943
ISSN (online)	2629-3277 ; 1558-6804
ISSN	1550-8943
DOI	10.1007/s12015-021-10282-z
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article ; Online: Determination of the Ratio of b-Quark Fragmentation Fractions f(s)/f(d) in pp Collisions at √s=7 TeV with the ATLAS Detector.

Aad, G / Abbott, B / Abdallah, J / Abdinov, O / Aben, R / Abolins, M / AbouZeid, O S / Abramowicz, H / Abreu, H / Abreu, R / Abulaiti, Y / Acharya, B S / Adamczyk, L / Adams, D L / Adelman, J / Adomeit, S / Adye, T / Affolder, A A / Agatonovic-Jovin, T /

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Armadans, R / Campana, S / Campanelli, M / Campoverde, A / Canale, V / Canepa, A / Cano Bret, M / Cantero, J / Cantrill, R / Cao, T / Capeans Garrido, M D M / Caprini, I / Caprini, M / Capua, M / Caputo, R / Cardarelli, R / Cardillo, F / Carli, T / Carlino, G / Carminati, L / Caron, S / Carquin, E / Carrillo-Montoya, G D / Carter, J R / Carvalho, J / Casadei, D / Casado, M P / Casolino, M / Castaneda-Miranda, E / Castelli, A / Castillo Gimenez, V / Castro, N F / Catastini, P / Catinaccio, A / Catmore, J R / Cattai, A / Caudron, J / Cavaliere, V / Cavalli, D / Cavalli-Sforza, M / Cavasinni, V / Ceradini, F / Cerio, B C / Cerny, K / Cerqueira, A S / Cerri, A / Cerrito, L / Cerutti, F / Cerv, M / Cervelli, A / Cetin, S A / Chafaq, A / Chakraborty, D / Chalupkova, I / Chang, P / Chapman, J D / Charlton, D G / Chau, C C / Chavez Barajas, C A / Cheatham, S / Chegwidden, A / Chekanov, S / Chekulaev, S V / Chelkov, G A / Chelstowska, M A / Chen, C / Chen, H / Chen, K / Chen, L / Chen, S / 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Cortes-Gonzalez, A / Cortiana, G / Costa, G / Costa, M J / Costanzo, D / Côté, D / Cottin, G / Cowan, G / Cox, B E / Cranmer, K / Cree, G / Crépé-Renaudin, S / Crescioli, F / Cribbs, W A / Crispin Ortuzar, M / Cristinziani, M / Croft, V / Crosetti, G / Cuhadar Donszelmann, T / Cummings, J / Curatolo, M / Cuthbert, C / Czirr, H / Czodrowski, P / D'Auria, S / D'Onofrio, M / Da Cunha Sargedas De Sousa, M J / Da Via, C / Dabrowski, W / Dafinca, A / Dai, T / Dale, O / Dallaire, F / Dallapiccola, C / Dam, M / Dandoy, J R / Dang, N P / Daniells, A C / Danninger, M / Dano Hoffmann, M / Dao, V / Darbo, G / Darmora, S / Dassoulas, J / Dattagupta, A / Davey, W / David, C / Davidek, T / Davies, E / Davies, M / Davison, P / Davygora, Y / Dawe, E / Dawson, I / Daya-Ishmukhametova, R K / De, K / de Asmundis, R / De Benedetti, A / De Castro, S / De Cecco, S / De Groot, N / de Jong, P / De la Torre, H / De Lorenzi, F / De Pedis, D / De Salvo, A / De Sanctis, U / De Santo, A / De Vivie De Regie, J B / 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/ Heim, S / Heim, T / Heinemann, B / Heinrich, L / Hejbal, J / Helary, L / Hellman, S / Hellmich, D / Helsens, C / Henderson, J / Henderson, R C W / Heng, Y / Hengler, C / Henrichs, A / Henriques Correia, A M / Henrot-Versille, S / Herbert, G H / Hernández Jiménez, Y / Herrberg-Schubert, R / Herten, G / Hertenberger, R / Hervas, L / Hesketh, G G / Hessey, N P / Hetherly, J W / Hickling, R / Higón-Rodriguez, E / Hill, E / Hill, J C / Hiller, K H / Hillier, S J / Hinchliffe, I / Hines, E / Hinman, R R / Hirose, M / Hirschbuehl, D / Hobbs, J / Hod, N / Hodgkinson, M C / Hodgson, P / Hoecker, A / Hoeferkamp, M R / Hoenig, F / Hohlfeld, M / Hohn, D / Holmes, T R / Homann, M / Hong, T M / Hooft van Huysduynen, L / Hopkins, W H / Horii, Y / Horton, A J / Hostachy, J-Y / Hou, S / Hoummada, A / Howard, J / Howarth, J / Hrabovsky, M / Hristova, I / Hrivnac, J / Hryn'ova, T / Hrynevich, A / Hsu, C / Hsu, P J / Hsu, S-C / Hu, D / Hu, Q / Hu, X / Huang, Y / Hubacek, Z / Hubaut, F / Huegging, F / 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/ Shamim, M / Shan, L Y / Shang, R / Shank, J T / Shapiro, M / Shatalov, P B / Shaw, K / Shaw, S M / Shcherbakova, A / Shehu, C Y / Sherwood, P / Shi, L / Shimizu, S / Shimmin, C O / Shimojima, M / Shiyakova, M / Shmeleva, A / Shoaleh Saadi, D / Shochet, M J / Shojaii, S / Shrestha, S / Shulga, E / Shupe, M A / Shushkevich, S / Sicho, P / Sidebo, P E / Sidiropoulou, O / Sidorov, D / Sidoti, A / Siegert, F / Sijacki, Dj / Silva, J / Silver, Y / Silverstein, S B / Simak, V / Simard, O / Simic, Lj / Simion, S / Simioni, E / Simmons, B / Simon, D / Sinervo, P / Sinev, N B / Sioli, M / Siragusa, G / Sisakyan, A N / Sivoklokov, S Yu / Sjölin, J / Sjursen, T B / Skinner, M B / Skottowe, H P / Skubic, P / Slater, M / Slavicek, T / Slawinska, M / Sliwa, K / Smakhtin, V / Smart, B H / Smestad, L / Smirnov, S Yu / Smirnov, Y / Smirnova, L N / Smirnova, O / Smith, M N K / Smith, R W / Smizanska, M / Smolek, K / Snesarev, A A / Snidero, G / Snyder, S / Sobie, R / Socher, F / Soffer, A / Soh, D A / Sokhrannyi, G / Solans, C A / Solar, M / Solc, J / Soldatov, E Yu / Soldevila, U / Solodkov, A A / Soloshenko, A / Solovyanov, O V / Solovyev, V / Sommer, P / Song, H Y / Soni, N / Sood, A / Sopczak, A / Sopko, B / Sopko, V / Sorin, V / Sosa, D / Sosebee, M / Sotiropoulou, C L / Soualah, R / Soukharev, A M / South, D / Sowden, B C / Spagnolo, S / Spalla, M / Spangenberg, M / Spanò, F / Spearman, W R / Sperlich, D / Spettel, F / Spighi, R / Spigo, G / Spiller, L A / Spousta, M / Spreitzer, T / St Denis, R D / Staerz, S / Stahlman, J / Stamen, R / Stamm, S / Stanecka, E / Stanescu, C / Stanescu-Bellu, M / Stanitzki, M M / Stapnes, S / Starchenko, E A / Stark, J / Staroba, P / Starovoitov, P / Staszewski, R / Stavina, P / Steinberg, P / Stelzer, B / Stelzer, H J / Stelzer-Chilton, O / Stenzel, H / Stewart, G A / Stillings, J A / Stockton, M C / Stoebe, M / Stoicea, G / Stolte, P / Stonjek, S / Stradling, A R / Straessner, A / Stramaglia, M E / Strandberg, J / Strandberg, S / Strandlie, A / Strauss, E / Strauss, M / Strizenec, P / Ströhmer, R / Strom, D M / Stroynowski, R / Strubig, A / Stucci, S A / Stugu, B / Styles, N A / Su, D / Su, J / Subramaniam, R / Succurro, A / Sugaya, Y / Suhr, C / Suk, M / Sulin, V V / Sultansoy, S / Sumida, T / Sun, S / Sun, X / Sundermann, J E / Suruliz, K / Susinno, G / Sutton, M R / Suzuki, S / Svatos, M / Swiatlowski, M / Sykora, I / Sykora, T / Ta, D / Taccini, C / Tackmann, K / Taenzer, J / Taffard, A / Tafirout, R / Taiblum, N / Takai, H / Takashima, R / Takeda, H / Takeshita, T / Takubo, Y / Talby, M / Talyshev, A A / Tam, J Y C / Tan, K G / Tanaka, J / Tanaka, R / Tanaka, S / Tannenwald, B B / Tannoury, N / Tapprogge, S / Tarem, S / Tarrade, F / Tartarelli, G F / Tas, P / Tasevsky, M / Tashiro, T / Tassi, E / Tavares Delgado, A / Tayalati, Y / Taylor, F E / Taylor, G N / Taylor, W / Teischinger, F A / Teixeira Dias Castanheira, M / Teixeira-Dias, P / Temming, K K / Temple, D / Ten Kate, H / Teng, P K / Teoh, J J / Tepel, F / Terada, S / Terashi, K / Terron, J / Terzo, S / Testa, M / Teuscher, R J / Theveneaux-Pelzer, T / Thomas, J P / Thomas-Wilsker, J / Thompson, E N / Thompson, P D / Thompson, R J / Thompson, A S / Thomsen, L A / Thomson, E / Thomson, M / Thun, R P / Tibbetts, M J / Ticse Torres, R E / Tikhomirov, V O / Tikhonov, Yu A / Timoshenko, S / Tiouchichine, E / Tipton, P / Tisserant, S / Todome, K / Todorov, T / Todorova-Nova, S / Tojo, J / Tokár, S / Tokushuku, K / Tollefson, K / Tolley, E / Tomlinson, L / Tomoto, M / Tompkins, L / Toms, K / Torrence, E / Torres, H / Torró Pastor, E / Toth, J / Touchard, F / Tovey, D R / Trefzger, T / Tremblet, L / Tricoli, A / Trigger, I M / Trincaz-Duvoid, S / Tripiana, M F / Trischuk, W / Trocmé, B / Troncon, C / Trottier-McDonald, M / Trovatelli, M / True, P / Truong, L / Trzebinski, M / Trzupek, A / Tsarouchas, C / Tseng, J C-L / Tsiareshka, P V / Tsionou, D / Tsipolitis, G / Tsirintanis, N / Tsiskaridze, S / Tsiskaridze, V / Tskhadadze, E G / Tsukerman, I I / Tsulaia, V / Tsuno, S / Tsybychev, D / Tudorache, A / Tudorache, V / Tuna, A N / Tupputi, S A / Turchikhin, S / Turecek, D / Turra, R / Turvey, A J / Tuts, P M / Tykhonov, A / Tylmad, M / Tyndel, M / Ueda, I / Ueno, R / Ughetto, M / Ugland, M / Ukegawa, F / Unal, G / Undrus, A / Unel, G / Ungaro, F C / Unno, Y / Unverdorben, C / Urban, J / Urquijo, P / Urrejola, P / Usai, G / Usanova, A / Vacavant, L / Vacek, V / Vachon, B / Valderanis, C / Valencic, N / Valentinetti, S / Valero, A / Valery, L / Valkar, S / Valladolid Gallego, E / Vallecorsa, S / Valls Ferrer, J A / Van Den Wollenberg, W / Van Der Deijl, P C / van der Geer, R / van der Graaf, H / van Eldik, N / van Gemmeren, P / Van Nieuwkoop, J / van Vulpen, I / van Woerden, M C / Vanadia, M / Vandelli, W / Vanguri, R / Vaniachine, A / Vannucci, F / Vardanyan, G / Vari, R / Varnes, E W / Varol, T / Varouchas, D / Vartapetian, A / Varvell, K E / Vazeille, F / Vazquez Schroeder, T / Veatch, J / Veloce, L M / Veloso, F / Velz, T / Veneziano, S / Ventura, A / Ventura, D / Venturi, M / Venturi, N / Venturini, A / Vercesi, V / Verducci, M / Verkerke, W / Vermeulen, J C / Vest, A / Vetterli, M C / Viazlo, O / Vichou, I / Vickey, T / Vickey Boeriu, O E / Viehhauser, G H A / Viel, S / Vigne, R / Villa, M / Villaplana Perez, M / Vilucchi, E / Vincter, M G / Vinogradov, V B / Vivarelli, I / Vives Vaque, F / Vlachos, S / Vladoiu, D / Vlasak, M / Vogel, M / Vokac, P / Volpi, G / Volpi, M / von der Schmitt, H / von Radziewski, H / von Toerne, E / Vorobel, V / Vorobev, K / Vos, M / Voss, R / Vossebeld, J H / Vranjes, N / Vranjes Milosavljevic, M / Vrba, V / Vreeswijk, M / Vuillermet, R / Vukotic, I / Vykydal, Z / Wagner, P / Wagner, W / Wahlberg, H / Wahrmund, S / Wakabayashi, J / Walder, J / Walker, R / Walkowiak, W / Wang, C / Wang, F / Wang, H / Wang, J / Wang, K / Wang, R / Wang, S M / Wang, T / Wang, X / Wanotayaroj, C / Warburton, A / Ward, C P / Wardrope, D R / Washbrook, A / Wasicki, C / Watkins, P M / Watson, A T / Watson, I J / Watson, M F / Watts, G / Watts, S / Waugh, B M / Webb, S / Weber, M S / Weber, S W / Webster, J S / Weidberg, A R / Weinert, B / Weingarten, J / Weiser, C / Weits, H / Wells, P S / Wenaus, T / Wengler, T / Wenig, S / Wermes, N / Werner, M / Werner, P / Wessels, M / Wetter, J / Whalen, K / Wharton, A M / White, A / White, M J / White, R / White, S / Whiteson, D / Wickens, F J / Wiedenmann, W / Wielers, M / Wienemann, P / Wiglesworth, C / Wiik-Fuchs, L A M / Wildauer, A / Wilkens, H G / Williams, H H / Williams, S / Willis, C / Willocq, S / Wilson, A / Wilson, J A / Wingerter-Seez, I / Winklmeier, F / Winter, B T / Wittgen, M / Wittkowski, J / Wollstadt, S J / Wolter, M W / Wolters, H / Wosiek, B K / Wotschack, J / Woudstra, M J / Wozniak, K W / Wu, M / Wu, S L / Wu, X / Wu, Y / Wyatt, T R / Wynne, B M / Xella, S / Xu, D / Xu, L / Yabsley, B / Yacoob, S / Yakabe, R / Yamada, M / Yamaguchi, D / Yamaguchi, Y / Yamamoto, A / Yamamoto, S / Yamanaka, T / Yamauchi, K / Yamazaki, Y / Yan, Z / Yang, H / Yang, Y / Yao, W-M / Yasu, Y / Yatsenko, E / Yau Wong, K H / Ye, J / Ye, S / Yeletskikh, I / Yen, A L / Yildirim, E / Yorita, K / Yoshida, R / Yoshihara, K / Young, C / Young, C J S / Youssef, S / Yu, D R / Yu, J / Yu, J M / Yuan, L / Yuen, S P Y / Yurkewicz, A / Yusuff, I / Zabinski, B / Zaidan, R / Zaitsev, A M / Zalieckas, J / Zaman, A / Zambito, S / Zanello, L / Zanzi, D / Zeitnitz, C / Zeman, M / Zemla, A / Zeng, Q / Zengel, K / Zenin, O / Ženiš, T / Zerwas, D / Zhang, D / Zhang, F / Zhang, H / Zhang, J / Zhang, L / Zhang, R / Zhang, X / Zhang, Z / Zhao, X / Zhao, Y / Zhao, Z / Zhemchugov, A / Zhong, J / Zhou, B / Zhou, C / Zhou, L / Zhou, N / Zhu, C G / Zhu, H / Zhu, J / Zhu, Y / Zhuang, X / Zhukov, K / Zibell, A / Zieminska, D / Zimine, N I / Zimmermann, C / Zimmermann, S / Zinonos, Z / Zinser, M / Ziolkowski, M / Živković, L / Zobernig, G / Zoccoli, A / zur Nedden, M / Zurzolo, G / Zwalinski, L

Physical review letters

2015 Volume 115, Issue 26, Page(s) 262001

Abstract: ... the exclusive decays B(s)(0)→J/ψϕ and B(d)(0)→J/ψK(*0) of B mesons produced in pp collisions at √s=7 TeV are ... used to determine the ratio of fragmentation fractions f(s)/f(d). From the observed B(s)(0)→J/ψϕ and B ... d)(0)→J/ψK(*0) yields, the quantity (f(s)/f(d))[B(B(s)(0)→J/ψϕ)/B(B(d)(0)→J/ψK(*0))] is measured ...

Abstract	With an integrated luminosity of 2.47 fb(-1) recorded by the ATLAS experiment at the LHC, the exclusive decays B(s)(0)→J/ψϕ and B(d)(0)→J/ψK(0) of B mesons produced in pp collisions at √s=7 TeV are used to determine the ratio of fragmentation fractions f(s)/f(d). From the observed B(s)(0)→J/ψϕ and B(d)(0)→J/ψK(0) yields, the quantity (f(s)/f(d))[B(B(s)(0)→J/ψϕ)/B(B(d)(0)→J/ψK(0))] is measured to be 0.199±0.004(stat)±0.008(syst). Using a recent theory prediction for [B(B(s)(0)→J/ψϕ)/B(B(d)(0)→J/ψK(0))] yields (f(s)/f(d))=0.240±0.004(stat)±0.010(syst)±0.017(th). This result is based on a new approach that provides a significant improvement of the world average.
Language	English
Publishing date	2015-12-31
Publishing country	United States
Document type	Journal Article
ZDB-ID	208853-8
ISSN	1079-7114 ; 0031-9007
ISSN (online)	1079-7114
ISSN	0031-9007
DOI	10.1103/PhysRevLett.115.262001
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Article ; Online: Spatial regulation of Drosophila ovarian Follicle Stem Cell division rates and cell cycle transitions.

Melamed, David / Choi, Aaron / Reilein, Amy / Tavaré, Simon / Kalderon, Daniel

PLoS genetics

2023 Volume 19, Issue 9, Page(s) e1010965

Abstract: Drosophila ovarian Follicle Stem Cells (FSCs) present a favorable paradigm for understanding how stem cell division and differentiation are balanced in communities where those activities are independent. FSCs also allow exploration of how this balance is ...

Abstract	Drosophila ovarian Follicle Stem Cells (FSCs) present a favorable paradigm for understanding how stem cell division and differentiation are balanced in communities where those activities are independent. FSCs also allow exploration of how this balance is integrated with spatial stem cell heterogeneity. Posterior FSCs become proliferative Follicle Cells (FCs), while anterior FSCs become quiescent Escort Cells (ECs) at about one fourth the frequency. A single stem cell can nevertheless produce both FCs and ECs because it can move between anterior and posterior locations. Studies based on EdU incorporation to approximate division rates suggested that posterior FSCs divide faster than anterior FSCs. However, direct measures of cell cycle times are required to ascertain whether FC output requires a net flow of FSCs from anterior to posterior. Here, by using live imaging and FUCCI cell-cycle reporters, we measured absolute division rates. We found that posterior FSCs cycle more than three times faster than anterior FSCs and produced sufficient new cells to match FC production. H2B-RFP dilution studies supported different cycling rates according to A/P location and facilitated live imaging, showing A/P exchange of FSCs in both directions, consistent with the dynamic equilibrium inferred from division rate measurements. Inversely graded Wnt and JAK-STAT pathway signals regulate FSC differentiation to ECs and FCs. JAK-STAT promotes both differentiation to FCs and FSC cycling, affording some coordination of these activities. When JAK-STAT signaling was manipulated to be spatially uniform, the ratio of posterior to anterior division rates was reduced but remained substantial, showing that graded JAK-STAT signaling only partly explains the graded cycling of FSCs. By using FUCCI markers, we found a prominent G2/M cycling restriction of posterior FSCs together with an A/P graded G1/S restriction, that JAK-STAT signaling promotes both G1/S and G2/M transitions, and that PI3 kinase signaling principally stimulates the G2/M transition.
MeSH term(s)	Animals ; Female ; Drosophila/genetics ; Drosophila/metabolism ; Drosophila melanogaster/metabolism ; Drosophila Proteins/genetics ; Signal Transduction ; Janus Kinases/genetics ; Janus Kinases/metabolism ; STAT Transcription Factors/genetics ; STAT Transcription Factors/metabolism ; Ovarian Follicle/metabolism ; Cell Self Renewal ; Cell Division/genetics
Chemical Substances	Drosophila Proteins ; Janus Kinases (EC 2.7.10.2) ; STAT Transcription Factors
Language	English
Publishing date	2023-09-25
Publishing country	United States
Document type	Journal Article ; Research Support, N.I.H., Extramural
ZDB-ID	2186725-2
ISSN	1553-7404 ; 1553-7390
ISSN (online)	1553-7404
ISSN	1553-7390
DOI	10.1371/journal.pgen.1010965
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Article ; Online: Correction: Spatial regulation of Drosophila ovarian Follicle Stem Cell division rates and cell cycle transitions.

Melamed, David / Choi, Aaron / Reilein, Amy / Tavaré, Simon / Kalderon, Daniel

PLoS genetics

2023 Volume 19, Issue 11, Page(s) e1011040

Abstract: This corrects the article DOI: 10.1371/journal.pgen.1010965.]. ...

Abstract	[This corrects the article DOI: 10.1371/journal.pgen.1010965.].
Language	English
Publishing date	2023-11-13
Publishing country	United States
Document type	Published Erratum
ZDB-ID	2186725-2
ISSN	1553-7404 ; 1553-7390
ISSN (online)	1553-7404
ISSN	1553-7390
DOI	10.1371/journal.pgen.1011040
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Article ; Online: Opposing JAK-STAT and Wnt signaling gradients define a stem cell domain by regulating differentiation at two borders.

Melamed, David / Kalderon, Daniel

eLife

2020 Volume 9

Abstract: Many adult stem cell communities are maintained by population asymmetry, where stochastic behaviors of multiple individual cells collectively result in a balance between stem cell division and differentiation. We investigated how this is achieved ... ...

Abstract	Many adult stem cell communities are maintained by population asymmetry, where stochastic behaviors of multiple individual cells collectively result in a balance between stem cell division and differentiation. We investigated how this is achieved for
MeSH term(s)	Animals ; Cell Differentiation ; Drosophila melanogaster/genetics ; Drosophila melanogaster/metabolism ; Genotype ; Janus Kinases/genetics ; Janus Kinases/metabolism ; STAT Transcription Factors/genetics ; STAT Transcription Factors/metabolism ; Stem Cells ; Wnt Proteins/genetics ; Wnt Proteins/metabolism ; Wnt Signaling Pathway/physiology
Chemical Substances	STAT Transcription Factors ; Wnt Proteins ; Janus Kinases (EC 2.7.10.2)
Language	English
Publishing date	2020-11-02
Publishing country	England
Document type	Journal Article ; Research Support, N.I.H., Extramural
ZDB-ID	2687154-3
ISSN	2050-084X ; 2050-084X
ISSN (online)	2050-084X
ISSN	2050-084X
DOI	10.7554/eLife.61204
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Article ; Online: Single-cell expression profile of Drosophila ovarian follicle stem cells illuminates spatial differentiation in the germarium.

Dong, Zhi / Pang, Lan / Liu, Zhiguo / Sheng, Yifeng / Li, Xiaoping / Thibault, Xavier / Reilein, Amy / Kalderon, Daniel / Huang, Jianhua

BMC biology

2023 Volume 21, Issue 1, Page(s) 143

Abstract: Background: How stem cell populations are organized and regulated within adult tissues is important for understanding cancer origins and for developing cell replacement strategies. Paradigms such as mammalian gut stem cells and Drosophila ovarian ... ...

Abstract	Background: How stem cell populations are organized and regulated within adult tissues is important for understanding cancer origins and for developing cell replacement strategies. Paradigms such as mammalian gut stem cells and Drosophila ovarian follicle stem cells (FSC) are characterized by population asymmetry, in which stem cell division and differentiation are separately regulated processes. These stem cells behave stochastically regarding their contributions to derivative cells and also exhibit dynamic spatial heterogeneity. Drosophila FSCs provide an excellent model for understanding how a community of active stem cells maintained by population asymmetry is regulated. Here, we use single-cell RNA sequencing to profile the gene expression patterns of FSCs and their immediate derivatives to investigate heterogeneity within the stem cell population and changes associated with differentiation. Results: We describe single-cell RNA sequencing studies of a pre-sorted population of cells that include FSCs and the neighboring cell types, escort cells (ECs) and follicle cells (FCs), which they support. Cell-type assignment relies on anterior-posterior (AP) location within the germarium. We clarify the previously determined location of FSCs and use spatially targeted lineage studies as further confirmation. The scRNA profiles among four clusters are consistent with an AP progression from anterior ECs through posterior ECs and then FSCs, to early FCs. The relative proportion of EC and FSC clusters are in good agreement with the prevalence of those cell types in a germarium. Several genes with graded profiles from ECs to FCs are highlighted as candidate effectors of the inverse gradients of the two principal signaling pathways, Wnt and JAK-STAT, that guide FSC differentiation and division. Conclusions: Our data establishes an important resource of scRNA-seq profiles for FSCs and their immediate derivatives that is based on precise spatial location and functionally established stem cell identity, and facilitates future genetic investigation of regulatory interactions guiding FSC behavior.
MeSH term(s)	Animals ; Female ; Drosophila/metabolism ; Drosophila melanogaster/metabolism ; Drosophila Proteins/metabolism ; Cell Differentiation/genetics ; Ovarian Follicle ; Stem Cells/metabolism ; Mammals
Chemical Substances	Drosophila Proteins
Language	English
Publishing date	2023-06-20
Publishing country	England
Document type	Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, N.I.H., Extramural
ZDB-ID	2133020-7
ISSN	1741-7007 ; 1741-7007
ISSN (online)	1741-7007
ISSN	1741-7007
DOI	10.1186/s12915-023-01636-9
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Article ; Online: Drosophila

Little, Jamie C / Garcia-Garcia, Elisa / Sul, Amanda / Kalderon, Daniel

eLife

2020 Volume 9

Abstract: Extracellular Hedgehog (Hh) proteins induce transcriptional changes in target cells by inhibiting the proteolytic processing of full- ... ...

Abstract	Extracellular Hedgehog (Hh) proteins induce transcriptional changes in target cells by inhibiting the proteolytic processing of full-length
MeSH term(s)	Animals ; Animals, Genetically Modified ; CRISPR-Cas Systems ; Cloning, Molecular ; Cyclic AMP-Dependent Protein Kinases/genetics ; Cyclic AMP-Dependent Protein Kinases/metabolism ; DNA-Binding Proteins/genetics ; DNA-Binding Proteins/metabolism ; Drosophila Proteins/genetics ; Drosophila Proteins/metabolism ; Drosophila melanogaster ; Female ; Gene Expression Regulation/physiology ; Genotype ; Hedgehog Proteins/genetics ; Hedgehog Proteins/metabolism ; Imaginal Discs/metabolism ; Intracellular Signaling Peptides and Proteins/genetics ; Intracellular Signaling Peptides and Proteins/metabolism ; Kinesin/genetics ; Kinesin/metabolism ; Male ; Repressor Proteins/genetics ; Repressor Proteins/metabolism ; Signal Transduction ; Transcription Factors/genetics ; Transcription Factors/metabolism
Chemical Substances	DNA-Binding Proteins ; Drosophila Proteins ; Hedgehog Proteins ; Intracellular Signaling Peptides and Proteins ; Rdx protein, Drosophila ; Repressor Proteins ; Su(fu) protein, Drosophila ; Transcription Factors ; ci protein, Drosophila ; cos protein, Drosophila ; hh protein, Drosophila (149291-21-4) ; Cyclic AMP-Dependent Protein Kinases (EC 2.7.11.11) ; Kinesin (EC 3.6.4.4)
Language	English
Publishing date	2020-10-21
Publishing country	England
Document type	Journal Article ; Research Support, N.I.H., Extramural
ZDB-ID	2687154-3
ISSN	2050-084X ; 2050-084X
ISSN (online)	2050-084X
ISSN	2050-084X
DOI	10.7554/eLife.61083
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Article ; Online: Adult stem cells and niche cells segregate gradually from common precursors that build the adult

Reilein, Amy / Kogan, Helen V / Misner, Rachel / Park, Karen Sophia / Kalderon, Daniel

eLife

2021 Volume 10

Abstract: Production of proliferative follicle cells (FCs) and quiescent escort cells (ECs) by follicle stem cells (FSCs) in ... ...

Abstract	Production of proliferative follicle cells (FCs) and quiescent escort cells (ECs) by follicle stem cells (FSCs) in adult
MeSH term(s)	Animals ; Drosophila melanogaster/growth & development ; Female ; Ovary/growth & development ; Pupa/growth & development ; Stem Cells/metabolism
Language	English
Publishing date	2021-09-30
Publishing country	England
Document type	Journal Article ; Research Support, N.I.H., Extramural
ZDB-ID	2687154-3
ISSN	2050-084X ; 2050-084X
ISSN (online)	2050-084X
ISSN	2050-084X
DOI	10.7554/eLife.69749
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Article ; Online: Dissection and Staining of Drosophila Pupal Ovaries.

Park, Karen Sophia / Godt, Dorothea / Kalderon, Daniel

Journal of visualized experiments : JoVE

2018 , Issue 133

Abstract: Unlike adult Drosophila ovaries, pupal ovaries are relatively difficult to access and examine due to their small size, translucence, and encasing within a pupal case. The challenge of dissecting pupal ovaries also lies in their physical location within ... ...

Abstract	Unlike adult Drosophila ovaries, pupal ovaries are relatively difficult to access and examine due to their small size, translucence, and encasing within a pupal case. The challenge of dissecting pupal ovaries also lies in their physical location within the pupa: the ovaries are surrounded by fat body cells inside the pupal abdomen, and these fat cells must be removed to allow for proper antibody staining. To overcome these challenges, this protocol utilizes customized Pasteur pipets to extract fat body cells from the pupal abdomen. Moreover, a chambered coverglass is used in place of a microcentrifuge tube during the staining process to improve visibility of the pupae. However, despite these and other advantages of the tools used in this protocol, successful execution of these techniques may still involve several days of practice due to the small size of pupal ovaries. The techniques outlined in this protocol could be applied to time course experiments in which ovaries are analyzed at various stages of pupal development.
MeSH term(s)	Animals ; Dissection/methods ; Drosophila/embryology ; Drosophila/growth & development ; Female ; Ovary/surgery ; Pupa/cytology ; Pupa/metabolism ; Staining and Labeling/methods
Language	English
Publishing date	2018-03-02
Publishing country	United States
Document type	Journal Article ; Research Support, N.I.H., Extramural ; Video-Audio Media
ISSN	1940-087X
ISSN (online)	1940-087X
DOI	10.3791/56779
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Article ; Online: Division-independent differentiation mandates proliferative competition among stem cells.

Reilein, Amy / Melamed, David / Tavaré, Simon / Kalderon, Daniel

Proceedings of the National Academy of Sciences of the United States of America

2018 Volume 115, Issue 14, Page(s) E3182–E3191

Abstract: Cancer-initiating gatekeeper mutations that arise in stem cells would be especially potent if they stabilize and expand an affected stem cell lineage. It is therefore important to understand how different stem cell organization strategies promote or ... ...

Abstract	Cancer-initiating gatekeeper mutations that arise in stem cells would be especially potent if they stabilize and expand an affected stem cell lineage. It is therefore important to understand how different stem cell organization strategies promote or prevent variant stem cell amplification in response to different types of mutation, including those that activate proliferation. Stem cell numbers can be maintained constant while producing differentiated products through individually asymmetrical division outcomes or by population asymmetry strategies in which individual stem cell lineages necessarily compete for niche space. We considered alternative mechanisms underlying population asymmetry and used quantitative modeling to predict starkly different consequences of altering proliferation rate: A variant, faster proliferating mutant stem cell should compete better only when stem cell division and differentiation are independent processes. For most types of stem cells, it has not been possible to ascertain experimentally whether division and differentiation are coupled. However,
MeSH term(s)	Animals ; Cell Differentiation ; Cell Lineage ; Cell Proliferation ; Drosophila Proteins/metabolism ; Drosophila melanogaster/cytology ; Drosophila melanogaster/metabolism ; Female ; Ovarian Follicle/cytology ; Ovarian Follicle/metabolism ; Stem Cell Niche/physiology ; Stem Cells/cytology ; Stem Cells/metabolism
Chemical Substances	Drosophila Proteins
Language	English
Publishing date	2018-03-19
Publishing country	United States
Document type	Journal Article ; Research Support, N.I.H., Extramural
ZDB-ID	209104-5
ISSN	1091-6490 ; 0027-8424
ISSN (online)	1091-6490
ISSN	0027-8424
DOI	10.1073/pnas.1718646115
Database	MEDical Literature Analysis and Retrieval System OnLINE

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