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  1. Article ; Online: Categorisation of continuous covariates for stratified randomisation: How should we adjust?

    Sullivan, Thomas R / Morris, Tim P / Kahan, Brennan C / Cuthbert, Alana R / Yelland, Lisa N

    Statistics in medicine

    2024  

    Abstract: To obtain valid inference following stratified randomisation, treatment effects should be estimated with adjustment for stratification variables. Stratification sometimes requires categorisation of a continuous prognostic variable (eg, age), which raises ...

    Abstract To obtain valid inference following stratified randomisation, treatment effects should be estimated with adjustment for stratification variables. Stratification sometimes requires categorisation of a continuous prognostic variable (eg, age), which raises the question: should adjustment be based on randomisation categories or underlying continuous values? In practice, adjustment for randomisation categories is more common. We reviewed trials published in general medical journals and found none of the 32 trials that stratified randomisation based on a continuous variable adjusted for continuous values in the primary analysis. Using data simulation, this article evaluates the performance of different adjustment strategies for continuous and binary outcomes where the covariate-outcome relationship (via the link function) was either linear or non-linear. Given the utility of covariate adjustment for addressing missing data, we also considered settings with complete or missing outcome data. Analysis methods included linear or logistic regression with no adjustment for the stratification variable, adjustment for randomisation categories, or adjustment for continuous values assuming a linear covariate-outcome relationship or allowing for non-linearity using fractional polynomials or restricted cubic splines. Unadjusted analysis performed poorly throughout. Adjustment approaches that misspecified the underlying covariate-outcome relationship were less powerful and, alarmingly, biased in settings where the stratification variable predicted missing outcome data. Adjustment for randomisation categories tends to involve the highest degree of misspecification, and so should be avoided in practice. To guard against misspecification, we recommend use of flexible approaches such as fractional polynomials and restricted cubic splines when adjusting for continuous stratification variables in randomised trials.
    Language English
    Publishing date 2024-03-15
    Publishing country England
    Document type Journal Article
    ZDB-ID 843037-8
    ISSN 1097-0258 ; 0277-6715
    ISSN (online) 1097-0258
    ISSN 0277-6715
    DOI 10.1002/sim.10060
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: THE ROLE OF SCHOOLS IN MENINGOCOCCAL CARRIAGE AMONG ADOLESCENTS AND YOUNG ADULTS IN SOUTH AUSTRALIA.

    Mohammed, Hassen / Peut, Christian / McMillan, Mark / Wang, Bing / Sullivan, Thomas R / Marshall, Helen S

    The Pediatric infectious disease journal

    2024  

    Abstract: Neisseria meningitidis carriage peaks in adolescents. This secondary analysis of a randomized controlled trial (NCT03089086) assessing 4CMenB herd protection in South Australia ("B-Part-of-It" study) explored school attributes linked to baseline carriage ...

    Abstract Neisseria meningitidis carriage peaks in adolescents. This secondary analysis of a randomized controlled trial (NCT03089086) assessing 4CMenB herd protection in South Australia ("B-Part-of-It" study) explored school attributes linked to baseline carriage in 34,489 adolescents prevaccination. Carriage was higher in students attending single-sex [adjusted odds ratio (aOR): 1.49; 95% confidence interval (CI): 1.14-1.93], boarding (aOR: 1.92; 1.13-3.27) and government schools (aOR: 1.32, 1.09-1.61).
    Language English
    Publishing date 2024-04-10
    Publishing country United States
    Document type Journal Article
    ZDB-ID 392481-6
    ISSN 1532-0987 ; 0891-3668
    ISSN (online) 1532-0987
    ISSN 0891-3668
    DOI 10.1097/INF.0000000000004362
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Partially clustered designs for clinical trials: Unifying existing designs using consistent terminology.

    Lange, Kylie M / Kasza, Jessica / Sullivan, Thomas R / Yelland, Lisa N

    Clinical trials (London, England)

    2023  Volume 20, Issue 2, Page(s) 99–110

    Abstract: Introduction: Clinical trial designs based on the assumption of independent observations are well established. Clustered clinical trial designs, where all observational units belong to a cluster and outcomes within clusters are expected to be correlated, ...

    Abstract Introduction: Clinical trial designs based on the assumption of independent observations are well established. Clustered clinical trial designs, where all observational units belong to a cluster and outcomes within clusters are expected to be correlated, have also received considerable attention. However, many clinical trials involve partially clustered data, where only some observational units belong to a cluster. Examples of such trials occur in neonatology, where participants include infants from both singleton and multiple births, and ophthalmology, where one or two eyes per participant may need treatment. Partial clustering can also arise in trials of group-based treatments (e.g. group education or counselling sessions) or treatments administered individually by a discrete number of health care professionals (e.g. surgeons or physical therapists), when this is compared to an unclustered control arm. Trials involving partially clustered data have received limited attention in the literature and the current lack of standardised terminology may be hampering the development and dissemination of methods for designing and analysing these trials.
    Methods and examples: In this article, we present an overarching definition of partially clustered trials, bringing together several existing trial designs including those for group-based treatments, clustering due to facilitator effects and the re-randomisation design. We define and describe four types of partially clustered trial designs, characterised by whether the clustering occurs pre-randomisation or post-randomisation and, in the case of pre-randomisation clustering, by the method of randomisation that is used for the clustered observations (individual randomisation, cluster randomisation or balanced randomisation within clusters). Real life examples are provided to highlight the occurrence of partially clustered trials across a variety of fields. To assess how partially clustered trials are currently reported, we review published reports of partially clustered trials.
    Discussion: Our findings demonstrate that the description of these trials is often incomplete and the terminology used to describe the trial designs is inconsistent, restricting the ability to identify these trials in the literature. By adopting the definitions and terminology presented in this article, the reporting of partially clustered trials can be substantially improved, and we present several recommendations for reporting these trial designs in practice. Greater awareness of partially clustered trials will facilitate more methodological research into their design and analysis, ultimately improving the quality of these trials.
    MeSH term(s) Humans ; Infant ; Cluster Analysis ; Research Design ; Clinical Trials as Topic
    Language English
    Publishing date 2023-01-10
    Publishing country England
    Document type Review ; Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2138796-5
    ISSN 1740-7753 ; 1740-7745
    ISSN (online) 1740-7753
    ISSN 1740-7745
    DOI 10.1177/17407745221146987
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Experimental Investigation of the Influence of Positive Emotion Dysregulation on Risky Behavior Following Idiographic Emotion Inductions.

    Weiss, Nicole H / Schick, Melissa R / Raudales, Alexa M / Forkus, Shannon R / Thomas, Emmanuel D / Contractor, Ateka A / Sullivan, Tami P

    Clinical psychological science : a journal of the Association for Psychological Science

    2023  Volume 11, Issue 3, Page(s) 490–508

    Abstract: An experimental paradigm with subjective and objective assessments was used to further explicate the role of positive emotion dysregulation on risky behavior. Participants were 151 community women currently experiencing intimate partner violence and ... ...

    Abstract An experimental paradigm with subjective and objective assessments was used to further explicate the role of positive emotion dysregulation on risky behavior. Participants were 151 community women currently experiencing intimate partner violence and using substances (
    Language English
    Publishing date 2023-01-10
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2682220-9
    ISSN 2167-7034 ; 2167-7026
    ISSN (online) 2167-7034
    ISSN 2167-7026
    DOI 10.1177/21677026221133295
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Book: Early medieval agriculture, livestock and cereal production in Ireland, AD 400-1100

    McCormick, Finbar / Kerr, Thomas R. / McClatchie, Meriel / O'Sullivan, Aidan

    (BAR international series ; 2647)

    2014  

    Author's details Finbar McCormick, Thomas R. Kerr, Meriel McClatchie, Aidan O'Sullivan
    Series title BAR international series ; 2647
    BAR
    Collection BAR
    Keywords Agriculture/History ; Livestock/History ; Grain/History ; Excavations (Archaeology) ; Ireland
    Subject code 941.501
    Language English
    Size XII, 688 S. : Ill., graph. Darst., Kt., 30 cm
    Publisher BAR
    Publishing place Oxford
    Publishing country Great Britain
    Document type Book
    Note Includes bibliographical references
    HBZ-ID HT018363147
    ISBN 978-1-4073-1286-6 ; 1-4073-1286-3
    Database Catalogue ZB MED Nutrition, Environment, Agriculture

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  6. Article ; Online: Induced optimism to lessen hopelessness-related cognitions among young adults at risk for suicidal thoughts and behavior.

    Matuza, Thomas / Shikh, Allan / Sullivan, Sarah R / Wheeler, Alyssa / Miranda, Regina

    Journal of affective disorders reports

    2023  Volume 14

    Abstract: Background: Hopelessness is one of the best-studied cognitive predictors of depression and suicide. Previous research suggests that hopelessness may develop through repetitive thinking about the occurrence of positive and negative future outcomes. The ... ...

    Abstract Background: Hopelessness is one of the best-studied cognitive predictors of depression and suicide. Previous research suggests that hopelessness may develop through repetitive thinking about the occurrence of positive and negative future outcomes. The present study sought to investigate whether mental rehearsal in making optimistic future-event predictions, or
    Methods: Participants with (
    Results: Findings offered modest support for the hypothesis that induced optimism would decrease hopelessness but not improve mood; this was regardless of history of suicide ideation or attempts.
    Limitations: The sample was predominantly female, and assessment of suicide ideation and attempt history was not confirmed by clinical interview, which may limit generalizability.
    Conclusion: Practice in making optimistic future-event predictions over time may be one way to reduce the hopelessness-related cognitions that confer vulnerability to suicide ideation and behavior.
    Language English
    Publishing date 2023-10-10
    Publishing country Netherlands
    Document type Journal Article
    ISSN 2666-9153
    ISSN (online) 2666-9153
    DOI 10.1016/j.jadr.2023.100670
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Cannabidiol and hemp oils: Potential applications in oral and maxillofacial surgery.

    Sullivan, Scott R / Hammad, Yousef / Neal, Timothy W / Schlieve, Thomas

    Journal of the American Dental Association (1939)

    2022  Volume 153, Issue 12, Page(s) 1111–1113

    MeSH term(s) Humans ; Cannabidiol/therapeutic use ; Cannabis ; Plant Oils ; Surgery, Oral
    Chemical Substances Cannabidiol (19GBJ60SN5) ; hempseed oil (69VJ1LPN1S) ; Plant Oils
    Language English
    Publishing date 2022-09-26
    Publishing country England
    Document type Editorial
    ZDB-ID 220622-5
    ISSN 1943-4723 ; 0002-8177 ; 1048-6364
    ISSN (online) 1943-4723
    ISSN 0002-8177 ; 1048-6364
    DOI 10.1016/j.adaj.2022.08.009
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Longitudinal study of meningococcal carriage in adolescents and young adults in South Australia 2017-2020.

    McMillan, Mark / Mohammed, Hassen / Bednarz, Jana / Leong, Lex E X / Lawrence, Andrew / Sullivan, Thomas R / Maiden, Martin C J / Marshall, Helen S

    The Journal of infection

    2024  Volume 88, Issue 2, Page(s) 149–157

    Abstract: Background: This analysis investigated longitudinal changes in meningococcal carriage in adolescents in South Australia over 4 years.: Methods: Data from the "B Part of It" study, which included a state-wide cluster randomized controlled trial in ... ...

    Abstract Background: This analysis investigated longitudinal changes in meningococcal carriage in adolescents in South Australia over 4 years.
    Methods: Data from the "B Part of It" study, which included a state-wide cluster randomized controlled trial in secondary-school students (n = 34,489 in 2017 and 2018) and serial cross-sectional studies in school leavers aged 17-25 years (n = 4028 in 2019-2020). Individuals had oropharyngeal swabs collected annually. This study included two unique cohorts: (1) individuals enrolled in 2019, with three consecutive annual swabs taken in 2017, 2018 and 2019; and (2) individuals enrolled in 2020, with swabs taken in 2017, 2018, and 2020. Disease-associated N. meningitidis genogroups were identified using PCR and whole genome sequencing. Univariate analysis identified risk factors for recurrent carriage (≥2).
    Results: Among school leavers, 50 (1.7%, total n = 2980) had carriage detected at successive visits. In participants with meningococcal carriage at successive visits, 38/50 (76.0%) had the same genogroup detected by porA PCR. Of those, 19 had the same MLST type and demonstrated minimal variation, indicating they most likely had sustained carriage of the same isolate (range 226 to 490 days, mean duration 352 [SD 51] days). In the 2019 school leaver cohort, 6.7% acquired carriage in their first year out of school compared to 3.3% in their final school year. Compared to single carriage detection, recurrent carriage was potentially more likely in older adolescents (16 compared to ≤15 years; OR = 1.97 (95%CI 1.0, 3.86); p = 0.048).
    Conclusion: Whilst carriage is typically transient, some adolescents/young adults may have persistent carriage and are likely to be an important group in the transmission of meningococci.
    MeSH term(s) Humans ; Adolescent ; Young Adult ; Meningococcal Infections/epidemiology ; South Australia/epidemiology ; Longitudinal Studies ; Cross-Sectional Studies ; Multilocus Sequence Typing ; Carrier State/epidemiology ; Prevalence ; Neisseria meningitidis/genetics
    Language English
    Publishing date 2024-01-17
    Publishing country England
    Document type Randomized Controlled Trial ; Journal Article
    ZDB-ID 424417-5
    ISSN 1532-2742 ; 0163-4453
    ISSN (online) 1532-2742
    ISSN 0163-4453
    DOI 10.1016/j.jinf.2024.01.002
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Too Much Too Little: Clarifying the Relationship Between Maternal Iodine Intake and Neurodevelopmental Outcomes.

    Sullivan, Thomas R / Best, Karen P / Gould, Jacqueline / Zhou, Shao J / Makrides, Maria / Green, Tim J

    The Journal of nutrition

    2023  Volume 154, Issue 1, Page(s) 185–190

    Abstract: Background: In 2009, the Australian government mandated the fortification of bread salt with iodine. In 2010, pregnant and lactating women were also advised to take an iodine-containing supplement. Our assessment of this policy in an iodine-sufficient ... ...

    Abstract Background: In 2009, the Australian government mandated the fortification of bread salt with iodine. In 2010, pregnant and lactating women were also advised to take an iodine-containing supplement. Our assessment of this policy in an iodine-sufficient population showed that children whose mothers were in the highest and lowest quartiles of iodine intake performed more poorly on early childhood tests of cognition and language than those in the second quartile. However, we did not quantify the iodine intake associated with optimal neurodevelopment.
    Objectives: The aim was to establish the iodine intake range in pregnancy associated with optimal child neurodevelopment.
    Methods: A prospective cohort study of pregnant women and their young children (n = 699). Iodine intake was assessed by a validated food frequency questionnaire at 16 and 28 wk of gestation. Child neurodevelopment at 18 mo of age was measured using the Bayley Scales of Infant and Toddler Development, Third Edition (Bayley-III). The relationship between average iodine intake during pregnancy and child neurodevelopment was assessed using linear regression with fractional polynomials and adjustment for confounders.
    Results: Mean (SD) iodine intake was similar at study entry and 28 wk, 308 (120) μg/d, with 82% of women taking iodine supplements at study entry. The relationship between iodine intake during pregnancy and Bayley-III cognitive and language scores was curvilinear (P = 0.001 and P = 0.004, respectively), with the lowest Bayley-III scores observed at lower and higher iodine intakes. The inflection point that drove the association between lower iodine intake in pregnancy and poorer child neurodevelopment scores was around 185 μg/d; for the higher pregnancy iodine intakes, language and cognitive scores were negatively affected from ∼350 μg/d to 370 μg/d, respectively. Higher iodine intakes were being driven by supplement use.
    Conclusions: Targeted, not blanket, iodine supplementation may be needed for pregnant women with low-iodine intake from food.
    MeSH term(s) Infant ; Humans ; Female ; Pregnancy ; Child, Preschool ; Prospective Studies ; Lactation ; Australia ; Dietary Supplements ; Iodine
    Chemical Substances Iodine (9679TC07X4)
    Language English
    Publishing date 2023-09-15
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 218373-0
    ISSN 1541-6100 ; 0022-3166
    ISSN (online) 1541-6100
    ISSN 0022-3166
    DOI 10.1016/j.tjnut.2023.09.008
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Variable preterm oral microbiome stabilizes and reflects a full-term infant profile within three months.

    Selway, Caitlin A / Collins, Carmel T / Makrides, Maria / Sullivan, Thomas R / Weyrich, Laura S

    Pediatric research

    2023  

    Abstract: Background: Preterm infants suffer higher morbidity and mortality rates compared to full-term infants, but little is known about how changes to oral and respiratory tract microbiota may impact disease development.: Methods: Here, very preterm ... ...

    Abstract Background: Preterm infants suffer higher morbidity and mortality rates compared to full-term infants, but little is known about how changes to oral and respiratory tract microbiota may impact disease development.
    Methods: Here, very preterm neonates (n = 50) were selected to study oral and respiratory microbiota development during the first few months post-birth, where 26 individuals were diagnosed with BPD and/or sepsis. These infants were compared to 14 healthy full-term infants and 16 adults. Microbiota diversity, composition, and species abundances were calculated from 16S ribosomal RNA gene sequences in buccal swabs and tracheal aspirates at two time points (within a week and 1-3 months post-birth).
    Results: Collection time point was the biggest factor to significantly influence the preterm oral microbial diversity and composition. In addition, BPD and sepsis were linked to distinct preterm oral microbiota diversity and composition, and opportunistic pathogens previously associated with these diseases were identified in the initial sample for both healthy preterm neonates and those with the disease. Compared to the full-term infant and adult dataset, preterm infant diversity and composition was initially significantly different, but resembled full-term infant diversity and composition over time.
    Conclusion: Overall, consequences of microbiota development need further examination in preterm infant infections and later development.
    Impact: Non-gut microbiota research on preterm infants is limited. At one week post-birth, preterm infants harbor distinct oral microbiota that are not shared with full-term children or adults, eventually becoming similar to full-term infants at 36 weeks postmenstrual age. DNA from potential opportunistic pathogens was observed in the mouth and lungs of preterm infants within a week of birth, and microbes associated with BPD were identified in the lungs. Oral microbiota in preterm infants over the first 2-3 months is unique and may be connected to short- and long-term health outcomes in these children.
    Language English
    Publishing date 2023-03-01
    Publishing country United States
    Document type Journal Article
    ZDB-ID 4411-8
    ISSN 1530-0447 ; 0031-3998
    ISSN (online) 1530-0447
    ISSN 0031-3998
    DOI 10.1038/s41390-023-02517-1
    Database MEDical Literature Analysis and Retrieval System OnLINE

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