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  1. Article ; Online: Investigating the synergistic role of heavy metals in Arsenic-induced skin lesions in West Bengal, India.

    Banerjee, Shuvam / Dhar, Shrinjana / Sudarshan, M / Chakraborty, Anindita / Bhattacharjee, Sandip / Bhattacharjee, Pritha

    Journal of trace elements in medicine and biology : organ of the Society for Minerals and Trace Elements (GMS)

    2022  Volume 75, Page(s) 127103

    Abstract: Background: Arsenic toxicity is one of the major health issues throughout the world. Approximately 108 countries that account for more than 230 million people worldwide are at high risk of arsenic poisoning mainly through drinking water and diet. ... ...

    Abstract Background: Arsenic toxicity is one of the major health issues throughout the world. Approximately 108 countries that account for more than 230 million people worldwide are at high risk of arsenic poisoning mainly through drinking water and diet. Chronic exposure to arsenic causes several pathophysiological end-points including skin lesions, peripheral neuropathy, cancer, etc. In India, the population living in the lower Gangetic basin possesses a great risk of arsenicosis and other diseases. Scientists are trying to understand the gene-environmental interactions behind arsenic toxicity revealing the potential role of genetic variants of individuals. Few pieces of the literature showed that the population is not exposed to a mixture of metals. Hence, in this study, an attempt has been made to explore whether some other metals play a synergistic role in As-induced toxicity.
    Methods: For this, an assessment of the level of heavy metals using ED-XRF in soil, vegetables from As-exposed areas along with quantification of the heavy metal concentration in human blood and hair of the As-exposed population were conducted.
    Results: Results show the concentration of urinary arsenic is very high signifying the magnitude of the exposure. In addition to this, the levels of iron (Fe), copper (Cu), chromium (Cr) were found to be very high in soil and Fe, manganese (Mn), lead (Pb) in vegetables were exceeding the WHO/FAO recommended permissible limit. However, Fe and zinc (Zn) were predominantly high in whole blood and hair of the arsenic-exposed population when compared with the control population.
    Conclusion: It can be confirmed that the population from Murshidabad is exposed to As and other heavy metals through drinking water as well as food. Particularly for this population, Fe, Zn and rubidium (Rb) may play a synergistic role in arsenic-induced toxicity. However, further studies on the large population-based investigation are required to establish the chemistry of the metal toxicity.
    MeSH term(s) Humans ; Arsenic/toxicity ; Drinking Water ; India ; Metals, Heavy/toxicity
    Chemical Substances Arsenic (N712M78A8G) ; Drinking Water ; Metals, Heavy
    Language English
    Publishing date 2022-11-11
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 1236267-0
    ISSN 1878-3252 ; 1611-602X ; 0946-672X
    ISSN (online) 1878-3252 ; 1611-602X
    ISSN 0946-672X
    DOI 10.1016/j.jtemb.2022.127103
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: The impact of human waste hair reprocessing occupation on environmental degradation-A case study from rural West Bengal, India.

    Mondal, Kousik Kr / Banerjee, Shuvam / Dhar, Shrinjana / Sudarshan, M / Bhattacharjee, Pritha

    Environmental geochemistry and health

    2020  Volume 42, Issue 10, Page(s) 3157–3170

    Abstract: Human hair is considered as a potential biowaste worldwide, and improper disposal of hair can create multiple environmental problems. Due to unique characteristic features, human waste hair can be efficiently utilized for versatile applications, from ... ...

    Abstract Human hair is considered as a potential biowaste worldwide, and improper disposal of hair can create multiple environmental problems. Due to unique characteristic features, human waste hair can be efficiently utilized for versatile applications, from agricultural industries to fashion industries. There is a huge business of human hair in many multinational countries and also in some rural areas of India. The continuous demand of such keratinous waste for human need in turn is producing residual waste at an alarming rate that causes environmental degradation. Therefore, our study aims to investigate the possible impacts of waste hair reprocessing activity on environmental health in rural India, citing examples from Radhapur village. Physico-chemical parameters of pond water and soil from the dumpsite were assessed. Along with this, elemental profile of waste hair, pond water and soil was estimated. To assess the deterioration of water quality, zooplankton diversity was also measured. Water quality index showed that the studied ponds are unsuitable for drinking purpose and aquaculture. The Shannon index further indicated comparatively lower diversity of zooplankton community in the studied ponds. Due to the presence of total organic carbon and available N-P-K, the soil can sustain the growth and survival of plants; however, the risk of toxic metal accumulation may be persisted. Hence, to enhance the utilization of waste hair in a large scale, a policy framework is extremely required that will incorporate environmental and social well-being and provide necessary support towards sustainable development. Future study needs to be carried out to eliminate the toxic elements from the water and soil using some phytoremediation strategies.
    MeSH term(s) Animals ; Barbering ; Biodiversity ; Environmental Health ; Environmental Monitoring ; Environmental Pollution/analysis ; Hair/chemistry ; Humans ; India ; Industrial Waste/analysis ; Ponds/chemistry ; Soil/chemistry ; Water Pollution/analysis ; Water Quality ; Zooplankton/drug effects ; Zooplankton/physiology
    Chemical Substances Industrial Waste ; Soil
    Language English
    Publishing date 2020-03-19
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 52039-1
    ISSN 1573-2983 ; 0142-7245 ; 0269-4042
    ISSN (online) 1573-2983
    ISSN 0142-7245 ; 0269-4042
    DOI 10.1007/s10653-020-00551-0
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Decoding the lethal effect of SARS-CoV-2 (novel coronavirus) strains from global perspective: molecular pathogenesis and evolutionary divergence

    Banerjee, Shuvam / Dhar, Shrinjana / Bhattacharjee, Sandip / Bhattacharjee, Pritha

    bioRxiv

    Abstract: Background COVID-19 is a disease with global public health emergency that have shook the world since its’ first detection in China in December, 2019. Severe acute respiratory syndrome Coronavirus 2 (SARS-CoV-2) is the pathogen responsible behind this ... ...

    Abstract Background COVID-19 is a disease with global public health emergency that have shook the world since its’ first detection in China in December, 2019. Severe acute respiratory syndrome Coronavirus 2 (SARS-CoV-2) is the pathogen responsible behind this pandemic. The lethality of different viral strains is found to vary in different geographical locations but the molecular mechanism is yet to be known. Methods Available data of whole genome sequencing of different viral strains published by different countries were retrieved and then analysed using Multiple Sequence Alignment and Pair-wise Sequence Alignment leading to Phylogenetic tree construction. Each location and the corresponding genetic variations were screened in depth. Then the variations are analysed at protein level giving special emphasis on Non Synonymous amino acid substitutions. The fatality rates in different countries were matched against the mutation number, rarity of the nucleotide alterations and functional impact of the Non Synonymous changes at protein level, separately and in combination. Findings All the viral strains have been found to evolve from the viral strain of Taiwan (MT192759) which is 100% identical with the ancestor SARS-CoV-2 sequences of Wuhan (NC 045512.2; submitted on 5th Jan, 2020). Transition from C to T (C>T) is the most frequent mutation in this viral genome and mutations A>T, G>A, T>A are the rarest ones, found in countries with maximum fatality rate i.e Italy, Spain and Sweden. 20 Non Synonymous mutations are located in viral genome spanning Orf1ab polyprotein, Surface glycoprotein, Nucleocapsid protein etc. The functional effect on the structure and function of the protein can favourably or unfavourably interact with the host body. Interpretation The fatality outcome depends on three important factors (a) number of mutation (b) rarity of the allelic variation and (c) functional consequence of the mutation at protein level. The molecular divergence, evolved from the ancestral strain (S) lead to extremely lethal (E), lethal(L) and non lethal (N) strains with the involvement of an Intermediate strain(I).
    Keywords covid19
    Publisher BioRxiv; WHO
    Document type Article ; Online
    DOI 10.1101/2020.04.06.027854
    Database COVID19

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  4. Article ; Online: Decoding the lethal effect of SARS-CoV-2 (novel coronavirus) strains from global perspective: molecular pathogenesis and evolutionary divergence

    Banerjee, Shuvam / Dhar, Shrinjana / Bhattacharjee, Sandip / Bhattacharjee, Pritha

    bioRxiv

    Abstract: Background: COVID-19 is a disease with global public health emergency that have shook the world since its first detection in China in December, 2019. Severe acute respiratory syndrome Coronavirus 2 (SARS-CoV-2) is the pathogen responsible behind this ... ...

    Abstract Background: COVID-19 is a disease with global public health emergency that have shook the world since its first detection in China in December, 2019. Severe acute respiratory syndrome Coronavirus 2 (SARS-CoV-2) is the pathogen responsible behind this pandemic. The lethality of different viral strains is found to vary in different geographical locations but the molecular mechanism is yet to be known. Methods: Available data of whole genome sequencing of different viral strains published by different countries were retrieved and then analysed using Multiple Sequence Alignment and Pair-wise Sequence Alignment leading to Phylogenetic tree construction. Each location and the corresponding genetic variations were screened in depth. Then the variations are analysed at protein level giving special emphasis on Non Synonymous amino acid substitutions. The fatality rates in different countries were matched against the mutation number, rarity of the nucleotide alterations and functional impact of the Non Synonymous changes at protein level, separately and in combination. Results: All the viral strains have been found to evolve from the viral strain of Taiwan (MT192759) which is 100% identical with the ancestor SARS-CoV-2 sequences of Wuhan (NC 045512.2; submitted on 5th Jan, 2020). Transition from C to T (C>T) is the most frequent mutation in this viral genome and mutations A>T, G>A, T>A are the rarest ones, found in countries with maximum fatality rate i.e Italy, Spain and Sweden. 20 Non Synonymous mutations are located in viral genome spanning Orf1ab polyprotein, Surface glycoprotein, Nucleocapsid protein etc. The functional effect on the structure and function of the protein can favourably or unfavourably interact with the host body. Interpretation: The fatality outcome depends on three important factors (a) number of mutation (b) rarity of the allelic variation and (c) functional consequence of the mutation at protein level. The molecular divergence, evolved from the ancestral strain (S) lead to extremely lethal (E), lethal (L) and non lethal (N) strains with the involvement of an Intermediate strain (I).
    Keywords covid19
    Language English
    Publishing date 2020-04-09
    Publisher Cold Spring Harbor Laboratory
    Document type Article ; Online
    DOI 10.1101/2020.04.06.027854
    Database COVID19

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  5. Article ; Online: Mutational spectra of SARS‐CoV‐2 orf1ab polyprotein and signature mutations in the United States of America

    Banerjee, Shuvam / Seal, Sohan / Dey, Riju / Mondal, Kousik Kr. / Bhattacharjee, Pritha

    Journal of Medical Virology ; ISSN 0146-6615 1096-9071

    2020  

    Keywords Virology ; Infectious Diseases ; covid19
    Language English
    Publisher Wiley
    Publishing country us
    Document type Article ; Online
    DOI 10.1002/jmv.26417
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  6. Article ; Online: Mutational spectra of SARS-CoV-2 orf1ab polyprotein and signature mutations in the United States of America.

    Banerjee, Shuvam / Seal, Sohan / Dey, Riju / Mondal, Kousik Kr / Bhattacharjee, Pritha

    Journal of medical virology

    2020  Volume 93, Issue 3, Page(s) 1428–1435

    Abstract: The pandemic COVID-19 outbreak has been caused due to SARS-CoV-2 pathogen, resulting in millions of infections and deaths worldwide, the United States being on top at the present moment. The long, complex orf1ab polyproteins of SARS-CoV-2 play an ... ...

    Abstract The pandemic COVID-19 outbreak has been caused due to SARS-CoV-2 pathogen, resulting in millions of infections and deaths worldwide, the United States being on top at the present moment. The long, complex orf1ab polyproteins of SARS-CoV-2 play an important role in viral RNA synthesis. To assess the impact of mutations in this important domain, we analyzed 1134 complete protein sequences of the orf1ab polyprotein from the NCBI virus database from affected patients across various states of the United States from December 2019 to 25 April 2020. Multiple sequence alignment using Clustal Omega followed by statistical significance was calculated. Four significant mutations T265I (nsp 2), P4715L (nsp 12), and P5828L and Y5865C (both at nsp 13) were identified in important nonstructural proteins, which function either as replicase or helicase. A comparative analysis shows 265 T→I, 5828 P→L, and 5865Y→C are unique to the United States and not reported from Europe or Asia; while one, 4715 P→L is predominant in both Europe and the United States. Mutational changes in amino acids are predicted to alter the structure and function of the corresponding proteins, thereby, it is imperative to consider the mutational spectra while designing new antiviral therapeutics targeting viral orf1ab.
    MeSH term(s) Amino Acid Substitution ; COVID-19/virology ; Coronavirus RNA-Dependent RNA Polymerase/chemistry ; Coronavirus RNA-Dependent RNA Polymerase/genetics ; Humans ; Mutation ; Polyproteins/chemistry ; Polyproteins/genetics ; Protein Conformation ; SARS-CoV-2/genetics ; United States ; Viral Nonstructural Proteins/chemistry ; Viral Nonstructural Proteins/genetics ; Viral Proteins/chemistry ; Viral Proteins/genetics
    Chemical Substances ORF1ab polyprotein, SARS-CoV-2 ; Polyproteins ; Viral Nonstructural Proteins ; Viral Proteins ; nsp2 protein, SARS-CoV-2 ; Coronavirus RNA-Dependent RNA Polymerase (EC 2.7.7.48) ; NSP12 protein, SARS-CoV-2 (EC 2.7.7.48)
    Keywords covid19
    Language English
    Publishing date 2020-08-25
    Publishing country United States
    Document type Journal Article
    ZDB-ID 752392-0
    ISSN 1096-9071 ; 0146-6615
    ISSN (online) 1096-9071
    ISSN 0146-6615
    DOI 10.1002/jmv.26417
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: The heteropolysaccharide of Mangifera indica fruit: Isolation, chemical profile, complexation with β-lactoglobulin and antioxidant activity.

    Banerjee, Pallabi / Jana, Subrata / Mukherjee, Shuvam / Bera, Kaushik / Majee, Sujay Kumar / Ali, Imran / Pal, Saikat / Ray, Bimalendu / Ray, Sayani

    International journal of biological macromolecules

    2020  Volume 165, Issue Pt A, Page(s) 93–99

    Abstract: A 91 kDa heteropolysaccharide (F2) was isolated from Mangifera indica fruit via extraction with ... ...

    Abstract A 91 kDa heteropolysaccharide (F2) was isolated from Mangifera indica fruit via extraction with H
    MeSH term(s) Antioxidants/chemistry ; Antioxidants/isolation & purification ; Carbohydrate Sequence/genetics ; Dietary Carbohydrates/isolation & purification ; Fruit/chemistry ; Fruit/genetics ; Humans ; Lactoglobulins/chemistry ; Lactoglobulins/genetics ; Mangifera/chemistry ; Mangifera/genetics ; Monosaccharides/chemistry ; Monosaccharides/genetics ; Monosaccharides/isolation & purification ; Oligosaccharides/chemistry ; Oligosaccharides/genetics ; Oligosaccharides/isolation & purification ; Pectins/chemistry ; Pectins/genetics ; Polysaccharides/chemistry ; Polysaccharides/genetics ; Polysaccharides/isolation & purification
    Chemical Substances Antioxidants ; Dietary Carbohydrates ; Lactoglobulins ; Monosaccharides ; Oligosaccharides ; Polysaccharides ; Pectins (89NA02M4RX)
    Language English
    Publishing date 2020-09-25
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 282732-3
    ISSN 1879-0003 ; 0141-8130
    ISSN (online) 1879-0003
    ISSN 0141-8130
    DOI 10.1016/j.ijbiomac.2020.09.161
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article: The impact of human waste hair reprocessing occupation on environmental degradation—A case study from rural West Bengal, India

    Mondal, Kousik Kr / Banerjee, Shuvam / Dhar, Shrinjana / Sudarshan, M / Bhattacharjee, Pritha

    Environmental geochemistry and health. 2020 Oct., v. 42, no. 10

    2020  

    Abstract: Human hair is considered as a potential biowaste worldwide, and improper disposal of hair can create multiple environmental problems. Due to unique characteristic features, human waste hair can be efficiently utilized for versatile applications, from ... ...

    Abstract Human hair is considered as a potential biowaste worldwide, and improper disposal of hair can create multiple environmental problems. Due to unique characteristic features, human waste hair can be efficiently utilized for versatile applications, from agricultural industries to fashion industries. There is a huge business of human hair in many multinational countries and also in some rural areas of India. The continuous demand of such keratinous waste for human need in turn is producing residual waste at an alarming rate that causes environmental degradation. Therefore, our study aims to investigate the possible impacts of waste hair reprocessing activity on environmental health in rural India, citing examples from Radhapur village. Physico-chemical parameters of pond water and soil from the dumpsite were assessed. Along with this, elemental profile of waste hair, pond water and soil was estimated. To assess the deterioration of water quality, zooplankton diversity was also measured. Water quality index showed that the studied ponds are unsuitable for drinking purpose and aquaculture. The Shannon index further indicated comparatively lower diversity of zooplankton community in the studied ponds. Due to the presence of total organic carbon and available N–P–K, the soil can sustain the growth and survival of plants; however, the risk of toxic metal accumulation may be persisted. Hence, to enhance the utilization of waste hair in a large scale, a policy framework is extremely required that will incorporate environmental and social well-being and provide necessary support towards sustainable development. Future study needs to be carried out to eliminate the toxic elements from the water and soil using some phytoremediation strategies.
    Keywords aquaculture ; case studies ; environmental degradation ; environmental health ; excreta ; geochemistry ; hairs ; humans ; issues and policy ; occupations ; phytoremediation ; risk ; soil ; sustainable development ; total organic carbon ; toxicity ; villages ; waste disposal sites ; wastes ; water quality ; zooplankton ; India
    Language English
    Dates of publication 2020-10
    Size p. 3157-3170.
    Publishing place Springer Netherlands
    Document type Article
    Note NAL-AP-2-clean
    ZDB-ID 52039-1
    ISSN 1573-2983 ; 0142-7245 ; 0269-4042
    ISSN (online) 1573-2983
    ISSN 0142-7245 ; 0269-4042
    DOI 10.1007/s10653-020-00551-0
    Database NAL-Catalogue (AGRICOLA)

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  9. Article: Polysaccharides from Thymus vulgaris leaf: Structural features, antioxidant activity and interaction with bovine serum albumin

    Banerjee, Pallabi / Shuvam Mukherjee / Kaushik Bera / Kanika Ghosh / Imran Ali / Sadhana Khawas / Bimalendu Ray / Sayani Ray

    International journal of biological macromolecules. 2019 Mar. 15, v. 125

    2019  

    Abstract: Thymus vulgaris is used for various health benefits and culinary, nevertheless, report on its macromolecules is absent. Here, we report chemical compositions of the polysaccharides isolated from its leaf by sequential extraction with inorganic solvents. ... ...

    Abstract Thymus vulgaris is used for various health benefits and culinary, nevertheless, report on its macromolecules is absent. Here, we report chemical compositions of the polysaccharides isolated from its leaf by sequential extraction with inorganic solvents. In particular, chemical profile of a unique rhamnogalacturonan I type polysaccharide containing ester linked phenolic acids has been described. Sugar compositional, TLC, UV-spectrometric and ESI-MS analyses of oligosaccharides generated from this polysaccharide by enzyme digestion, controlled acid hydrolysis and Smith degradation revealed atypical fine structural details. Biochemical analysis demonstrated dose-dependent antioxidant activity. A combination of large neutral side chains of the ramified region and ester linked phenolic acids are regarded as the functional sites. Ultraviolet spectrometric and fluorimetric analyses showed that this polysaccharide forms a homogeneous water-soluble complex with bovine serum albumin (binding constant, K = 2.91 × 106/M). Consequently, water extraction affords a polysaccharide which induces pharmacological effect; this underlines the impact of thyme as natural dietetic antioxidant.
    Keywords Thymus vulgaris ; acid hydrolysis ; antioxidant activity ; antioxidants ; bovine serum albumin ; chemical composition ; dose response ; electrospray ionization mass spectrometry ; enzymatic hydrolysis ; leaves ; oligosaccharides ; phenolic acids ; polysaccharides ; solvents ; thyme ; water solubility
    Language English
    Dates of publication 2019-0315
    Size p. 580-587.
    Publishing place Elsevier B.V.
    Document type Article
    ZDB-ID 282732-3
    ISSN 1879-0003 ; 0141-8130
    ISSN (online) 1879-0003
    ISSN 0141-8130
    DOI 10.1016/j.ijbiomac.2018.11.117
    Database NAL-Catalogue (AGRICOLA)

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  10. Article ; Online: Mutational spectra of SARS-CoV-2 orf1ab polyprotein and Signature mutations in the United States of America

    Banerjee, Shuvam / Seal, Sohan / Dey, Riju / Mondal, Kousik Kr. / Bhattacharjee, Pritha

    bioRxiv

    Abstract: Pandemic COVID-19 outbreak has been caused due to SARS-COV2 pathogen, resulting millions of infection and death worldwide, USA being on top at the present moment. The long, complex orf1ab polyproteins of SARS-COV2 play an important role in viral RNA ... ...

    Abstract Pandemic COVID-19 outbreak has been caused due to SARS-COV2 pathogen, resulting millions of infection and death worldwide, USA being on top at the present moment. The long, complex orf1ab polyproteins of SARS-COV2 play an important role in viral RNA synthesis. To assess the impact of mutations in this important domain, we analyzed 1134 complete protein sequences of orf1ab polyprotein from NCBI Virus database from affected patients across various states of USA from December 2019 to 25th April, 2020. Multiple sequence alignment using Clustal Omega followed by statistical significance was calculated. Four significant mutations T265I (nsp 2), P4715L (nsp 12) and P5828L and Y5865C (both at nsp 13) were identified in important non-structural proteins, which function either as replicase or helicase. A comparative analysis shows 265T>I, 5828P>L and 5865Y>C are unique to USA and not reported from Europe or Asia; while one, 4715P>L is predominant in both Europe and USA. Mutational changes in amino acids are predicted to alter structure and function of corresponding proteins, thereby it is imperative to consider the mutational spectra while designing new antiviral therapeutics targeting viral orf1ab.
    Keywords covid19
    Publisher BioRxiv; WHO
    Document type Article ; Online
    DOI 10.1101/2020.05.01.071654
    Database COVID19

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