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Article ; Online: Vegan leather: a sustainable reality or a marketing gimmick?

Tewari, Srishti / Reshamwala, Shamlan M S / Bhatt, Latika / Kale, Ravindra D

Environmental science and pollution research international

2023 Volume 31, Issue 3, Page(s) 3361–3375

Abstract: The textile industry is the only one which has utilised all kinds of resources available in nature, and the evolution of textile materials has drastically hampered nature as well. Leather and fur are a few of the classic examples of materials derived ... ...

Abstract	The textile industry is the only one which has utilised all kinds of resources available in nature, and the evolution of textile materials has drastically hampered nature as well. Leather and fur are a few of the classic examples of materials derived from animals that have attracted dialogues about animal rights and ethical sourcing. To substitute animal-based leather, numerous materials have been manufactured synthetically and semi-synthetically. This review article discusses various types of leather, viz., bovine leather, poromerics, leatherette, plant-based vegan leather, and the sustainable alternatives available in the market as well as at the inductive research phase. The article is a comprehensive review of the leather and its commercially available alternatives along with their marketing strategy, and technical details. The article also compiles insight into the processing, and the components of vegan leather and the environmental issues related to them. The sustainability and circularity of processing in manufacturing vegan leather have also been discussed, with biodegradability as the focal point.
MeSH term(s)	Animals ; Cattle ; Humans ; Industrial Waste/analysis ; Vegans ; Commerce ; Marketing ; Textile Industry
Chemical Substances	Industrial Waste
Language	English
Publishing date	2023-12-18
Publishing country	Germany
Document type	Journal Article ; Review
ZDB-ID	1178791-0
ISSN	1614-7499 ; 0944-1344
ISSN (online)	1614-7499
ISSN	0944-1344
DOI	10.1007/s11356-023-31491-8
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Article ; Online: Exploiting the NADPH pool for xylitol production using recombinant Saccharomyces cerevisiae.

Reshamwala, Shamlan M S / Lali, Arvind M

Biotechnology progress

2020 Volume 36, Issue 3, Page(s) e2972

Abstract: ... when NADPH-dependent enzymes (Candida tropicalis XR and S. cerevisiae Gre3p aldose reductase) were expressed ...

Abstract	Xylitol is a five-carbon sugar alcohol that has a variety of uses in the food and pharmaceutical industries. In xylose assimilating yeasts, NAD(P)H-dependent xylose reductase (XR) catalyzes the reduction of xylose to xylitol. In the present study, XR with varying cofactor specificities was overexpressed in Saccharomyces cerevisiae to screen for efficient xylitol production. Xylose consumption and xylitol yields were higher when NADPH-dependent enzymes (Candida tropicalis XR and S. cerevisiae Gre3p aldose reductase) were expressed, indicating that heterologous enzymes can utilize the intracellular NADPH pool more efficiently than the NADH pool, where they may face competition from native enzymes. This was confirmed by overexpression of a NADH-preferring C. tropicalis XR mutant, which led to decreased xylose consumption and lower xylitol yield. To increase intracellular NADPH availability for xylitol production, the promoter of the ZWF1 gene, coding for the first enzyme of the NADPH-generating pentose phosphate pathway, was replaced with the constitutive GPD promoter in a strain expressing C. tropicalis XR. This change led to a ~12% increase in xylitol yield. Deletion of XYL2 and SOR1, whose gene products can use xylitol as substrate, did not further increase xylitol yield. Using wheat stalk hydrolysate as source of xylose, the constructed strain efficiently produced xylitol, demonstrating practical relevance of this approach.
MeSH term(s)	Aldehyde Reductase/genetics ; Candida tropicalis/enzymology ; Ethanol/chemistry ; Fermentation ; Gene Expression Regulation, Fungal/genetics ; Metabolic Engineering ; NAD/chemistry ; NADP/genetics ; Saccharomyces cerevisiae/enzymology ; Xylitol/biosynthesis ; Xylitol/genetics ; Xylose/biosynthesis ; Xylose/genetics
Chemical Substances	NAD (0U46U6E8UK) ; Ethanol (3K9958V90M) ; NADP (53-59-8) ; Xylose (A1TA934AKO) ; Aldehyde Reductase (EC 1.1.1.21) ; Xylitol (VCQ006KQ1E)
Language	English
Publishing date	2020-02-03
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	165657-0
ISSN	1520-6033 ; 8756-7938
ISSN (online)	1520-6033
ISSN	8756-7938
DOI	10.1002/btpr.2972
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Article ; Online: Activation of alternative metabolic pathways diverts carbon flux away from isobutanol formation in an engineered Escherichia coli strain.

Deb, Shalini S / Reshamwala, Shamlan M S / Lali, Arvind M

Biotechnology letters

2019 Volume 41, Issue 6-7, Page(s) 823–836

Abstract: Objective: Metabolic engineering efforts are guided by identifying gene targets for overexpression and/or deletion. Isobutanol, a biofuel candidate, is biosynthesized using the valine biosynthesis pathway and enzymes of the Ehrlich pathway. Most ... ...

Abstract	Objective: Metabolic engineering efforts are guided by identifying gene targets for overexpression and/or deletion. Isobutanol, a biofuel candidate, is biosynthesized using the valine biosynthesis pathway and enzymes of the Ehrlich pathway. Most reported studies for isobutanol production in Escherichia coli employ multicopy plasmids, an approach that suffers from disadvantages such as plasmid instability, increased metabolic burden, and use of antibiotics to maintain selection pressure. Cofactor imbalance is another issue that may limit production of isobutanol, as two enzymes of the pathway utilize NADPH as a cofactor. Results: To address these issues, we constructed E. coli strains with chromosomally-integrated, codon-optimized isobutanol pathway genes (ilvGM, ilvC, kivd, adh) selected on the basis of their cofactor preferences. Genes involved in diverting pyruvate flux toward fermentation byproducts were deleted. Metabolite analyses of the constructed strains revealed extracellular accumulation of significant amounts of isobutyraldehyde, a pathway intermediate, and the overflow metabolites 2,3-butanediol and acetol. Conclusions: These results demonstrate that the genetic modifications carried out led to activation of alternative pathways that diverted carbon flux toward formation of unwanted metabolites. The present study highlights how precursor metabolites can be metabolized through enzymatic routes that have not been considered important in previous studies due to the different strategies employed therein. The insights gained from the present study will allow rational genetic modification of host cells for production of metabolites of interest.
MeSH term(s)	Butanols/metabolism ; Carbon Cycle ; Escherichia coli/genetics ; Escherichia coli/metabolism ; Metabolic Engineering/methods ; Metabolic Networks and Pathways/genetics
Chemical Substances	Butanols ; isobutyl alcohol (56F9Z98TEM)
Language	English
Publishing date	2019-05-15
Publishing country	Netherlands
Document type	Journal Article
ZDB-ID	423853-9
ISSN	1573-6776 ; 0141-5492
ISSN (online)	1573-6776
ISSN	0141-5492
DOI	10.1007/s10529-019-02683-5
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Article ; Online: Mutations in SARS-CoV-2 nsp7 and nsp8 proteins and their predicted impact on replication/transcription complex structure.

Reshamwala, Shamlan M S / Likhite, Vishakha / Degani, Mariam S / Deb, Shalini S / Noronha, Santosh B

Journal of medical virology

2021 Volume 93, Issue 7, Page(s) 4616–4619

Abstract: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) RNA-dependent RNA polymerase (RdRp) has been identified to be a mutation hot spot, with the P323L mutation being commonly observed in viral genomes isolated from North America. RdRp forms a ... ...

Abstract	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) RNA-dependent RNA polymerase (RdRp) has been identified to be a mutation hot spot, with the P323L mutation being commonly observed in viral genomes isolated from North America. RdRp forms a complex with nonstructural proteins nsp7 and nsp8 to form the minimal replication/transcription machinery required for genome replication. As mutations in RdRp may affect formation of the RdRp-nsp7-nsp8 supercomplex, we analyzed viral genomes to identify mutations in nsp7 and nsp8 protein sequences. Based on in silico analysis of predicted structures of the supercomplex comprising of native and mutated proteins, we demonstrate that specific mutations in nsp7 and nsp8 proteins may have a role in stabilization of the replication/transcription complex.
MeSH term(s)	Amino Acid Sequence ; Computer Simulation ; Coronavirus RNA-Dependent RNA Polymerase/chemistry ; Coronavirus RNA-Dependent RNA Polymerase/genetics ; Coronavirus RNA-Dependent RNA Polymerase/metabolism ; Genome, Viral ; Humans ; Models, Molecular ; Mutation ; Protein Stability ; SARS-CoV-2/chemistry ; SARS-CoV-2/genetics ; SARS-CoV-2/physiology ; Viral Nonstructural Proteins/chemistry ; Viral Nonstructural Proteins/genetics ; Viral Nonstructural Proteins/metabolism ; Viral Replication Compartments/chemistry ; Viral Replication Compartments/metabolism
Chemical Substances	NS8 protein, SARS-CoV-2 ; Viral Nonstructural Proteins ; Coronavirus RNA-Dependent RNA Polymerase (EC 2.7.7.48) ; NSP12 protein, SARS-CoV-2 (EC 2.7.7.48) ; NSP7 protein, SARS-CoV-2 (EC 2.7.7.48)
Language	English
Publishing date	2021-03-14
Publishing country	United States
Document type	Journal Article
ZDB-ID	752392-0
ISSN	1096-9071 ; 0146-6615
ISSN (online)	1096-9071
ISSN	0146-6615
DOI	10.1002/jmv.26791
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Article ; Online: Rewiring of metabolic pathways in yeasts for sustainable production of biofuels.

Maurya, Rupesh / Gohil, Nisarg / Nixon, Snovia / Kumar, Nilesh / Noronha, Santosh B / Dhali, Debarun / Trabelsi, Heykel / Alzahrani, Khalid J / Reshamwala, Shamlan M S / Awasthi, Mukesh Kumar / Ramakrishna, Suresh / Singh, Vijai

Bioresource technology

2023 Volume 372, Page(s) 128668

Abstract: The ever-increasing global energy demand has led world towards negative repercussions such as depletion of fossil fuels, pollution, global warming and climate change. Designing microbial cell factories for the sustainable production of biofuels is ... ...

Abstract	The ever-increasing global energy demand has led world towards negative repercussions such as depletion of fossil fuels, pollution, global warming and climate change. Designing microbial cell factories for the sustainable production of biofuels is therefore an active area of research. Different yeast cells have been successfully engineered using synthetic biology and metabolic engineering approaches for the production of various biofuels. In the present article, recent advancements in genetic engineering strategies for production of bioalcohols, isoprenoid-based biofuels and biodiesels in different yeast chassis designs are reviewed, along with challenges that must be overcome for efficient and high titre production of biofuels.
MeSH term(s)	Saccharomyces cerevisiae/metabolism ; Biofuels ; Metabolic Engineering ; Metabolic Networks and Pathways ; Terpenes/metabolism
Chemical Substances	Biofuels ; Terpenes
Language	English
Publishing date	2023-01-21
Publishing country	England
Document type	Journal Article ; Review
ZDB-ID	1065195-0
ISSN	1873-2976 ; 0960-8524
ISSN (online)	1873-2976
ISSN	0960-8524
DOI	10.1016/j.biortech.2023.128668
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Article ; Online: A shortened, two-enzyme pathway for 2,3-butanediol production in Escherichia coli.

Reshamwala, Shamlan M S / Deb, Shalini S / Lali, Arvind M

Journal of industrial microbiology & biotechnology

2017 Volume 44, Issue 9, Page(s) 1273–1277

Abstract: The platform chemical 2,3-butanediol (2,3-BDO) is produced by a number of microorganisms via a three-enzyme pathway starting from pyruvate. Here, we report production of 2,3-BDO via a shortened, two-enzyme pathway in Escherichia coli. A synthetic operon ... ...

Abstract	The platform chemical 2,3-butanediol (2,3-BDO) is produced by a number of microorganisms via a three-enzyme pathway starting from pyruvate. Here, we report production of 2,3-BDO via a shortened, two-enzyme pathway in Escherichia coli. A synthetic operon consisting of the acetolactate synthase (ALS) and acetoin reductase (AR) genes from Enterobacter under control of the T7 promoter was cloned in an episomal plasmid. E. coli transformed with this plasmid produced 2,3-BDO and the pathway intermediate acetoin, demonstrating that the shortened pathway was functional. To assemble a synthetic operon for inducer- and plasmid-free production of 2,3-BDO, ALS and AR genes were integrated in the E. coli genome under control of the constitutive ackA promoter. Shake flask-level cultivation led to accumulation of ~1 g/L acetoin and ~0.66 g/L 2,3-BDO in the medium. The novel biosynthetic route for 2,3-BDO biosynthesis described herein provides a simple and cost-effective approach for production of this important chemical.
MeSH term(s)	Acetoin/metabolism ; Acetolactate Synthase/genetics ; Acetolactate Synthase/metabolism ; Alcohol Oxidoreductases/genetics ; Alcohol Oxidoreductases/metabolism ; Bioreactors ; Butylene Glycols/metabolism ; Enterobacter/enzymology ; Enterobacter/genetics ; Escherichia coli/enzymology ; Escherichia coli/genetics ; Escherichia coli/metabolism ; Genetic Engineering ; Operon/genetics ; Plasmids/genetics
Chemical Substances	Butylene Glycols ; 2,3-butylene glycol (45427ZB5IJ) ; Acetoin (BG4D34CO2H) ; Alcohol Oxidoreductases (EC 1.1.-) ; butanediol dehydrogenase (EC 1.1.1.4) ; Acetolactate Synthase (EC 2.2.1.6)
Language	English
Publishing date	2017-05-25
Publishing country	Germany
Document type	Journal Article
ZDB-ID	1482484-x
ISSN	1476-5535 ; 1367-5435
ISSN (online)	1476-5535
ISSN	1367-5435
DOI	10.1007/s10295-017-1957-5
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Article ; Online: Rebooting life: engineering non-natural nucleic acids, proteins and metabolites in microorganisms.

Hans, Shriya / Kumar, Nilesh / Gohil, Nisarg / Khambhati, Khushal / Bhattacharjee, Gargi / Deb, Shalini S / Maurya, Rupesh / Kumar, Vinod / Reshamwala, Shamlan M S / Singh, Vijai

Microbial cell factories

2022 Volume 21, Issue 1, Page(s) 100

Abstract: The surging demand of value-added products has steered the transition of laboratory microbes to microbial cell factories (MCFs) for facilitating production of large quantities of important native and non-native biomolecules. This shift has been possible ... ...

Abstract	The surging demand of value-added products has steered the transition of laboratory microbes to microbial cell factories (MCFs) for facilitating production of large quantities of important native and non-native biomolecules. This shift has been possible through rewiring and optimizing different biosynthetic pathways in microbes by exercising frameworks of metabolic engineering and synthetic biology principles. Advances in genome and metabolic engineering have provided a fillip to create novel biomolecules and produce non-natural molecules with multitude of applications. To this end, numerous MCFs have been developed and employed for production of non-natural nucleic acids, proteins and different metabolites to meet various therapeutic, biotechnological and industrial applications. The present review describes recent advances in production of non-natural amino acids, nucleic acids, biofuel candidates and platform chemicals.
MeSH term(s)	Biosynthetic Pathways/genetics ; Biotechnology ; Metabolic Engineering ; Nucleic Acids ; Synthetic Biology
Chemical Substances	Nucleic Acids
Language	English
Publishing date	2022-05-28
Publishing country	England
Document type	Journal Article ; Review
ZDB-ID	2091377-1
ISSN	1475-2859 ; 1475-2859
ISSN (online)	1475-2859
ISSN	1475-2859
DOI	10.1186/s12934-022-01828-y
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Article ; Online: Rewiring of metabolic pathways in yeasts for sustainable production of biofuels

Maurya, Rupesh / Gohil, Nisarg / Nixon, Snovia / Kumar, Nilesh / Noronha, Santosh B. / Dhali, Debarun / Trabelsi, Heykel / Alzahrani, Khalid J. / Reshamwala, Shamlan M.S. / Awasthi, Mukesh Kumar / Ramakrishna, Suresh / Singh, Vijai

Bioresource Technology. 2023 Mar., v. 372 p.128668-

2023

Abstract	The ever-increasing global energy demand has led world towards negative repercussions such as depletion of fossil fuels, pollution, global warming and climate change. Designing microbial cell factories for the sustainable production of biofuels is therefore an active area of research. Different yeast cells have been successfully engineered using synthetic biology and metabolic engineering approaches for the production of various biofuels. In the present article, recent advancements in genetic engineering strategies for production of bioalcohols, isoprenoid-based biofuels and biodiesels in different yeast chassis designs are reviewed, along with challenges that must be overcome for efficient and high titre production of biofuels.
Keywords	biodiesel ; climate change ; energy ; pollution ; synthetic biology ; technology ; yeasts ; Biofuels ; Microbial cell factories ; Metabolic engineering ; Yeast ; Fatty acids
Language	English
Dates of publication	2023-03
Publishing place	Elsevier Ltd
Document type	Article ; Online
ZDB-ID	1065195-0
ISSN	1873-2976 ; 0960-8524
ISSN (online)	1873-2976
ISSN	0960-8524
DOI	10.1016/j.biortech.2023.128668
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Article ; Online: A series of template plasmids for Escherichia coli genome engineering.

Deb, Shalini S / Reshamwala, Shamlan M S / Lali, Arvind M

Journal of microbiological methods

2016 Volume 125, Page(s) 49–57

Abstract: Metabolic engineering strategies often employ multi-copy episomal vectors to overexpress genes. However, chromosome-based overexpression is preferred as it avoids the use of selective pressure and reduces metabolic burden on the cell. We have constructed ...

Abstract	Metabolic engineering strategies often employ multi-copy episomal vectors to overexpress genes. However, chromosome-based overexpression is preferred as it avoids the use of selective pressure and reduces metabolic burden on the cell. We have constructed a series of template plasmids for λ Red-mediated Escherichia coli genome engineering. The template plasmids allow construction of genome integrating cassettes that can be used to integrate single copies of DNA sequences at predetermined sites or replace promoter regions. The constructed cassettes provide flexibility in terms of expression levels achieved and antibiotics used for selection, as well as allowing construction of marker-free strains. The modular design of the template plasmids allows replacement of genetic parts to construct new templates. Gene integration and promoter replacement using the template plasmids are illustrated.
MeSH term(s)	Chromosomes ; Cloning, Molecular ; Escherichia coli/genetics ; Gene Targeting/methods ; Genetic Engineering/methods ; Genetic Vectors ; Genome, Bacterial ; Luminescent Proteins/genetics ; Plasmids/genetics ; Promoter Regions, Genetic ; Red Fluorescent Protein
Chemical Substances	Luminescent Proteins
Language	English
Publishing date	2016-04-09
Publishing country	Netherlands
Document type	Journal Article
ZDB-ID	604916-3
ISSN	1872-8359 ; 0167-7012
ISSN (online)	1872-8359
ISSN	0167-7012
DOI	10.1016/j.mimet.2016.04.006
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Article: Activation of alternative metabolic pathways diverts carbon flux away from isobutanol formation in an engineered Escherichia coli strain

Deb, Shalini S / Lali, Arvind M / Reshamwala, Shamlan M. S

Biotechnology letters. 2019 July, v. 41, no. 6-7

2019

Abstract: OBJECTIVE: Metabolic engineering efforts are guided by identifying gene targets for overexpression and/or deletion. Isobutanol, a biofuel candidate, is biosynthesized using the valine biosynthesis pathway and enzymes of the Ehrlich pathway. Most reported ...

Abstract	OBJECTIVE: Metabolic engineering efforts are guided by identifying gene targets for overexpression and/or deletion. Isobutanol, a biofuel candidate, is biosynthesized using the valine biosynthesis pathway and enzymes of the Ehrlich pathway. Most reported studies for isobutanol production in Escherichia coli employ multicopy plasmids, an approach that suffers from disadvantages such as plasmid instability, increased metabolic burden, and use of antibiotics to maintain selection pressure. Cofactor imbalance is another issue that may limit production of isobutanol, as two enzymes of the pathway utilize NADPH as a cofactor. RESULTS: To address these issues, we constructed E. coli strains with chromosomally-integrated, codon-optimized isobutanol pathway genes (ilvGM, ilvC, kivd, adh) selected on the basis of their cofactor preferences. Genes involved in diverting pyruvate flux toward fermentation byproducts were deleted. Metabolite analyses of the constructed strains revealed extracellular accumulation of significant amounts of isobutyraldehyde, a pathway intermediate, and the overflow metabolites 2,3-butanediol and acetol. CONCLUSIONS: These results demonstrate that the genetic modifications carried out led to activation of alternative pathways that diverted carbon flux toward formation of unwanted metabolites. The present study highlights how precursor metabolites can be metabolized through enzymatic routes that have not been considered important in previous studies due to the different strategies employed therein. The insights gained from the present study will allow rational genetic modification of host cells for production of metabolites of interest.
Keywords	antibiotics ; biochemical pathways ; biofuels ; biosynthesis ; byproducts ; carbon ; enzymes ; Escherichia coli ; fermentation ; gene overexpression ; genes ; genetic engineering ; metabolic engineering ; metabolites ; NADP (coenzyme) ; plasmids ; pyruvic acid ; selection pressure ; valine
Language	English
Dates of publication	2019-07
Size	p. 823-836.
Publishing place	Springer Netherlands
Document type	Article
ZDB-ID	423853-9
ISSN	1573-6776 ; 0141-5492
ISSN (online)	1573-6776
ISSN	0141-5492
DOI	10.1007/s10529-019-02683-5
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