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  1. Article: COX-2/PGE2: molecular ambassadors of Kaposi's sarcoma-associated herpes virus oncoprotein-v-FLIP.

    Sharma-Walia, N / Patel, K / Chandran, K / Marginean, A / Bottero, V / Kerur, N / Paul, A G

    Oncogenesis

    2012  Volume 1, Page(s) e5

    Abstract: ... enzyme)-like inhibitory protein (v-FLIP) or K13, a potent activator of NF-κB, has well-established roles ... to promote latency and inflammation/angiogenesis/invasion. Here, we demonstrate that v-FLIP/K13 promotes ... factors for its transcriptional regulation, it is the v-FLIP/K13 gene in the KSHV latency cluster that maintains continuous COX-2 ...

    Abstract Kaposi's sarcoma herpesvirus (KSHV) latent oncoprotein viral FLICE (FADD-like interferon converting enzyme)-like inhibitory protein (v-FLIP) or K13, a potent activator of NF-κB, has well-established roles in KSHV latency and oncogenesis. KSHV-induced COX-2 represents a novel strategy employed by KSHV to promote latency and inflammation/angiogenesis/invasion. Here, we demonstrate that v-FLIP/K13 promotes tumorigenic effects via the induction of host protein COX-2 and its inflammatory metabolite PGE2 in an NF-κB-dependent manner. In addition to our previous studies demonstrating COX-2/PGE2's role in transcriptional regulation of KSHV latency promoter and latent gene expression, the current study adds to the complexity that though LANA-1 (latency associated nuclear antigen) is utilizing COX-2/PGE2 as critical factors for its transcriptional regulation, it is the v-FLIP/K13 gene in the KSHV latency cluster that maintains continuous COX-2/PGE2 levels in the infected cells. We demonstrate that COX-2 inhibition, via its chemical inhibitors (NS-398 or celecoxib), reduced v-FLIP/K13-mediated NF-κB induction, and extracellular matrix (ECM) interaction-mediated signaling, mitochondrial antioxidant enzyme manganese superoxide dismutase (MnSOD) levels, and subsequently downregulated detachment-induced apoptosis (anoikis) resistance. vFLIP expression mediated the secretion of cytokines, and spindle cell differentiation activated the phosphorylation of p38, RSK, FAK, Src, Akt and Rac1-GTPase. The COX-2 inhibition in v-FLIP/K13-HMVECs reduced inflammation and invasion/metastasis-related genes, along with reduced anchorage-independent colony formation via modulating 'extrinsic' as well as 'intrinsic' cell death pathways. COX-2 blockade in v-FLIP/K13-HMVEC cells drastically augmented cell death induced by removal of essential growth/survival factors secreted in the microenvironment. Transformed cells obtained from anchorage-independent colonies of COX-2 inhibitor-treated v-FLIP/K13-HMVEC cells expressed lower levels of endothelial-mesenchymal transition genes such as slug, snail and twist, and higher expression of the tumor-suppressor gene, E-cadherin. Taken together, our study provides strong evidences that FDA-approved COX-2 inhibitors have great potential in blocking tumorigenic events linked to KSHV's oncogenic protein v-FLIP/K13.
    Language English
    Publishing date 2012-04-02
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2674437-5
    ISSN 2157-9024
    ISSN 2157-9024
    DOI 10.1038/oncsis.2012.5
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: A Comparison of Gene Expression Changes in the Blood of Individuals Consuming Diets Supplemented with Olives, Nuts or Long-Chain Omega-3 Fatty Acids.

    Bottero, Virginie / Potashkin, Judith A

    Nutrients

    2020  Volume 12, Issue 12

    Abstract: Background: The Mediterranean diet, which is rich in olive oil, nuts, and fish, is considered healthy and may reduce the risk of chronic diseases.: Methods: Here, we compared the transcriptome from the blood of subjects with diets supplemented with ... ...

    Abstract Background: The Mediterranean diet, which is rich in olive oil, nuts, and fish, is considered healthy and may reduce the risk of chronic diseases.
    Methods: Here, we compared the transcriptome from the blood of subjects with diets supplemented with olives, nuts, or long-chain omega-3 fatty acids and identified the genes differentially expressed. The dietary genes obtained were subjected to network analysis to determine the main pathways, as well as the transcription factors and microRNA interaction network to elucidate their regulation. Finally, a gene-associated disease interaction network was performed.
    Results: We identified several genes whose expression is altered after the intake of components of the Mediterranean diets compared to controls. These genes were associated with infection and inflammation. Transcription factors and miRNAs were identified as potential regulators of the dietary genes. Interestingly, caspase 1 and sialophorin are differentially expressed in the opposite direction after the intake of supplements compared to Alzheimer's disease patients. In addition, ten transcription factors were identified that regulated gene expression in supplemented diets, mild cognitive impairment, and Alzheimer's disease.
    Conclusions: We determine genes whose expression is altered after the intake of the supplements as well as the transcription factors and miRNA involved in their regulation. These genes are associated with schizophrenia, neoplasms, and rheumatic arthritis, suggesting that the Mediterranean diet may be beneficial in reducing these diseases. In addition, the results suggest that the Mediterranean diet may also be beneficial in reducing the risk of dementia.
    MeSH term(s) Alzheimer Disease ; Cognitive Dysfunction ; Diet, Mediterranean ; Dietary Supplements ; Fatty Acids, Omega-3/blood ; Fatty Acids, Omega-3/pharmacology ; Fish Oils ; Gene Expression Regulation/drug effects ; MicroRNAs/genetics ; Nuts ; Olea ; Olive Oil ; Transcription Factors ; Transcriptome
    Chemical Substances Fatty Acids, Omega-3 ; Fish Oils ; MicroRNAs ; Olive Oil ; Transcription Factors
    Language English
    Publishing date 2020-12-08
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2518386-2
    ISSN 2072-6643 ; 2072-6643
    ISSN (online) 2072-6643
    ISSN 2072-6643
    DOI 10.3390/nu12123765
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Temperate coppice forests in north-western Italy are resilient to wild ungulate browsing in the short to medium term

    Bottero, Alessandra / Meloni, Fabio / Garbarino, Matteo / Motta, Renzo

    Forest ecology and management. 2022 Nov. 01, v. 523

    2022  

    Abstract: In southern European temperate forests, coppicing is a traditional form of forest management that shaped the present cultural landscape, providing multiple ecosystem services. Roe deer densities have been growing notably during the last decades mainly ... ...

    Abstract In southern European temperate forests, coppicing is a traditional form of forest management that shaped the present cultural landscape, providing multiple ecosystem services. Roe deer densities have been growing notably during the last decades mainly due to the abandonment of rural areas, changes in human land use and restocking. The impact of roe deer on coppice forests can affect the resprouting and, in turn, compromise the products and ecosystem services provided by these forests. During coppicing, stems are cut down close to the ground, where the growing shoots are exposed to deer browsing, especially during the early years following cutting. In this study, using a browsing exclusion experiment, we investigated the impact of browsing on temperate mountain hardwood coppice forests in the western Italian Alps over a period of eleven years following coppicing. We found that the impact of browsing was highest in the first two years following coppicing, with Quercus pubescens and Castanea sativa being the most affected tree species. The height of shoots was the variable that showed the biggest difference between fenced and unfenced areas. A significant negative effect of browsing on shoot height was found at the beginning of the experiment, with shoots growing in unfenced area showing the lowest height increments. After the third year, when the browsing intensity diminished, we observed the opposite trend, with shoots growing in unfenced areas showing higher height increments compared with fenced areas. A similar trend was observed also for the diameter of shoots over the course of the experiment. Eleven years after coppicing, however, the structural characteristics of the natural regeneration converged at all sites and in both fenced and unfenced areas. This study shows that coppice forests are resilient to browsing and are capable to recover growth loss within a few years after browsing has naturally diminished and stopped. The research conducted also points out the importance of medium- to long-term monitoring to assess post-disturbance dynamics and evaluate implications for management.
    Keywords Capreolus capreolus ; Castanea sativa ; Quercus pubescens ; administrative management ; coppicing ; cultural landscape ; deer ; ecosystems ; forest ecology ; forest management ; hardwood ; humans ; land use ; natural regeneration ; trees ; Italy
    Language English
    Dates of publication 2022-1101
    Publishing place Elsevier B.V.
    Document type Article
    ZDB-ID 751138-3
    ISSN 0378-1127
    ISSN 0378-1127
    DOI 10.1016/j.foreco.2022.120484
    Database NAL-Catalogue (AGRICOLA)

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  4. Article: Key Disease Mechanisms Linked to Amyotrophic Lateral Sclerosis in Spinal Cord Motor Neurons.

    Bottero, Virginie / Santiago, Jose A / Quinn, James P / Potashkin, Judith A

    Frontiers in molecular neuroscience

    2022  Volume 15, Page(s) 825031

    Abstract: Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease with no modifying treatments available. The molecular mechanisms underpinning disease pathogenesis are not fully understood. Recent studies have employed co-expression networks to ... ...

    Abstract Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease with no modifying treatments available. The molecular mechanisms underpinning disease pathogenesis are not fully understood. Recent studies have employed co-expression networks to identify key genes, known as "switch genes", responsible for dramatic transcriptional changes in the blood of ALS patients. In this study, we directly investigate the root cause of ALS by examining the changes in gene expression in motor neurons that degenerate in patients. Co-expression networks identified in ALS patients' spinal cord motor neurons revealed 610 switch genes in seven independent microarrays. Switch genes were enriched in several pathways, including viral carcinogenesis, PI3K-Akt, focal adhesion, proteoglycans in cancer, colorectal cancer, and thyroid hormone signaling. Transcription factors ELK1 and GATA2 were identified as key master regulators of the switch genes. Protein-chemical network analysis identified valproic acid, cyclosporine, estradiol, acetaminophen, quercetin, and carbamazepine as potential therapeutics for ALS. Furthermore, the chemical analysis identified metals and organic compounds including, arsenic, copper, nickel, and benzo(a)pyrene as possible mediators of neurodegeneration. The identification of switch genes provides insights into previously unknown biological pathways associated with ALS.
    Language English
    Publishing date 2022-03-15
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2452967-9
    ISSN 1662-5099
    ISSN 1662-5099
    DOI 10.3389/fnmol.2022.825031
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Meta-Analysis of Gene Expression Changes in the Blood of Patients with Mild Cognitive Impairment and Alzheimer's Disease Dementia.

    Bottero, Virginie / Potashkin, Judith A

    International journal of molecular sciences

    2019  Volume 20, Issue 21

    Abstract: Background: Dementia is a major public health concern affecting approximately 47 million people worldwide. Mild cognitive impairment (MCI) is one form of dementia that affects an individual's memory with or without affecting their daily life. Alzheimer' ... ...

    Abstract Background: Dementia is a major public health concern affecting approximately 47 million people worldwide. Mild cognitive impairment (MCI) is one form of dementia that affects an individual's memory with or without affecting their daily life. Alzheimer's disease dementia (ADD) is a more severe form of dementia that usually affects elderly individuals. It remains unclear whether MCI is a distinct disorder from or an early stage of ADD.
    Methods: Gene expression data from blood were analyzed to identify potential biomarkers that may be useful for distinguishing between these two forms of dementia.
    Results: A meta-analysis revealed 91 genes dysregulated in individuals with MCI and 387 genes dysregulated in ADD. Pathway analysis identified seven pathways shared between MCI and ADD and nine ADD-specific pathways. Fifteen transcription factors were associated with MCI and ADD, whereas seven transcription factors were specific for ADD. Mir-335-5p was specific for ADD, suggesting that it may be useful as a biomarker. Diseases that are associated with MCI and ADD included developmental delays, cognition impairment, and movement disorders.
    Conclusion: These results provide a better molecular understanding of peripheral changes that occur in MCI and ADD patients and may be useful in the identification of diagnostic and prognostic biomarkers.
    MeSH term(s) Alzheimer Disease/blood ; Alzheimer Disease/genetics ; Biomarkers/blood ; Cognitive Dysfunction/blood ; Cognitive Dysfunction/genetics ; Female ; Gene Expression Profiling/methods ; Gene Expression Regulation ; Gene Regulatory Networks ; Humans ; Male ; MicroRNAs/blood ; MicroRNAs/genetics
    Chemical Substances Biomarkers ; MIRN335 microRNA, human ; MicroRNAs
    Language English
    Publishing date 2019-10-30
    Publishing country Switzerland
    Document type Journal Article ; Meta-Analysis
    ZDB-ID 2019364-6
    ISSN 1422-0067 ; 1422-0067 ; 1661-6596
    ISSN (online) 1422-0067
    ISSN 1422-0067 ; 1661-6596
    DOI 10.3390/ijms20215403
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  6. Article ; Online: Combining Revealed and Stated Preferences to design a new urban park in a metropolitan area of North-Western Italy

    Bottero, Marta / Bravi, Marina / Caprioli, Caterina / Dell'Anna, Federico

    Ecological Modelling. 2023 Sept., v. 483 p.110436-

    2023  

    Abstract: Inclusive and participatory decision-making is a sustainable option for governments and decision-makers to support real transformation and planning of policies and actions. Investigating and gathering the various views and opinions of stakeholders and ... ...

    Abstract Inclusive and participatory decision-making is a sustainable option for governments and decision-makers to support real transformation and planning of policies and actions. Investigating and gathering the various views and opinions of stakeholders and citizens is particularly effective because it opens up a range of possibilities in co-constructing the city of the future. Among urban areas requiring planning, Urban Green Infrastructures (UGIs) represent spaces designed to improve the character of neighborhoods, as well as to increase the well-being of users. To achieve these goals, planners should adopt a design approach in which UGIs projects are shaped by local community concerns rather than by market conventions in urban design. Focusing on green recreational areas, this study employs an integrated approach combining Revealed (RP) and Stated Preferences (SP) to investigate citizens' preferences regarding urban parks. In particular, the experiment combines Travel Cost Method (TCM) and Discrete Choice Experiment (DCE) for supporting a requalification project in an ex-industrial area of Turin (Italy). In this way, it was possible to understand which facilities can contribute to increasing the citizens’ well-being and the overall efficiency of the UGIs provision and maintenance. The proposed methodology represents an operational and replicable procedure to support different renewal projects in which citizens' opinions are crucial for developing long-term sustainable socio-ecological plans and actions.
    Keywords decision making ; markets ; metropolitan areas ; stakeholders ; travel ; urban parks ; Italy ; Revealed and Stated preferences models ; Urban green infrastructures (UGIs) ; Travel cost method (TCM) ; Random parameters logit (RPL) ; Discrete choice experiments (DCE) ; Environmental management
    Language English
    Dates of publication 2023-09
    Publishing place Elsevier B.V.
    Document type Article ; Online
    ZDB-ID 191971-4
    ISSN 0304-3800
    ISSN 0304-3800
    DOI 10.1016/j.ecolmodel.2023.110436
    Database NAL-Catalogue (AGRICOLA)

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  7. Article ; Online: Transcriptomic and Network Analysis Identifies Shared and Unique Pathways across Dementia Spectrum Disorders.

    Santiago, Jose A / Bottero, Virginie / Potashkin, Judith A

    International journal of molecular sciences

    2020  Volume 21, Issue 6

    Abstract: Background: Dementia is a growing public health concern with an estimated prevalence of 50 million people worldwide. Alzheimer's disease (AD) and vascular and frontotemporal dementias (VaD, FTD), share many clinical, genetical, and pathological features ...

    Abstract Background: Dementia is a growing public health concern with an estimated prevalence of 50 million people worldwide. Alzheimer's disease (AD) and vascular and frontotemporal dementias (VaD, FTD), share many clinical, genetical, and pathological features making the diagnosis difficult.
    Methods: In this study, we compared the transcriptome from the frontal cortex of patients with AD, VaD, and FTD to identify dysregulated pathways.
    Results: Upregulated genes in AD were enriched in adherens and tight junctions, mitogen-activated protein kinase, and phosphatidylinositol 3-kinase and protein kinase B/Akt signaling pathways, whereas downregulated genes associated with calcium signaling. Upregulated genes in VaD were centered on infectious diseases and nuclear factor kappa beta signaling, whereas downregulated genes are involved in biosynthesis of amino acids and the pentose phosphate pathway. Upregulated genes in FTD were associated with ECM receptor interactions and the lysosome, whereas downregulated genes were involved in glutamatergic synapse and MAPK signaling. The transcription factor KFL4 was shared among the 3 types of dementia.
    Conclusions: Collectively, we identified similarities and differences in dysregulated pathways and transcription factors among the dementias. The shared pathways and transcription factors may indicate a potential common etiology, whereas the differences may be useful for distinguishing dementias.
    MeSH term(s) Computational Biology/methods ; Data Mining ; Databases, Genetic ; Dementia/diagnosis ; Dementia/genetics ; Dementia/metabolism ; Diagnosis, Differential ; Female ; Gene Expression Profiling ; Gene Regulatory Networks ; Humans ; Male ; Molecular Sequence Annotation ; Signal Transduction ; Transcriptome
    Language English
    Publishing date 2020-03-17
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2019364-6
    ISSN 1422-0067 ; 1422-0067 ; 1661-6596
    ISSN (online) 1422-0067
    ISSN 1422-0067 ; 1661-6596
    DOI 10.3390/ijms21062050
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  8. Article: Transcriptomic and Network Meta-Analysis of Frontotemporal Dementias.

    Bottero, Virginie / Alrafati, Fahed / Santiago, Jose A / Potashkin, Judith A

    Frontiers in molecular neuroscience

    2021  Volume 14, Page(s) 747798

    Abstract: Frontotemporal lobar degeneration (FTLD), also known as frontotemporal dementia (FTD), results in a progressive decline in executive function, leading to behavioral changes, speech problems, and movement disorders. FTD is the second most common cause of ... ...

    Abstract Frontotemporal lobar degeneration (FTLD), also known as frontotemporal dementia (FTD), results in a progressive decline in executive function, leading to behavioral changes, speech problems, and movement disorders. FTD is the second most common cause of young-onset dementia affecting approximately 50
    Language English
    Publishing date 2021-10-15
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2452967-9
    ISSN 1662-5099
    ISSN 1662-5099
    DOI 10.3389/fnmol.2021.747798
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  9. Article ; Online: Usefulness of squash preparation cytology in the diagnosis of canine urinary bladder carcinomas.

    Pierini, Alessio / Criscuolo, Maria Carla / Bonfanti, Ugo / Benvenuti, Elena / Marchetti, Veronica / Bottero, Enrico

    Veterinary clinical pathology

    2022  Volume 51, Issue 4, Page(s) 498–506

    Abstract: Background: Epithelial cells show varying degrees of cytologic atypia in dogs with nonmalignant lesions (NML) and carcinomas (ubC) of the bladder, making histopathologic examination necessary for a definitive diagnosis.: Objectives: This study aimed ... ...

    Abstract Background: Epithelial cells show varying degrees of cytologic atypia in dogs with nonmalignant lesions (NML) and carcinomas (ubC) of the bladder, making histopathologic examination necessary for a definitive diagnosis.
    Objectives: This study aimed to investigate the diagnostic performance of squash preparation cytology and identify several cytomorphologic features of ubC to assist in diagnoses.
    Methods: Squash preparations were made and reviewed in dogs that underwent transurethral cystoscopy. The results were compared with histopathologic diagnoses. Two cytopathologists performed blinded assessments using a scoring system established for 11 cytologic features, including the presence of macronuclei, abnormal nucleoli, atypical mitoses, signet ring cells, multinucleated cells, nuclear molding, anisokaryosis, cytoplasmatic microvacuolization, cell arrangements, and neutrophil and lymphocyte infiltrations. Based on cytologic and histopathologic diagnoses, dogs were divided into ubC and NML groups. Associations between cytologic and histopathologic diagnoses were investigated, and agreement between the cytopathologists was calculated. Cytologic features were analyzed with multivariate logistic regression models. The performance of predictors in the final model was evaluated in terms of Sensitivity (Se), Specificity (Sp), accuracy, positive predictive value (PPV), negative predictive value (NPV), likelihood ratio positive (LR+), and negative (LR-) values, and the diagnostic odds ratio (DOR).
    Results: Forty-four dogs diagnosed with ubC, and 17 with NML were included in the study. Cytologic and histopathologic diagnoses were significantly associated with each cytopathologist. There was an almost perfect agreement between cytopathologists (κ = 0.88). The absence of neutrophilic infiltration, the presence of multinucleated cells, and nuclear molding were associated with ubC; using a combination of these features in parallel testing resulted in Se = 0.98, Sp = 0.65, accuracy = 0.89, PPV = 0.88, NPV = 0.92, LR + =2.77, LR- = 0.04, and DOR = 7.7.
    Conclusions: Squash preparation cytology could be a reliable technique to diagnose ubC in dogs. The best diagnostic combination was the absence of neutrophilic infiltration, multinucleated cells, and nuclear molding.
    MeSH term(s) Dogs ; Animals ; Urinary Bladder/pathology ; Urinary Bladder Neoplasms/diagnosis ; Urinary Bladder Neoplasms/veterinary ; Urinary Bladder Neoplasms/pathology ; Cytodiagnosis/veterinary ; Cytological Techniques/veterinary ; Carcinoma/diagnosis ; Carcinoma/veterinary ; Carcinoma/pathology ; Sensitivity and Specificity ; Dog Diseases/diagnosis ; Dog Diseases/pathology
    Language English
    Publishing date 2022-07-19
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2114702-4
    ISSN 1939-165X ; 0275-6382
    ISSN (online) 1939-165X
    ISSN 0275-6382
    DOI 10.1111/vcp.13151
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  10. Article ; Online: Relationship between Serum Protein Electrophoresis, Endoscopic and Histopathological Scores in 99 Cats with Chronic Enteropathy.

    Pierini, Alessio / Gori, Eleonora / Tulone, Fiorenza / Benvenuti, Elena / Bottero, Enrico / Ruggiero, Pietro / Marchetti, Veronica

    Veterinary sciences

    2022  Volume 9, Issue 9

    Abstract: Few studies have investigated total protein (TP) and serum protein electrophoresis (SPE) in cats with chronic enteropathy (CE). Cats diagnosed with CE were evaluated to investigate the relationships between TP, SPE and endoscopy, histopathology, and ... ...

    Abstract Few studies have investigated total protein (TP) and serum protein electrophoresis (SPE) in cats with chronic enteropathy (CE). Cats diagnosed with CE were evaluated to investigate the relationships between TP, SPE and endoscopy, histopathology, and extraintestinal involvement. Medical records were searched for cats with a history of chronic gastrointestinal signs and a final diagnosis of CE. Information on signalment, TP, SPE, endoscopic score, histopathological diagnosis and score, and concurrent hepatic or pancreatic ultrasonographic alterations was collected. Relationships between protein profiles and other variables were investigated. Ninety-nine cats were included in the study, 63 diagnosed with various degrees of bowel inflammation and 36 with small-cell alimentary lymphoma. The most common TP alteration was hypoproteinemia (24%). No significant differences were observed between protein profiles and endoscopic and histopathological severity scores. Forty-five cats showing concurrent pancreatic and/or hepatic ultrasonographic alterations, had significantly lower albumin, lower α-globulin, and higher γ-globulin levels than cats not showing concurrent alterations. Disease severity scores did not seem to influence the protein profile in cats with CE. Extraintestinal involvement may be suspected in cats with lower albumin and α-globulins and higher γ-globulins.
    Language English
    Publishing date 2022-08-24
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2768971-2
    ISSN 2306-7381 ; 2306-7381
    ISSN (online) 2306-7381
    ISSN 2306-7381
    DOI 10.3390/vetsci9090453
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