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  1. Book ; Online ; E-Book: The Ontology of Physics for Biology

    Cook, Daniel L. / Gennari, John H. / Neal, Maxwell Lewis

    Semantic Modeling of Multiscale, Multidomain Physiological Systems

    2024  

    Author's details Daniel L. Cook, John H. Gennari, and Maxwell L. Neal
    Keywords Biophysics/Mathematical models ; Biophysics/Computer simulation ; Ontologies (Information retrieval)
    Subject code 571.4
    Language English
    Size 1 online resource (241 pages)
    Edition First edition.
    Publisher CRC Press
    Publishing place Boca Raton, FL
    Document type Book ; Online ; E-Book
    Remark Zugriff für angemeldete ZB MED-Nutzerinnen und -Nutzer
    ISBN 0-429-89232-2 ; 9781032533100 ; 978-0-429-89232-5 ; 1032533102
    Database ZB MED Catalogue: Medicine, Health, Nutrition, Environment, Agriculture

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  2. Article: Agro-morphological traits of Cicer reticulatum Ladizinsky in comparison to C. echinospermum P.H. Davis in terms of potential to improve cultivated chickpea (C. arietinum L.)

    Talip, Mirlan / Alper Adak / Abdullah Kahraman / Jens Berger / Duygu Sari / Hatice Sari / R. V. Penmetsa / E. J. von Wettberg / D. R. Cook / Cengiz Toker

    Genetic resources and crop evolution. 2018 Mar., v. 65, no. 3

    2018  

    Abstract: Germplasm collections of C. reticulatum and C. echinospermum are limited, while both species face threats from over-grazing and habitat change in their natural environments. Recently many new accessions of C. reticulatum and C. echinospermum were ... ...

    Abstract Germplasm collections of C. reticulatum and C. echinospermum are limited, while both species face threats from over-grazing and habitat change in their natural environments. Recently many new accessions of C. reticulatum and C. echinospermum were collected in east and south-east Anatolia (Turkey) but they have not yet been evaluated for agro-morphological traits. Therefore, the current study investigated agro-morphological traits of new germplasm sources of C. reticulatum and C. echinospermum and evaluated resistance to biotic and abiotic stresses for chickpea improvement. The most attractive agro-morphological traits were canopy width, number of stems and pods per plant and biological yield. The most productive accessions of C. reticulatum and C. echinospermum had 712 and 625 pods per plant, respectively. Two distinct seed, flower and leaf shapes were found in accessions of C. echinospermum. Path analyses indicated that biological yield and harvest index had the most direct influence on seed yield in both species. Factor analyses showed that high seed yield in C. reticulatum depended on high biological yield and number of pods per plant, whereas high seed yield in C. echinospermum depended on harvest index. It was concluded that most accessions of C. reticulatum and C. echinospermum were not only resistant to some biotic and abiotic stresses but also had hidden alleles that could produce transgressive segregation in crosses to cultivated material.
    Keywords Cicer reticulatum ; abiotic stress ; alleles ; canopy ; chickpeas ; crossing ; flowers ; germplasm ; germplasm conservation ; habitats ; harvest index ; leaves ; overgrazing ; path analysis ; pods ; seed yield ; seeds ; stems ; transgressive segregation ; Turkey (country)
    Language English
    Dates of publication 2018-03
    Size p. 951-962.
    Publishing place Springer Netherlands
    Document type Article
    ZDB-ID 1134125-7
    ISSN 0925-9864
    ISSN 0925-9864
    DOI 10.1007/s10722-017-0587-0
    Database NAL-Catalogue (AGRICOLA)

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  3. Article: In vivo labelling of alpha5 subunit-containing GABA(A) receptors using the selective radioligand [(3)H]L-655,708.

    Atack, John R / Alder, Luanda / Cook, Susan M / Smith, Alison J / McKernan, Ruth M

    Neuropharmacology

    2005  Volume 49, Issue 2, Page(s) 220–229

    Abstract: ... In the present study, [(3)H]L-655,708 was used to label mouse brain benzodiazepine binding sites in vivo ... of mouse in vivo [(3)H]L-655,708 binding was consistent with selective in vivo labelling of alpha5 subunit ... containing GABA(A) receptors. Thus, diazepam was equipotent at inhibiting in vivo [(3)H]L-655,708 and [(3)H ...

    Abstract L-655,708 is an imidazobenzodiazepine possessing 30-70-fold selectivity for the benzodiazepine binding site of GABA(A) receptors containing an alpha5 rather than alpha1, alpha2 or alpha3 subunit. In the present study, [(3)H]L-655,708 was used to label mouse brain benzodiazepine binding sites in vivo. When compared to inhibition of in vivo binding of the non-selective ligand [(3)H]Ro 15-1788, the pharmacology of mouse in vivo [(3)H]L-655,708 binding was consistent with selective in vivo labelling of alpha5 subunit-containing GABA(A) receptors. Thus, diazepam was equipotent at inhibiting in vivo [(3)H]L-655,708 and [(3)H]Ro 15-1788 binding; zolpidem, which has very low affinity for alpha5-containing GABA(A) receptors, gave no inhibition of in vivo [(3)H]L-655,708 binding despite inhibiting in vivo [(3)H]Ro 15-1788 binding; and L-655,708 was more potent at inhibiting the in vivo binding of [(3)H]L-655,708 compared to [(3)H]Ro 15-1788. This pharmacological specificity of in vivo [(3)H]L-655,708 binding was confirmed autoradiographically. Hence, the anatomical distribution of in vivo [(3)H]L-655,708 binding was comparable to the distribution of alpha5-containing GABA(A) receptors identified in vitro. Moreover, this distribution was distinct from that identified using [(3)H]Ro 15-1788. These data therefore suggest that [(3)H]L-655,708 can be used to identify alpha5-containing GABA(A) receptors in vivo and that this ligand can be used to measure receptor occupancy of alpha5-selective ligands.
    MeSH term(s) Animals ; Benzodiazepines/metabolism ; Binding Sites ; Binding, Competitive ; Brain/drug effects ; Dose-Response Relationship, Drug ; Flumazenil/pharmacology ; GABA Agonists/pharmacology ; GABA Antagonists/pharmacology ; GABA Modulators/pharmacology ; Imidazoles/pharmacology ; Macromolecular Substances ; Male ; Mice ; Protein Subunits/drug effects ; Radioligand Assay/methods ; Receptors, GABA-A/chemistry ; Receptors, GABA-A/metabolism ; Recombinant Proteins/drug effects ; Recombinant Proteins/metabolism ; Spinal Cord/drug effects ; Time Factors ; Tritium
    Chemical Substances GABA Agonists ; GABA Antagonists ; GABA Modulators ; Imidazoles ; L 655,708 ; Macromolecular Substances ; Protein Subunits ; Receptors, GABA-A ; Recombinant Proteins ; Tritium (10028-17-8) ; Benzodiazepines (12794-10-4) ; Flumazenil (40P7XK9392)
    Language English
    Publishing date 2005-08
    Publishing country England
    Document type Comparative Study ; Journal Article
    ZDB-ID 218272-5
    ISSN 1873-7064 ; 0028-3908
    ISSN (online) 1873-7064
    ISSN 0028-3908
    DOI 10.1016/j.neuropharm.2005.03.004
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Fatty acid interrelationships in plasma, liver, muscle and adipose tissues of cattle fed safflower oil protected from ruminal hydrogenation davies, h l

    Cook, L.J / Scott, T.W / Faichney, G.J

    Lipids Feb 1972, 7 (2)

    1972  

    Keywords livestock ; animal science ; animal nutrition
    Language English
    Dates of publication 1972-02
    Size p. 83-89.
    Document type Article
    Database NAL-Catalogue (AGRICOLA)

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  5. Book ; Online: Age determination of ODP Hole 145-887, supplementary data to: Galbraith, Eric D; Jaccard, Samuel L; Pedersen, Thomas F; Sigman, Daniel M; Haug, Gerald H; Cook, Mea S; Southon, John R; Francois, Roger (2007): Carbon dioxide release from the North Pacific abyss during the last deglaciation. Nature, 449(7164), 890-894

    Galbraith, Eric D / Cook, Mea S / Francois, Roger / Haug, Gerald H / Jaccard, Samuel L / Pedersen, Thomas F / Sigman, Daniel M / Southon, John R

    2007  

    Abstract: Atmospheric carbon dioxide concentrations were significantly lower during glacial periods than during intervening interglacial periods, but the mechanisms responsible for this difference remain uncertain. Many recent explanations call on greater carbon ... ...

    Abstract Atmospheric carbon dioxide concentrations were significantly lower during glacial periods than during intervening interglacial periods, but the mechanisms responsible for this difference remain uncertain. Many recent explanations call on greater carbon storage in a poorly ventilated deep ocean during glacial periods (Trancois et al., 1997, doi:10.1038/40073; Toggweiler, 1999, doi:10.1029/1999PA900033; Stephens and Keeling, 2000, doi:10.1038/35004556; Marchitto et al., 2007, doi:10.1126/science.1138679; Sigman and Boyle, 2000, doi:10.1038/35038000), but direct evidence regarding the ventilation and respired carbon content of the glacial deep ocean is sparse and often equivocal (Broecker et al., 2004, doi:10.1126/science.1102293). Here we present sedimentary geochemical records from sites spanning the deep subarctic Pacific that -together with previously published results (Keigwin, 1998, doi:10.1029/98PA00874)- show that a poorly ventilated water mass containing a high concentration of respired carbon dioxide occupied the North Pacific abyss during the Last Glacial Maximum. Despite an inferred increase in deep Southern Ocean ventilation during the first step of the deglaciation (18,000-15,000 years ago) (Marchitto et al., 2007, doi:10.1126/science.1138679; Monnin et al., 2001, doi:10.1126/science.291.5501.112), we find no evidence for improved ventilation in the abyssal subarctic Pacific until a rapid transition ~14,600?years ago: this change was accompanied by an acceleration of export production from the surface waters above but only a small increase in atmospheric carbon dioxide concentration (Monnin et al., 2001, doi:10.1126/science.291.5501.112). We speculate that these changes were mechanistically linked to a roughly coeval increase in deep water formation in the North Atlantic (Robinson et al., 2005, doi:10.1126/science.1114832; Skinner nd Shackleton, 2004, doi:10.1029/2003PA000983; McManus et al., 2004, doi:10.1038/nature02494), which flushed respired carbon dioxide from northern abyssal waters, but also increased the supply of nutrients to the upper ocean, leading to greater carbon dioxide sequestration at mid-depths and stalling the rise of atmospheric carbon dioxide concentrations. Our findings are qualitatively consistent with hypotheses invoking a deglacial flushing of respired carbon dioxide from an isolated, deep ocean reservoir periods (Trancois et al., 1997, doi:10.1038/40073; Toggweiler, 1999, doi:10.1029/1999PA900033; Stephens and Keeling, 2000, doi:10.1038/35004556; Marchitto et al., 2007, doi:10.1126/science.1138679; Sigman and Boyle, 2000, doi:10.1038/35038000; Boyle, 1988, doi:10.1038/331055a0), but suggest that the reservoir may have been released in stages, as vigorous deep water ventilation switched between North Atlantic and Southern Ocean source regions.
    Language English
    Dates of publication 2007-9999
    Size Online-Ressource
    Publisher PANGAEA - Data Publisher for Earth & Environmental Science
    Publishing place Bremen/Bremerhaven
    Document type Book ; Online
    Note This dataset is supplement to doi:10.1038/nature06227
    DOI 10.1594/PANGAEA.769777
    Database Library catalogue of the German National Library of Science and Technology (TIB), Hannover

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  6. Article ; Online: Correction to: Association between cigar use, with and without cigarettes, and incident diagnosed COPD: a longitudinal cohort study.

    Cook, Steven / Buszkiewicz, James H / Levy, David T / Meza, Rafael / Fleischer, Nancy L

    Respiratory research

    2024  Volume 25, Issue 1, Page(s) 98

    Language English
    Publishing date 2024-02-23
    Publishing country England
    Document type Published Erratum
    ZDB-ID 2041675-1
    ISSN 1465-993X ; 1465-993X
    ISSN (online) 1465-993X
    ISSN 1465-993X
    DOI 10.1186/s12931-024-02728-y
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Discrimination, Smoking, and Cardiovascular Disease Risk: A Moderated Mediation Analysis With MESA.

    Cook, Stephanie H / Wood, Erica P / Stein, James H / McClelland, Robyn L

    Journal of the American Heart Association

    2024  Volume 13, Issue 5, Page(s) e032659

    Abstract: Background: Carotid intima-media thickness (cIMT) and carotid plaque are reliable indicators of cardiovascular disease risk, and research highlights that racial and ethnic minority individuals generally exhibit higher cIMT and carotid plaque than White ... ...

    Abstract Background: Carotid intima-media thickness (cIMT) and carotid plaque are reliable indicators of cardiovascular disease risk, and research highlights that racial and ethnic minority individuals generally exhibit higher cIMT and carotid plaque than White individuals. At present, the mechanisms driving these disparities among different racial and ethnic and biological sex groups are poorly understood.
    Methods and results: Data came from the baseline examination of MESA (Multi-Ethnic Study of Atherosclerosis). A total of 6814 participants aged 45 to 84 years free of clinical cardiovascular disease completed assessments on health behavior and perceived discrimination. Four sex-stratified moderated mediation models examined associations between discrimination, cigarette smoking, and mean cIMT and plaque. We hypothesized that cigarette use would mediate the association between discrimination and carotid artery disease features, and that these would differ by race and ethnicity. Indirect effects of discrimination on plaque were observed among Hispanic women such that discrimination was associated with cigarette use and, in turn, higher plaque (β=0.04 [95% CI, 0.01-0.08]). Indirect effects of discrimination on mean cIMT were found among Hispanic (β=0.003 [95% CI, 0.0001-0.007]) and White men (β=0.04 [95% CI, 0.01-0.08]) such that discrimination was associated with cigarette use and, in turn, higher cIMT. Finally, a positive indirect effect of discrimination on plaque was observed among Hispanic men (β=0.03 [95% CI, 0.004-0.07]). No other racial and ethnic differences were observed.
    Conclusions: To understand and address social determinants of cardiovascular disease, researchers must incorporate an intersectional framework that will allow us to understand the complex nature of discrimination and cardiovascular disease risk for individuals of varying intersecting identities and social positions.
    MeSH term(s) Male ; Humans ; Female ; Ethnicity ; Carotid Intima-Media Thickness ; Cardiovascular Diseases/diagnosis ; Cardiovascular Diseases/epidemiology ; Cardiovascular Diseases/complications ; Mediation Analysis ; Minority Groups ; Carotid Artery Diseases/complications ; Plaque, Atherosclerotic/complications ; Smoking/adverse effects ; Smoking/epidemiology ; Risk Factors
    Language English
    Publishing date 2024-02-23
    Publishing country England
    Document type Journal Article
    ZDB-ID 2653953-6
    ISSN 2047-9980 ; 2047-9980
    ISSN (online) 2047-9980
    ISSN 2047-9980
    DOI 10.1161/JAHA.123.032659
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Diversity in Clinical Trials - Next Steps.

    Rosen, Clifford J / Cook, Nakela L / Wilkins, Consuelo H

    The New England journal of medicine

    2022  Volume 387, Issue 15, Page(s) e34

    Language English
    Publishing date 2022-10-25
    Publishing country United States
    Document type Journal Article
    ZDB-ID 207154-x
    ISSN 1533-4406 ; 0028-4793
    ISSN (online) 1533-4406
    ISSN 0028-4793
    DOI 10.1056/NEJMp2201379
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Publication of pharmacy resident research projects: A systematic review and meta-analysis.

    Behal, Michael L / Fields, Paige E / Cook, Aaron M / Morgan, Rebecca J / Flannery, Alexander H

    American journal of health-system pharmacy : AJHP : official journal of the American Society of Health-System Pharmacists

    2024  

    Abstract: Disclaimer: In an effort to expedite the publication of articles, AJHP is posting manuscripts online as soon as possible after acceptance. Accepted manuscripts have been peer-reviewed and copyedited, but are posted online before technical formatting and ...

    Abstract Disclaimer: In an effort to expedite the publication of articles, AJHP is posting manuscripts online as soon as possible after acceptance. Accepted manuscripts have been peer-reviewed and copyedited, but are posted online before technical formatting and author proofing. These manuscripts are not the final version of record and will be replaced with the final article (formatted per AJHP style and proofed by the authors) at a later time.
    Purpose: Pharmacy residents often aspire to develop research skills through conducting a research project. Project publication rates among pharmacy residents are variable and at times low; however, previous studies have been limited to specific geographic regions and timeframes. This study sought to conduct a systematic review and meta-analysis to determine the proportion of pharmacy resident research projects published in the peer-reviewed literature.
    Methods: A systematic review of PubMed MEDLINE, Embase, and the Web of Science Core Collection was performed from database inception to May 25, 2023. Articles were included if they were full-text, peer-reviewed manuscripts of original research presenting observational data regarding pharmacy resident research project publication rates. Data extraction and assessment of risk of bias were conducted by 2 independent reviewers. A proportional meta-analysis using a random effects model of the included studies was conducted to generate a pooled, overall proportion.
    Results: The search yielded 5,225 records and 12 articles that met the inclusion criteria. All studies were retrospective and observational. Risk of selection and cohort identification biases was "high," whereas that of detection and timeframe biases was "low." The included studies represented 6,990 resident research projects, 777 of which were published in the peer-reviewed literature. Publication rates across individual studies ranged from 1.8% to 36.2%. The pooled proportion (scale of 0 to 1) of projects published was 0.13 (0.09-0.19).
    Conclusion: Pharmacy resident research project publication rates are low at 13%. Furthermore, studies reporting project publication rates over time suggest a neutral or negative trend in publication rates despite an exponential increase in the number of pharmacy residents.
    Language English
    Publishing date 2024-03-26
    Publishing country England
    Document type Journal Article
    ZDB-ID 1224627-x
    ISSN 1535-2900 ; 1079-2082
    ISSN (online) 1535-2900
    ISSN 1079-2082
    DOI 10.1093/ajhp/zxae091
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Association between cigar use, with and without cigarettes, and incident diagnosed COPD: a longitudinal cohort study.

    Cook, Steven / Buszkiewicz, James H / Levy, David T / Meza, Rafael / Fleischer, Nancy L

    Respiratory research

    2024  Volume 25, Issue 1, Page(s) 13

    Abstract: Background: While regular cigar smoking is believed to carry similar health risks as regular cigarette smoking, the impact of cigar use, alone or in combination with cigarettes, on obstructive pulmonary disease (COPD) has not been well characterized. ... ...

    Abstract Background: While regular cigar smoking is believed to carry similar health risks as regular cigarette smoking, the impact of cigar use, alone or in combination with cigarettes, on obstructive pulmonary disease (COPD) has not been well characterized. The purpose of this study was to examine the prospective association between exclusive and dual cigar and cigarette use and incident self-reported diagnosed COPD.
    Methods: This study used data from Waves 1-5 (2013-2019) of the Population Assessment of Tobacco and Health (PATH) Study, a nationally representative survey of U.S. adults. Longitudinal data from adults aged 40 to 79 at Wave 1, without a pre-existing COPD diagnosis who participated at follow-up interview were analyzed. A time-varying current tobacco exposure, lagged by one wave and categorized as: (a) never/non-current use; (b) exclusive cigar use; (c) exclusive cigarette use; and (d) dual cigar/cigarette use. Multivariable models adjusted for demographics (age, sex, race or ethnicity, education), clinical risk factors (asthma, obesity), and smoking-related confounders (second-hand smoke exposure, other combustible tobacco product use, e-cigarette use, time since quitting, cigarette pack-years). The incidence of self-reported diagnosed COPD was estimated using discrete-time survival models, using a general linear modeling (GLM) approach with a binomial distribution and a complementary log-log link function.
    Results: The analytic sample consisted of 9,556 adults with a mean (SD) age of 56 (10.4), who were predominately female (52.8%) and Non-Hispanic White (70.8%). A total of 906 respondents reported a diagnosis of COPD at follow-up. In the fully adjusted model, exclusive cigar use (adjusted hazard ratio (aHR) = 1.57, 95% CI: 0.77, 3.21) was not associated with increased COPD risk compared to non-use, while exclusive cigarette use (aHR = 1.48, 95% CI: 1.13, 1.93) and dual cigar/cigarette use (aHR = 1.88, 95% CI: 1.24, 2.85) were.
    Conclusions: Exclusive cigarette use and dual cigar/cigarette use were associated with diagnosed incident COPD. These results suggest that cigars, when used in combination with cigarettes, may be associated with poorer COPD health outcomes. Dual use may promote a higher likelihood of inhaling cigar smoke, and future research would benefit from examining whether inhalation of cigar smoke increases COPD risk.
    MeSH term(s) Adult ; Humans ; Female ; Longitudinal Studies ; Electronic Nicotine Delivery Systems ; Tobacco Products/adverse effects ; Cohort Studies ; Pulmonary Disease, Chronic Obstructive/diagnosis ; Pulmonary Disease, Chronic Obstructive/epidemiology
    Language English
    Publishing date 2024-01-04
    Publishing country England
    Document type Journal Article
    ZDB-ID 2041675-1
    ISSN 1465-993X ; 1465-993X
    ISSN (online) 1465-993X
    ISSN 1465-993X
    DOI 10.1186/s12931-023-02649-2
    Database MEDical Literature Analysis and Retrieval System OnLINE

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