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Article ; Online: Assessment of Oral Anticoagulant Adverse Drug Events Before and After Implementation of a Real-Time Clinical Surveillance Tool.

Daniel, Joel W / Kramer, Joan / Burgess, L Hayley

2019 Volume 17, Issue 4, Page(s) e350–e354

Abstract: Objective: The aim of the study was to determine the effect on occurrence of oral anticoagulant adverse drug events (ADEs) after implementation of a real-time clinical surveillance tool in a large health system.: Methods: Records of patients ... ...

Abstract	Objective: The aim of the study was to determine the effect on occurrence of oral anticoagulant adverse drug events (ADEs) after implementation of a real-time clinical surveillance tool in a large health system. Methods: Records of patients receiving an oral anticoagulant during a 6-month period before and after implementation of a real-time clinical surveillance tool were reviewed for 31 hospitals within a nationwide health system. The real-time clinical surveillance tool analyzed clinical data from the electronic medical record and alerted the pharmacist of potential opportunities for patient clinical intervention. Oral anticoagulant administration data, International Classification of Diseases, Ninth Edition code documentation of ADEs caused by oral anticoagulants, and alert notification data from the real-time clinical surveillance tool were evaluated. Results: A total of 56,761 patients were included in the study. The oral anticoagulant ADE ratio decreased from 0.69% during the period before implementation of the real-time clinical surveillance tool to 0.41% during the period after implementation (P < 0.001). Most alert notifications and greatest impact on ADE ratio occurred in patients administered a single oral anticoagulant during hospitalization. Conclusions: Implementation of a real-time clinical surveillance tool prompting pharmacist intervention reduced the oral anticoagulant ADE ratio for the health system.
MeSH term(s)	Anticoagulants/adverse effects ; Documentation ; Drug-Related Side Effects and Adverse Reactions ; Electronic Health Records ; Humans ; Pharmacists
Chemical Substances	Anticoagulants
Language	English
Publishing date	2019-04-25
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	2394324-5
ISSN	1549-8425 ; 1549-8417
ISSN (online)	1549-8425
ISSN	1549-8417
DOI	10.1097/PTS.0000000000000607
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Article ; Online: The American Society of Colon and Rectal Surgeons Clinical Practice Guidelines for the Reduction of Venous Thromboembolic Disease in Colorectal Surgery.

Patel, Sunil V / Liberman, Sender A / Burgess, Pamela L / Goldberg, Joel E / Poylin, Vitaliy Y / Messick, Craig A / Davis, Bradley R / Feingold, Daniel L / Lightner, Amy L / Paquette, Ian M

Diseases of the colon and rectum

2023 Volume 66, Issue 9, Page(s) 1162–1173

Language	English
Publishing date	2023-06-12
Publishing country	United States
Document type	Journal Article
ZDB-ID	212581-x
ISSN	1530-0358 ; 0012-3706
ISSN (online)	1530-0358
ISSN	0012-3706
DOI	10.1097/DCR.0000000000002975
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Article ; Online: Histopathological screening of Pontogammarus robustoides (Amphipoda), an invader on route to the United Kingdom.

Warren, Daniel A / Burgess, Amy L / Prati, Sebastian / Bacela-Spychalska, Karolina / S J Rogers, Martin / Bojko, Jamie

Journal of invertebrate pathology

2023 Volume 200, Page(s) 107970

Abstract: Biological invasions may act as conduits for pathogen introduction. To determine which invasive non-native species pose the biggest threat, we must first determine the symbionts (pathogens, parasites, commensals, mutualists) they carry, via pathological ... ...

Abstract	Biological invasions may act as conduits for pathogen introduction. To determine which invasive non-native species pose the biggest threat, we must first determine the symbionts (pathogens, parasites, commensals, mutualists) they carry, via pathological surveys that can be conducted in multiple ways (i.e., molecular, pathological, and histological). Whole animal histopathology allows for the observation of pathogenic agents (virus to Metazoa), based on their pathological effect upon host tissue. Where the technique cannot accurately predict pathogen taxonomy, it does highlight pathogen groups of importance. This study provides a histopathological survey of Pontogammarus robustoides (invasive amphipod in Europe) as a baseline for symbiont groups that may translocate to other areas/hosts in future invasions. Pontogammarus robustoides (n = 1,141) collected throughout Poland (seven sites), were noted to include a total of 13 symbiotic groups: a putative gut epithelia virus (overall prevalence = 0.6%), a putative hepatopancreatic cytoplasmic virus (1.4%), a hepatopancreatic bacilliform virus (15.7%), systemic bacteria (0.7%), fouling ciliates (62.0%), gut gregarines (39.5%), hepatopancreatic gregarines (0.4%), haplosporidians (0.4%), muscle infecting microsporidians (6.4%), digeneans (3.5%), external rotifers (3.0%), an endoparasitic arthropod (putatively: Isopoda) (0.1%), and Gregarines with putative microsporidian infections (1.4%). Parasite assemblages partially differed across collection sites. Co-infection patterns revealed strong positive and negative associations between five parasites. Microsporidians were common across sites and could easily spread to other areas following the invasion of P. robustoides. By providing this initial histopathological survey, we hope to provide a concise list of symbiont groups for risk-assessment in the case of a novel invasion by this highly invasive amphipod.
MeSH term(s)	Animals ; Amphipoda/microbiology ; Host-Parasite Interactions ; Parasites ; Microsporidia ; United Kingdom ; Introduced Species ; Apicomplexa/physiology
Language	English
Publishing date	2023-07-06
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	390885-9
ISSN	1096-0805 ; 0022-2011
ISSN (online)	1096-0805
ISSN	0022-2011
DOI	10.1016/j.jip.2023.107970
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Article ; Online: Brain alterations in regions associated with end-organ diabetic microvascular disease in diabetes mellitus: A UK Biobank study.

Burgess, Jamie / de Bezenac, Christophe / Keller, Simon S / Frank, Bernhard / Petropoulos, Ioannis N / Garcia-Finana, Marta / Jackson, Timothy L / Kirthi, Varo / Cuthbertson, Daniel J / Selvarajah, Dinesh / Tesfaye, Solomon / Alam, Uazman

Diabetes/metabolism research and reviews

2024 Volume 40, Issue 2, Page(s) e3772

Abstract: Background: Diabetes mellitus (DM) is associated with structural grey matter alterations in the brain, including changes in the somatosensory and pain processing regions seen in association with diabetic peripheral neuropathy. In this case-controlled ... ...

Abstract	Background: Diabetes mellitus (DM) is associated with structural grey matter alterations in the brain, including changes in the somatosensory and pain processing regions seen in association with diabetic peripheral neuropathy. In this case-controlled biobank study, we aimed to ascertain differences in grey and white matter anatomy in people with DM compared with non-diabetic controls (NDC). Methods: This study utilises the UK Biobank prospective, population-based, multicentre study of UK residents. Participants with diabetes and age/gender-matched controls without diabetes were selected in a three-to-one ratio. We excluded people with underlying neurological/neurodegenerative disease. Whole brain, cortical, and subcortical volumes (188 regions) were compared between participants with diabetes against NDC corrected for age, sex, and intracranial volume using univariate regression models, with adjustment for multiple comparisons. Diffusion tensor imaging analysis of fractional anisotropy (FA) was performed along the length of 50 white matter tracts. Results: We included 2404 eligible participants who underwent brain magnetic resonance imaging (NDC, n = 1803 and DM, n = 601). Participants with DM had a mean (±standard deviation) diagnostic duration of 18 ± 11 years, with adequate glycaemic control (HbA1 Interpretation: This analysis suggests that anatomic differences in brain regions are present in a cohort with adequately controlled glycaemia without prevalent microvascular disease when compared with volunteers without diabetes. We hypothesise that these differences may predate overt end-organ damage and complications such as diabetic neuropathy and retinopathy. Central nervous system alterations/neuroplasticity may occur early in the natural history of microvascular complications; therefore, brain imaging should be considered in future mechanistic and interventional studies of DM.
MeSH term(s)	Humans ; Diffusion Tensor Imaging/methods ; Prospective Studies ; Neurodegenerative Diseases/pathology ; Biological Specimen Banks ; UK Biobank ; Brain/diagnostic imaging ; Brain/pathology ; Magnetic Resonance Imaging/methods ; Diabetes Mellitus/epidemiology ; Diabetes Mellitus/pathology ; Pain/pathology
Language	English
Publishing date	2024-02-16
Publishing country	England
Document type	Multicenter Study ; Journal Article
ZDB-ID	1470192-3
ISSN	1520-7560 ; 1520-7552
ISSN (online)	1520-7560
ISSN	1520-7552
DOI	10.1002/dmrr.3772
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Article ; Online: Histopathological screening of Pontogammarus robustoides (Amphipoda), an invader on route to the United Kingdom

Warren, Daniel A. / Burgess, Amy L. / Prati, Sebastian / Bacela-Spychalska, Karolina / S. J. Rogers, Martin / Bojko, Jamie

Journal of Invertebrate Pathology. 2023 Sept., v. 200 p.107970-

2023

Abstract	Biological invasions may act as conduits for pathogen introduction. To determine which invasive non-native species pose the biggest threat, we must first determine the symbionts (pathogens, parasites, commensals, mutualists) they carry, via pathological surveys that can be conducted in multiple ways (i.e., molecular, pathological, and histological). Whole animal histopathology allows for the observation of pathogenic agents (virus to Metazoa), based on their pathological effect upon host tissue. Where the technique cannot accurately predict pathogen taxonomy, it does highlight pathogen groups of importance. This study provides a histopathological survey of Pontogammarus robustoides (invasive amphipod in Europe) as a baseline for symbiont groups that may translocate to other areas/hosts in future invasions. Pontogammarus robustoides (n = 1,141) collected throughout Poland (seven sites), were noted to include a total of 13 symbiotic groups: a putative gut epithelia virus (overall prevalence = 0.6%), a putative hepatopancreatic cytoplasmic virus (1.4%), a hepatopancreatic bacilliform virus (15.7%), systemic bacteria (0.7%), fouling ciliates (62.0%), gut gregarines (39.5%), hepatopancreatic gregarines (0.4%), haplosporidians (0.4%), muscle infecting microsporidians (6.4%), digeneans (3.5%), external rotifers (3.0%), an endoparasitic arthropod (putatively: Isopoda) (0.1%), and Gregarines with putative microsporidian infections (1.4%). Parasite assemblages partially differed across collection sites. Co-infection patterns revealed strong positive and negative associations between five parasites. Microsporidians were common across sites and could easily spread to other areas following the invasion of P. robustoides. By providing this initial histopathological survey, we hope to provide a concise list of symbiont groups for risk-assessment in the case of a novel invasion by this highly invasive amphipod.
Keywords	Amphipoda ; Ciliophora ; Isopoda ; Microsporidia ; Rotifera ; arthropods ; digestive system ; endoparasites ; gregarines ; histology ; histopathology ; introduced species ; invasive species ; mixed infection ; muscles ; pathogens ; risk assessment ; surveys ; symbionts ; taxonomy ; viruses ; Poland ; United Kingdom ; Biological Invasions ; Haplosporidium ; Parasite
Language	English
Dates of publication	2023-09
Publishing place	Elsevier Inc.
Document type	Article ; Online
ZDB-ID	390885-9
ISSN	1096-0805 ; 0022-2011
ISSN (online)	1096-0805
ISSN	0022-2011
DOI	10.1016/j.jip.2023.107970
Database	NAL-Catalogue (AGRICOLA)

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Article: Histopathological survey for parasite groups in Gammarus varsoviensis (Amphipoda).

Warren, Daniel A / Burgess, Amy L / Karemera, Felix / Bacela-Spychalska, Karolina / Stentiford, Grant D / Bojko, Jamie

Diseases of aquatic organisms

2022 Volume 149, Page(s) 47–51

Abstract: Invasive non-native amphipods (Crustacea) are becoming a model system in which to explore the impact and diversity of invasive parasites-parasites that are carried along an invasion route with their hosts. Gammarus varsoviensis is a freshwater amphipod ... ...

Abstract	Invasive non-native amphipods (Crustacea) are becoming a model system in which to explore the impact and diversity of invasive parasites-parasites that are carried along an invasion route with their hosts. Gammarus varsoviensis is a freshwater amphipod species that has a recently explored invasion history. We provide a histopathological survey for a putatively invasive non-native population of this amphipod, identifying 8 symbiotic groups: Acanthocephala, Rotifera, Digenea, ciliated protozoa, Haplosporidia, Microsporidia, 'Candidatus Aquirickettsiella', and a putative nudivirus, at various prevalence. Our survey indicates that the parasites have no sex bias and that each has the potential to be carried in either sex along an invasion route. We discuss the pathology and prevalence of the above symbiotic groups and whether those that are parasitic may pose a risk if G. varsoviensis were to carry them to novel locations.
MeSH term(s)	Acanthocephala ; Amphipoda/parasitology ; Animals ; Host-Parasite Interactions ; Microsporidia ; Parasites
Language	English
Publishing date	2022-05-05
Publishing country	Germany
Document type	Journal Article
ISSN	0177-5103
ISSN	0177-5103
DOI	10.3354/dao03658
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Article ; Online: The American Society of Colon and Rectal Surgeons Clinical Practice Guidelines for the Management of Anorectal Abscess, Fistula-in-Ano, and Rectovaginal Fistula.

Gaertner, Wolfgang B / Burgess, Pamela L / Davids, Jennifer S / Lightner, Amy L / Shogan, Benjamin D / Sun, Mark Y / Steele, Scott R / Paquette, Ian M / Feingold, Daniel L

Diseases of the colon and rectum

2022 Volume 65, Issue 8, Page(s) 964–985

MeSH term(s)	Abscess/surgery ; Anus Diseases ; Colon ; Female ; Humans ; Rectal Fistula/surgery ; Rectovaginal Fistula/surgery ; Surgeons
Language	English
Publishing date	2022-07-05
Publishing country	United States
Document type	Journal Article
ZDB-ID	212581-x
ISSN	1530-0358 ; 0012-3706
ISSN (online)	1530-0358
ISSN	0012-3706
DOI	10.1097/DCR.0000000000002473
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Article ; Online: An eIF3d-dependent switch regulates HCMV replication by remodeling the infected cell translation landscape to mimic chronic ER stress.

Thompson, Letitia / Depledge, Daniel P / Burgess, Hannah M / Mohr, Ian

Cell reports

2022 Volume 39, Issue 5, Page(s) 110767

Abstract: Regulated loading of eIF3-bound 40S ribosomes on capped mRNA is generally dependent upon the translation initiation factor eIF4E; however, mRNA translation often proceeds during physiological stress, such as virus infection, when eIF4E availability and ... ...

Abstract	Regulated loading of eIF3-bound 40S ribosomes on capped mRNA is generally dependent upon the translation initiation factor eIF4E; however, mRNA translation often proceeds during physiological stress, such as virus infection, when eIF4E availability and activity are limiting. It remains poorly understood how translation of virus and host mRNAs are regulated during infection stress. While initially sensitive to mTOR inhibition, which limits eIF4E-dependent translation, we show that protein synthesis in human cytomegalovirus (HCMV)-infected cells unexpectedly becomes progressively reliant upon eIF3d. Targeting eIF3d selectively inhibits HCMV replication, reduces polyribosome abundance, and interferes with expression of essential virus genes and a host gene expression signature indicative of chronic ER stress that fosters HCMV reproduction. This reveals a strategy whereby cellular eIF3d-dependent protein production is hijacked to exploit virus-induced ER stress. Moreover, it establishes how switching between eIF4E and eIF3d-responsive cap-dependent translation can differentially tune virus and host gene expression in infected cells.
MeSH term(s)	Cytomegalovirus/physiology ; Eukaryotic Initiation Factor-3/genetics ; Eukaryotic Initiation Factor-3/metabolism ; Eukaryotic Initiation Factor-4E/metabolism ; Humans ; Polyribosomes/metabolism ; Protein Biosynthesis ; RNA, Messenger/genetics ; RNA, Messenger/metabolism ; Virus Replication
Chemical Substances	EIF3D protein, human ; Eukaryotic Initiation Factor-3 ; Eukaryotic Initiation Factor-4E ; RNA, Messenger
Language	English
Publishing date	2022-04-25
Publishing country	United States
Document type	Journal Article
ZDB-ID	2649101-1
ISSN	2211-1247 ; 2211-1247
ISSN (online)	2211-1247
ISSN	2211-1247
DOI	10.1016/j.celrep.2022.110767
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Article: Rilotumumab Resistance Acquired by Intracrine Hepatocyte Growth Factor Signaling.

Cecchi, Fabiola / Rex, Karen / Schmidt, Joanna / Vocke, Cathy D / Lee, Young H / Burkett, Sandra / Baker, Daniel / Damore, Michael A / Coxon, Angela / Burgess, Teresa L / Bottaro, Donald P

Cancers

2023 Volume 15, Issue 2

Abstract: Drug resistance is a long-standing impediment to effective systemic cancer therapy and acquired drug resistance is a growing problem for molecularly-targeted therapeutics that otherwise have shown unprecedented successes in disease control. The ... ...

Abstract	Drug resistance is a long-standing impediment to effective systemic cancer therapy and acquired drug resistance is a growing problem for molecularly-targeted therapeutics that otherwise have shown unprecedented successes in disease control. The hepatocyte growth factor (HGF)/Met receptor pathway signaling is frequently involved in cancer and has been a subject of targeted drug development for nearly 30 years. To anticipate and study specific resistance mechanisms associated with targeting this pathway, we engineered resistance to the HGF-neutralizing antibody rilotumumab in glioblastoma cells harboring autocrine HGF/Met signaling, a frequent abnormality of this brain cancer in humans. We found that rilotumumab resistance was acquired through an unusual mechanism comprising dramatic HGF overproduction and misfolding, endoplasmic reticulum (ER) stress-response signaling and redirected vesicular trafficking that effectively sequestered rilotumumab and misfolded HGF from native HGF and activated Met. Amplification of
Language	English
Publishing date	2023-01-11
Publishing country	Switzerland
Document type	Journal Article
ZDB-ID	2527080-1
ISSN	2072-6694
ISSN	2072-6694
DOI	10.3390/cancers15020460
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Article ; Online: Expanding the molecular signatures of malignant ossifying fibromyxoid tumours with two novel gene fusions: PHF1::FOXR1 and PHF1::FOXR2.

Srivastava, Pooja / Zilla, Megan L / Naous, Rana / Marker, Daniel / Khoshnoodi, Pooria / Burgess, Melissa / Herradura, Armando / Wu, Jinhua / Surrey, Lea F / John, Ivy

Histopathology

2023 Volume 82, Issue 6, Page(s) 946–952

Abstract: Aims: Ossifying fibromyxoid tumor (OFMT) is a rare enigmatic tumor of uncertain differentiation that can be classified as typical, atypical, and malignant subtypes based on cellularity, nuclear grade, and mitotic activity. The majority of OFMTs, ... ...

Abstract	Aims: Ossifying fibromyxoid tumor (OFMT) is a rare enigmatic tumor of uncertain differentiation that can be classified as typical, atypical, and malignant subtypes based on cellularity, nuclear grade, and mitotic activity. The majority of OFMTs, regardless of the risk of malignancy, harbor genetic translocations. We report two malignant OFMTs, including one with evidence of dedifferentiation, with novel genefusions. Methods and results: Case 1 was a 63-year-old male with a dedifferentiated OFMT arising in the right wrist, while case 2 was a 41-year-old male with a malignant OFMT presenting as a posterior mediastinal mass. Case 2 showed multifocal expression with EMA and synaptophysin, while desmin and S100 were absent in both tumors. NGS sequencing studies detected PHF1::FOXR1 and PHF1::FOXR2 gene fusions in cases 1 and 2, respectively. Despite aggressive regimens, both progressed with wide spread metastases resulting in death within six years of diagnosis. Conclusions: We expand the genetic spectrum of OFMTs with two novel gene fusions, PHF1::FOXR1 and PHF1::FOXR2. These cases confirm the previously reported tendencies for OFMTs with rare variant fusions to demonstrate malignant behavior, unusual morphology, and non-specific immunophenotype.
MeSH term(s)	Male ; Humans ; Middle Aged ; Adult ; Fibroma, Ossifying/pathology ; Soft Tissue Neoplasms/pathology ; Fibroma/pathology ; Gene Fusion ; DNA-Binding Proteins/genetics ; Polycomb-Group Proteins/genetics ; Polycomb-Group Proteins/metabolism ; Forkhead Transcription Factors/genetics
Chemical Substances	PHF1 protein, human ; DNA-Binding Proteins ; Polycomb-Group Proteins ; FOXR2 protein, human ; Forkhead Transcription Factors
Language	English
Publishing date	2023-02-06
Publishing country	England
Document type	Case Reports ; Journal Article
ZDB-ID	131914-0
ISSN	1365-2559 ; 0309-0167
ISSN (online)	1365-2559
ISSN	0309-0167
DOI	10.1111/his.14868
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