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  1. Article: Re: Hinduja K, Samuel R, Mitchell S. Problem-based learning: is anatomy a casualty? Surgeon 2005; 3 (2):84-87.

    Shankar, J

    The surgeon : journal of the Royal Colleges of Surgeons of Edinburgh and Ireland

    2006  Volume 4, Issue 2, Page(s) 121; author reply 121

    MeSH term(s) Anatomy/education ; Clinical Competence ; Education, Medical, Undergraduate ; Humans ; Problem-Based Learning ; United Kingdom
    Language English
    Publishing date 2006-04
    Publishing country Scotland
    Document type Letter ; Comment
    ZDB-ID 2102927-1
    ISSN 1479-666X
    ISSN 1479-666X
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Brain banking in India: Relevance in current day practice.

    Shankar, S K / Mahadevan, Anita

    Indian journal of pathology & microbiology

    2022  Volume 65, Issue Supplement, Page(s) S218–S225

    Abstract: Biobanks are set to become the norm. The explosion of new and powerful technologies like genomics and other multiomics has catapulted research from individual laboratories to multi-institutional and international partners. Today, with increasing life ... ...

    Abstract Biobanks are set to become the norm. The explosion of new and powerful technologies like genomics and other multiomics has catapulted research from individual laboratories to multi-institutional and international partners. Today, with increasing life span, and the rising incidence of brain diseases, Brain Banks have become an invaluable source for unravelling the pathogenesis of several brain disorders, and develop effective therapies. The article briefly reviews the evolution of brain banking, rise of global networks, with a brief overview of steps involved from donor recruitment, protocols of processing, storage, annotation, and tissue distribution. The ethics of biobanking is one of the most controversial issues in bioethics, the key issues being consent, confidentiality, and commercialisation. Regulatory authorities in different countries and in India, the Indian Council of Medical Research has taken a lead to formulate new ethical guidelines for research involving human participants protecting rights, and well-being of research participants. Although brain banks have been established in the 1960s, in India, the first Brain Bank was established in 1995 at the National Institute of Mental Health and Neurosciences, Bengaluru. Now a network with two more Brain banks is being established in the country. The challenges and benefits of establishing the first Brain Bank as a National Research Facility in India is shared. For optimising available resources and promote brain banking, it is essential for medical professionals, and the public to perceive the crucial advantage in conversion of biological waste into invaluable resources for neuroscience. This will be the greatest "gift of hope" that we can offer for the future generations to overcome hitherto untreatable disorders such as dementias.
    MeSH term(s) Biological Specimen Banks ; Biomedical Research ; Brain ; Brain Diseases ; Humans ; India ; Tissue Donors
    Language English
    Publishing date 2022-05-13
    Publishing country India
    Document type Journal Article ; Review
    ZDB-ID 197621-7
    ISSN 0974-5130 ; 0377-4929
    ISSN (online) 0974-5130
    ISSN 0377-4929
    DOI 10.4103/ijpm.ijpm_113_22
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: An Explainable AI driven Decision Support System for COVID-19 Diagnosis using Fused Classification and Segmentation.

    Niranjan, K / Shankar Kumar, S / Vedanth, S / Chitrakala, Dr S

    Procedia computer science

    2023  Volume 218, Page(s) 1915–1925

    Abstract: The coronavirus has caused havoc on billions of people worldwide. The Reverse Transcription Polymerase Chain Reaction(RT-PCR) test is widely accepted as a standard diagnostic tool for detecting infection, however, the severity of infection can't be ... ...

    Abstract The coronavirus has caused havoc on billions of people worldwide. The Reverse Transcription Polymerase Chain Reaction(RT-PCR) test is widely accepted as a standard diagnostic tool for detecting infection, however, the severity of infection can't be measured accurately with RT-PCR results. Chest CT Scans of infected patients can manifest the presence of lesions with high sensitivity. During the pandemic, there is a dearth of competent doctors to examine chest CT images. Therefore, a Guided Gradcam based Explainable Classification and Segmentation system (GGECS) which is a real-time explainable classification and lesion identification decision support system is proposed in this work. The classification model used in the proposed GGECS system is inspired by Res2Net. Explainable AI techniques like GradCam and Guided GradCam are used to demystify Convolutional Neural Networks (CNNs). These explainable systems can assist in localizing the regions in the CT scan that contribute significantly to the system's prediction. The segmentation model can further reliably localize infected regions. The segmentation model is a fusion between the VGG-16 and the classification network. The proposed classification model in GGECS obtains an overall accuracy of 98.51 % and the segmentation model achieves an IoU score of 0.595.
    Language English
    Publishing date 2023-01-31
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 2557358-5
    ISSN 1877-0509
    ISSN 1877-0509
    DOI 10.1016/j.procs.2023.01.168
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  4. Article ; Online: Thermal spray processes influencing surface chemistry and in-vitro hemocompatibility of hydroxyapatite-based orthopedic implants.

    Shankar, Deep / Jayaganesh, K / Gowda, Niranjan / Lakshmi, K S / Jayanthi, K J / Jambagi, Sudhakar C

    Biomaterials advances

    2024  Volume 158, Page(s) 213791

    Abstract: Orthopedic implants made from titanium are a popular choice in the medical field because of their remarkable strength-to-weight ratio. Nevertheless, they may not interact well with human blood, resulting in thrombosis and hemolysis. In fact, non- ... ...

    Abstract Orthopedic implants made from titanium are a popular choice in the medical field because of their remarkable strength-to-weight ratio. Nevertheless, they may not interact well with human blood, resulting in thrombosis and hemolysis. In fact, non-hemocompatibility is believed to be responsible for about 31 % of medical device failures in the US alone, requiring painful and expensive revision surgery. To address this issue, bioactive hydroxyapatite coatings are applied to Ti-6Al-4V implants using thermal spray techniques. However, the temperature used during thermal processing impacts the coating's surface properties, affecting the mechanical and biological properties. Furthermore, the effectiveness of HA coatings on titanium for orthopedic applications has not been validated by biocompatibility tests, particularly hemocompatibility. In this study, we aimed to investigate the relative efficacy of three thermal spray processes of different temperature ranges: Atmospheric plasma spray (APS) (high temperature), Flame spray (FS) (moderate temperature), and High-Velocity Oxy-Fuel spray (HVOF) (low temperature), and study their impact on coating's surface properties, affecting blood components and implant's strength. The crystallinity of the HA coating increased by 32 % with a decrease in the operating temperature (APS < FS < HVOF). HVOF coating exhibited a ~ 34 % and ~ 120 % improvement in adhesion strength and ~ 31 % and 59 % increment in hardness compared to APS and FS coating, respectively, attributed to its low porosity, low coating thickness (~55 μm), and high degree of crystallinity. The HVOF coating showcased a significant increase in non-hemolytic behavior, with hemolysis rates ~8 and ~ 11 times lower than APS and FS coatings, respectively, owing to its smooth texture and high degree of crystallinity (p < 0.05). Furthermore, the HVOF coating exhibited minimal blood clotting based on the whole blood clotting assay, again confirmed by PT and aPTT assays showing delayed clotting time, indicating its non-thrombogenic behavior. The number of platelets adhered to the three coatings showed no significant difference compared to Ti-6Al-4V. APS and FS coatings showed low platelet activation, unlike HVOF coating and titanium, which revealed round platelets, similar to the negative control. Neither titanium nor HA coatings exhibited antibacterial properties, which may be due to their high affinity for organic substances, which promotes bacterial adhesion and replication. Among the three thermal processes, HVOF coating displayed good apatite growth, non-hemolytic, and non-thrombogenicity with no platelet activation owing to its low processing temperature, high degree of crystallinity (89.7 %), hydrophilicity, smooth (~4 μm) and dense (~97 %) microstructural properties. The results demonstrated that the HVOF-HA coating presented in this work meets the hemocompatible requirements and shows promise for prospective application as an orthopedic implant. Furthermore, this study has the potential to significantly reduce the use of animals in in-vivo research and improve their welfare while also cutting costs.
    MeSH term(s) Animals ; Humans ; Durapatite/pharmacology ; Hemolysis ; Titanium/pharmacology ; Orthopedics ; Apatites
    Chemical Substances Durapatite (91D9GV0Z28) ; Titanium (D1JT611TNE) ; Apatites
    Language English
    Publishing date 2024-01-28
    Publishing country Netherlands
    Document type Journal Article
    ISSN 2772-9508
    ISSN (online) 2772-9508
    DOI 10.1016/j.bioadv.2024.213791
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Effect of Surface Chemistry on Hemolysis, Thrombogenicity, and Toxicity of Carbon Nanotube Doped Thermally Sprayed Hydroxyapatite Implants.

    Shankar, Deep / Jambagi, Sudhakar C / Gowda, Niranjan / Lakshmi, K S / Jayanthi, K J / Chaudhary, Vikash Kumar

    ACS biomaterials science & engineering

    2024  Volume 10, Issue 3, Page(s) 1403–1417

    Abstract: Assessing blood compatibility is crucial before in vivo procedures and is considered more reliable than many in vitro tests. This study examines the physiochemical properties and blood compatibility of bioactive powders ((0.5-2 wt % carbon nanotube (CNT)/ ...

    Abstract Assessing blood compatibility is crucial before in vivo procedures and is considered more reliable than many in vitro tests. This study examines the physiochemical properties and blood compatibility of bioactive powders ((0.5-2 wt % carbon nanotube (CNT)/alumina)-20 wt %)) produced through a heterocoagulation colloidal technique followed by ball milling with hydroxyapatite (HAp). The 1 wt % CNT composite demonstrated a surface charge ∼5 times higher than HAp at pH 7.4, with a value of -11 mV compared to -2 mV. This increase in electrostatic charge is desirable for achieving hemocompatibility, as evidenced by a range of blood compatibility assessments, including hemolysis, blood clotting, platelet adhesion, platelet activation, and coagulation assays (prothrombin time (PT) and activated partial thrombin time (aPTT)). The 1 wt % CNT composite exhibited hemolysis ranging from 2 to 7%, indicating its hemocompatibility. In the blood clot investigation, the absorbance values for 1-2 wt % CNT samples were 0.927 ± 0.038 and 1.184 ± 0.128, respectively, indicating their nonthrombogenicity. Additionally, the percentage of platelet adhered on the 1 wt % CNT sample (∼5.67%) showed a ∼2.5-fold decrement compared to the clinically used negative control, polypropylene (∼13.73%). The PT and aPTT experiments showed no difference in the coagulation time for CNT samples even at higher concentrations, unlike HAC2 (80 mg). In conclusion, the 1 wt % CNT sample was nontoxic to human blood, making it more hemocompatible, nonhemolytic, and nonthrombogenic than other samples. This reliable study reduces the need for additional in vitro and in vivo studies before clinical trials, saving time and cost.
    MeSH term(s) Humans ; Durapatite/chemistry ; Durapatite/pharmacology ; Nanotubes, Carbon/toxicity ; Nanotubes, Carbon/chemistry ; Hemolysis ; Blood Platelets ; Platelet Adhesiveness
    Chemical Substances Durapatite (91D9GV0Z28) ; Nanotubes, Carbon
    Language English
    Publishing date 2024-02-03
    Publishing country United States
    Document type Journal Article
    ISSN 2373-9878
    ISSN (online) 2373-9878
    DOI 10.1021/acsbiomaterials.3c00912
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: Deep Brain Stimulation for Holmes Tremors and Literature Review.

    Lavanya, Kunkala / Shankar, P Vijaya / Visvanathan, K / Sundar, S / Philohazeena, P

    Annals of Indian Academy of Neurology

    2023  Volume 26, Issue 3, Page(s) 296–299

    Language English
    Publishing date 2023-06-15
    Publishing country India
    Document type Journal Article
    ZDB-ID 2240174-X
    ISSN 1998-3549 ; 0972-2327
    ISSN (online) 1998-3549
    ISSN 0972-2327
    DOI 10.4103/aian.aian_720_22
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  7. Article ; Online: Effect of rheological models on pulsatile hemodynamics in a multiply afflicted descending human aortic network.

    Kumar, Sumit / Kumar, B V Rathish / Rai, S K / Shankar, Om

    Computer methods in biomechanics and biomedical engineering

    2023  Volume 27, Issue 1, Page(s) 116–143

    Abstract: In the cardiovascular diseased (CVD) conditions, it is essential to choose a suitable rheological model for capturing the correct physics behind the hemodynamic in the multiply afflicted diseased arterial network. This study investigates the effect of ... ...

    Abstract In the cardiovascular diseased (CVD) conditions, it is essential to choose a suitable rheological model for capturing the correct physics behind the hemodynamic in the multiply afflicted diseased arterial network. This study investigates the effect of blood rheology on hemodynamics in a blood vessel with abdominal aortic aneurysm (AAA) and right internal iliac stenosis (RIIAS). A model with AAA and RIIAS is reconstructed from a human subject's computed tomography (CT) data. Localized mesh generation and pulsatile inflow condition are considered. Non-Newtonian models such as the Power-law, Carreau, Cross, and Herschel Berkley models are used in simulations. The outcome from a validated computational model is compared with the Newtonian model to identify the suitable model for dealing with pathological complications under consideration. The capabilities and significance of various rheological models are also examined
    MeSH term(s) Humans ; Hemodynamics ; Arteries ; Aortic Aneurysm, Abdominal/diagnostic imaging ; Aorta ; Rheology ; Stress, Mechanical ; Models, Cardiovascular ; Blood Flow Velocity
    Language English
    Publishing date 2023-01-28
    Publishing country England
    Document type Journal Article
    ZDB-ID 2071764-7
    ISSN 1476-8259 ; 1025-5842
    ISSN (online) 1476-8259
    ISSN 1025-5842
    DOI 10.1080/10255842.2023.2170714
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  8. Article ; Online: Identification of EPZ004777 and FG2216 as inhibitors of TGF-β1 induced Treg cells by screening a library of epigenetic compounds.

    Premkumar, Kavitha / Shankar, Bhavani S

    Life sciences

    2022  Volume 301, Page(s) 120643

    Abstract: Aims: Regulatory T cells play an essential role in immune tolerance and homeostasis. Their long-term stability depends on epigenetic modifications and identification of small molecule modulators of Treg differentiation therefore has many applications. ... ...

    Abstract Aims: Regulatory T cells play an essential role in immune tolerance and homeostasis. Their long-term stability depends on epigenetic modifications and identification of small molecule modulators of Treg differentiation therefore has many applications. In this study, we performed a novel functional screen of an epigenetic compound library to identify compounds that can modulate generation of TGF-β1 induced T regulatory cells.
    Main methods: A screening strategy based on IFN-γ ELISA was designed to screen epigenetic compound library. Effect of hit compounds on Treg phenotype and function was assessed by RT-PCR, flow cytometry and suppression assays. TGF-β signalling proteins were assayed by western blotting. Chromatin Immunoprecipitation (ChIP) assay was used to assess epigenetic modifications at Foxp3 gene locus.
    Key findings: We screened 160 compounds to identify hits capable of reversing TGF-β induced inhibition of IFN-γ production in activated spleen cells and CD4
    Significance: EPZ004777 and FG-2216 have been identified as potent epigenetic modulators that can reverse TGF-β1 induced T regulatory cells and may be used to treat diverse immune disorders.
    MeSH term(s) Adenosine/analogs & derivatives ; Epigenesis, Genetic ; Forkhead Transcription Factors/genetics ; Forkhead Transcription Factors/metabolism ; Phenylurea Compounds ; T-Lymphocytes, Regulatory ; Transforming Growth Factor beta/metabolism ; Transforming Growth Factor beta1/metabolism
    Chemical Substances EPZ004777 ; Forkhead Transcription Factors ; Phenylurea Compounds ; Transforming Growth Factor beta ; Transforming Growth Factor beta1 ; Adenosine (K72T3FS567)
    Language English
    Publishing date 2022-05-13
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 3378-9
    ISSN 1879-0631 ; 0024-3205
    ISSN (online) 1879-0631
    ISSN 0024-3205
    DOI 10.1016/j.lfs.2022.120643
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  9. Article: Blunt Vascular Trauma in the Lower Extremity at a Major Trauma Centre: Salvage Rate and Complications.

    Barnard, Liam / Karimian, Sina / Foster, Patrick / Shankar, Venugopal K

    Strategies in trauma and limb reconstruction

    2023  Volume 18, Issue 2, Page(s) 87–93

    Abstract: ... Barnard L, Karimian S, Foster P, ...

    Abstract Introduction: Blunt trauma of the lower limb with vascular injury can cause devastating outcomes, including loss of limb and even loss of life. The primary aim of this study was to determine the limb salvage rate of patients sustaining such injuries when treated at Leeds General Infirmary (LGI) since becoming a Major Trauma Centre (MTC). The secondary aim was to establish patient complications.
    Methods: A retrospective analysis found that from 2013 to 2018, 30 patients, comprising of 32 injured limbs, were treated for blunt trauma to the lower limb associated with vascular injury.
    Results: Twenty-four patients were male and six were female. Their mean ages were 32 and 49, respectively. Three limbs were deemed unsalvageable and underwent primary amputation; of the remaining 29 potentially salvageable limbs, 27 (93%) were saved. Median ischaemic times for both amputees and salvaged limbs were under 6 hours. Of the 32 limbs, 27 (84%) were salvaged. All amputees had a MESS score ≥ 7, although not all patients with MESS ≥ 7 required amputation. Eleven limbs had prophylactic fasciotomies, three limbs developed compartment syndrome - all successfully treated and three contracted deep infections - one of which necessitated amputation. All but one patient survived their injuries and were discharged from the hospital.
    Conclusion: Attempted salvage of 27/29 (93%) limbs was successful and all but one patient survived these injuries when treated at an MTC. MESS scoring and ischaemic time are useful but not sole predictors of limb salvage. Complication rates are low but may be significant for their future implications.
    How to cite this article: Barnard L, Karimian S, Foster P,
    Language English
    Publishing date 2023-09-21
    Publishing country India
    Document type Journal Article
    ZDB-ID 2387508-2
    ISSN 1828-8928 ; 1828-8936
    ISSN (online) 1828-8928
    ISSN 1828-8936
    DOI 10.5005/jp-journals-10080-1588
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  10. Article ; Online: Bioinspired Garra Rufa Optimization-Assisted Deep Learning Model for Object Classification on Pedestrian Walkways.

    Yang, Eunmok / Shankar, K / Kumar, Sachin / Seo, Changho

    Biomimetics (Basel, Switzerland)

    2023  Volume 8, Issue 7

    Abstract: Object detection in pedestrian walkways is a crucial area of research that is widely used to improve the safety of pedestrians. It is not only challenging but also a tedious process to manually examine the labeling of abnormal actions, owing to its broad ...

    Abstract Object detection in pedestrian walkways is a crucial area of research that is widely used to improve the safety of pedestrians. It is not only challenging but also a tedious process to manually examine the labeling of abnormal actions, owing to its broad applications in video surveillance systems and the larger number of videos captured. Thus, an automatic surveillance system that identifies the anomalies has become indispensable for computer vision (CV) researcher workers. The recent advancements in deep learning (DL) algorithms have attracted wide attention for CV processes such as object detection and object classification based on supervised learning that requires labels. The current research study designs the bioinspired Garra rufa optimization-assisted deep learning model for object classification (BGRODL-OC) technique on pedestrian walkways. The objective of the BGRODL-OC technique is to recognize the presence of pedestrians and objects in the surveillance video. To achieve this goal, the BGRODL-OC technique primarily applies the GhostNet feature extractors to produce a set of feature vectors. In addition to this, the BGRODL-OC technique makes use of the GRO algorithm for hyperparameter tuning process. Finally, the object classification is performed via the attention-based long short-term memory (ALSTM) network. A wide range of experimental analysis was conducted to validate the superior performance of the BGRODL-OC technique. The experimental values established the superior performance of the BGRODL-OC algorithm over other existing approaches.
    Language English
    Publishing date 2023-11-11
    Publishing country Switzerland
    Document type Journal Article
    ISSN 2313-7673
    ISSN (online) 2313-7673
    DOI 10.3390/biomimetics8070541
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