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  1. Article: Assessment of microbial quality and health risks associated with traditional rice wine starter

    Keot, Jyotshna / Bora, Sudipta Sankar / Das Kangabam, Rajiv / Barooah, Madhumita

    3 Biotech

    2020  Volume 10, Issue 2, Page(s) 64

    Abstract: This study reports the microbial quality of ethnic starter ... ...

    Abstract This study reports the microbial quality of ethnic starter culture
    Language English
    Publishing date 2020-01-23
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 2600522-0
    ISSN 2190-5738 ; 2190-572X
    ISSN (online) 2190-5738
    ISSN 2190-572X
    DOI 10.1007/s13205-020-2059-z
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  2. Article ; Online: Anthropogenic activity-induced water quality degradation in the Loktak lake, a Ramsar site in the Indo-Burma biodiversity hotspot.

    Das Kangabam, Rajiv / Govindaraju, Munisamy

    Environmental technology

    2017  Volume 40, Issue 17, Page(s) 2232–2241

    Abstract: Wetland contributes to human well-being and poverty alleviation. The increase in human population leads to more demand for water and degradation of the water bodies around the globe, resulting in scarcity of water. The aim of the present study was to ... ...

    Abstract Wetland contributes to human well-being and poverty alleviation. The increase in human population leads to more demand for water and degradation of the water bodies around the globe, resulting in scarcity of water. The aim of the present study was to assess the impact of anthropogenic activity on the water quality of the Loktak lake. Water samples were collected seasonally, namely, monsoon, post monsoon, winter and pre-monsoon, during 2013-2014 from 10 sites. For each water sample, 20 physicochemical parameters were analysed using the American Public Health Association method. Furthermore, 11 significant parameter values were used to develop the water quality index (WQI). The result shows high concentrations of nitrite (5.45-11.83 mg/l) and nitrate (93.67-177.75 mg/l) in rivers which is beyond the permissible limit and higher compared to the Loktak. Highest turbidity was observed at Langthabal with 21 NTU, which is above the permissible limit. The WQI of the Loktak ranged from 64 to 77, while for rivers they ranged from 53 to 95, which indicates that the water is in a very poor state. The WQI values of rivers are higher compared with those of the lake, and it was identified that water from the rivers is a major reason for increase in pollution in the lake water. The study suggests the need for long-term monitoring of the lake aquatic ecosystem and identification of pollution sites for proper management of the lake water. The WQI is an important tool to enable the public and decision makers to evaluate the water quality of the Loktak lake.
    MeSH term(s) Biodiversity ; Ecosystem ; Environmental Monitoring ; Humans ; Lakes ; Rivers ; Water Pollutants, Chemical ; Water Quality
    Chemical Substances Water Pollutants, Chemical
    Language English
    Publishing date 2017-10-11
    Publishing country England
    Document type Journal Article
    ISSN 1479-487X
    ISSN (online) 1479-487X
    DOI 10.1080/09593330.2017.1378267
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Bacterial Operational Taxonomic Units Replace the Interactive Roles of Other Operational Taxonomic Units Under Strong Environmental Changes.

    Das Kangabam, Rajiv / Silla, Yumnam / Goswami, Gunajit / Barooah, Madhumita

    Current genomics

    2020  Volume 21, Issue 7, Page(s) 512–524

    Abstract: Background: Microorganisms are an important component of an aquatic ecosystem and play a critical role in the biogeochemical cycle which influences the circulation of the materials and maintains the balance in aquatic ecosystems.: Objective: The ... ...

    Abstract Background: Microorganisms are an important component of an aquatic ecosystem and play a critical role in the biogeochemical cycle which influences the circulation of the materials and maintains the balance in aquatic ecosystems.
    Objective: The seasonal variation along with the impact of anthropogenic activities, water quality, bacterial community composition and dynamics in the Loktak Lake, the largest freshwater lake of North East India, located in the Indo-Burma hotspot region was assessed during post-monsoon and winter season through metagenome analysis.
    Methods: Five soil samples were collected during Post-monsoon and winter season from the Loktak Lake that had undergone different anthropogenic impacts. The metagenomic DNA of the soil samples was extracted using commercial metagenomic DNA extraction kits following the manufacturer's instruction. The extracted DNA was used to prepare the NGS library and sequenced in the Illumina MiSeq platform.
    Results: Metagenomics analysis reveals Proteobacteria as the predominant community followed by Acidobacteria and Actinobacteria. The presence of these groups of bacteria indicates nitrogen fixation, oxidation of iron, sulfur, methane, and source of novel antibiotic candidates. The bacterial members belonging to different groups were involved in various biogeochemical processes, including fixation of carbon and nitrogen, producing streptomycin, gramicidin and perform oxidation of sulfur, sulfide, ammonia, and methane.
    Conclusion: The outcome of this study provides a valuable dataset representing a seasonal profile across various land use and analysis, targeting at establishing an understanding of how the microbial communities vary across the land use and the role of keystone taxa. The findings may contribute to searches for microbial bio-indicators as biodiversity markers for improving the aquatic ecosystem of the Loktak Lake.
    Language English
    Publishing date 2020-11-19
    Publishing country United Arab Emirates
    Document type Journal Article
    ZDB-ID 2033677-9
    ISSN 1875-5488 ; 1389-2029
    ISSN (online) 1875-5488
    ISSN 1389-2029
    DOI 10.2174/1389202921999200716104355
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Anthropogenic activity-induced water quality degradation in the Loktak lake, a Ramsar site in the Indo-Burma biodiversity hotspot

    Das Kangabam, Rajiv / Govindaraju, Munisamy

    Environmental technology. 2019 July 29, v. 40, no. 17

    2019  

    Abstract: Wetland contributes to human well-being and poverty alleviation. The increase in human population leads to more demand for water and degradation of the water bodies around the globe, resulting in scarcity of water. The aim of the present study was to ... ...

    Abstract Wetland contributes to human well-being and poverty alleviation. The increase in human population leads to more demand for water and degradation of the water bodies around the globe, resulting in scarcity of water. The aim of the present study was to assess the impact of anthropogenic activity on the water quality of the Loktak lake. Water samples were collected seasonally, namely, monsoon, post monsoon, winter and pre-monsoon, during 2013–2014 from 10 sites. For each water sample, 20 physicochemical parameters were analysed using the American Public Health Association method. Furthermore, 11 significant parameter values were used to develop the water quality index (WQI). The result shows high concentrations of nitrite (5.45–11.83 mg/l) and nitrate (93.67–177.75 mg/l) in rivers which is beyond the permissible limit and higher compared to the Loktak. Highest turbidity was observed at Langthabal with 21 NTU, which is above the permissible limit. The WQI of the Loktak ranged from 64 to 77, while for rivers they ranged from 53 to 95, which indicates that the water is in a very poor state. The WQI values of rivers are higher compared with those of the lake, and it was identified that water from the rivers is a major reason for increase in pollution in the lake water. The study suggests the need for long-term monitoring of the lake aquatic ecosystem and identification of pollution sites for proper management of the lake water. The WQI is an important tool to enable the public and decision makers to evaluate the water quality of the Loktak lake.
    Keywords anthropogenic activities ; aquatic ecosystems ; biodiversity ; lakes ; monitoring ; monsoon season ; nitrates ; nitrites ; physicochemical properties ; rivers ; surface water ; turbidity ; water pollution ; water quality ; wetlands ; winter
    Language English
    Dates of publication 2019-0729
    Size p. 2232-2241.
    Publishing place Taylor & Francis
    Document type Article
    ISSN 1479-487X
    DOI 10.1080/09593330.2017.1378267
    Database NAL-Catalogue (AGRICOLA)

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  5. Article: Assessment of land use land cover changes in Loktak Lake in Indo-Burma Biodiversity Hotspot using geospatial techniques

    Das Kangabam, Rajiv / Govindaraju, Muniswamy / Selvaraj, Muthu

    National Authority for Remote Sensing and Space Sciences The Egyptian Journal of Remote Sensing and Space Sciences (Online). 2019 Aug., v. 22, no. 2

    2019  

    Abstract: Increased in human anthropogenic activities resulted in large degradation of wetlands affecting the biotic and abiotic components of the freshwater ecosystems. The Loktak Lake of Manipur in the Indo-Burma Biodiversity region has been degraded and ... ...

    Abstract Increased in human anthropogenic activities resulted in large degradation of wetlands affecting the biotic and abiotic components of the freshwater ecosystems. The Loktak Lake of Manipur in the Indo-Burma Biodiversity region has been degraded and threatened due to increase in population and the demand for more resources. The aim of the present study was to assess the changes in land use pattern in Loktak Lake during the last 38 years using digital change detection approaches. Spatial technique of land uses detection using multi-temporal satellite data followed by remote sensing techniques were used to assess the land cover changes. Maximum likelihood algorithm was employed to analyze the data collected from the Earth Resource Development Assessment System imagine in order to detect the change in land cover. Further, five types of land use pattern viz. open water bodies, agricultural area, Phumdis with thick vegetation, Phumdis with thin vegetation and settlement were studied. The results showed an alternation in the land use profile of the Loktak Lake. The present finding indicates that overall increased in open water bodies, agricultural area and settlement by 10.94%, 10.26% and 2.23% respectively while Phumdis with thick and Phumdis with thin vegetation have decreased by 3.48% and 28.89%. Changes in land use pattern were found to be affecting the fragile ecosystem of the Loktak Lake and posed a serious threat to the aquatic ecosystem. The study identified the need for proper land use planning and implementation of Manipur Loktak Lake Act 2006 for sustainable management of the lake.
    Keywords algorithms ; anthropogenic activities ; biodiversity ; data collection ; freshwater ecosystems ; lakes ; land cover ; land use and land cover maps ; land use planning ; remote sensing ; resource management ; statistical analysis ; surface water ; vegetation ; wetlands ; India
    Language English
    Dates of publication 2019-08
    Size p. 137-143.
    Publishing place Elsevier B.V.
    Document type Article
    ISSN 1110-9823
    DOI 10.1016/j.ejrs.2018.04.005
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  6. Article ; Online: Spatio-temporal analysis of floating islands and their behavioral changes in Loktak Lake with respect to biodiversity using remote sensing and GIS techniques.

    Kangabam, Rajiv Das / Selvaraj, Muthu / Govindaraju, Munisamy

    Environmental monitoring and assessment

    2018  Volume 190, Issue 3, Page(s) 118

    Abstract: The presence of floating islands is a unique characteristic of Loktak Lake. Floating islands play a significant role in ecosystem services and ecological processes and functioning. Rapid urbanization, industrialization, and a demand for more resources ... ...

    Abstract The presence of floating islands is a unique characteristic of Loktak Lake. Floating islands play a significant role in ecosystem services and ecological processes and functioning. Rapid urbanization, industrialization, and a demand for more resources have led to changes in the landscape patterns at Loktak Lake in past three decades, thereby degrading and threatening the fragile ecosystem. The aim of the present study is to assess the changes in land use practices of the Phumdis by analyzing data from the past 38 years with remote sensing techniques. Landsat images from 1977, 1988, 1999 and an Indian remote sensing image from 2015 were used to assess the land use/land cover changes. The methodology adopted is a supervised classification using the maximum likelihood technique in ERDAS software. Five land used classes were employed: open water bodies, agricultural areas, Phumdis with thick vegetation, and Phumdis with thin vegetation and settlements. The results indicate that the highest loss of land used class was in Phumdis with thin vegetation (49.38 km
    MeSH term(s) Agriculture ; Biodiversity ; Conservation of Natural Resources ; Ecosystem ; Environmental Monitoring/methods ; Geographic Information Systems ; Islands ; Lakes/chemistry ; Myanmar ; Remote Sensing Technology ; Spatio-Temporal Analysis ; Urbanization
    Language English
    Publishing date 2018-02-06
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 782621-7
    ISSN 1573-2959 ; 0167-6369
    ISSN (online) 1573-2959
    ISSN 0167-6369
    DOI 10.1007/s10661-018-6485-x
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  7. Article: Spatio-temporal analysis of floating islands and their behavioral changes in Loktak Lake with respect to biodiversity using remote sensing and GIS techniques

    Kangabam, Rajiv Das / Munisamy Govindaraju / Muthu Selvaraj

    Environmental monitoring and assessment. 2018 Mar., v. 190, no. 3

    2018  

    Abstract: The presence of floating islands is a unique characteristic of Loktak Lake. Floating islands play a significant role in ecosystem services and ecological processes and functioning. Rapid urbanization, industrialization, and a demand for more resources ... ...

    Abstract The presence of floating islands is a unique characteristic of Loktak Lake. Floating islands play a significant role in ecosystem services and ecological processes and functioning. Rapid urbanization, industrialization, and a demand for more resources have led to changes in the landscape patterns at Loktak Lake in past three decades, thereby degrading and threatening the fragile ecosystem. The aim of the present study is to assess the changes in land use practices of the Phumdis by analyzing data from the past 38 years with remote sensing techniques. Landsat images from 1977, 1988, 1999 and an Indian remote sensing image from 2015 were used to assess the land use/land cover changes. The methodology adopted is a supervised classification using the maximum likelihood technique in ERDAS software. Five land used classes were employed: open water bodies, agricultural areas, Phumdis with thick vegetation, and Phumdis with thin vegetation and settlements. The results indicate that the highest loss of land used class was in Phumdis with thin vegetation (49.38 km2) followed by Phumdis with thick vegetation (8.59 km2), while there was an overall increase in open water bodies (27.00 km2), agricultural areas (25.33 km2), and settlement (5.75 km2). Our study highlights the loss of floating islands from the Loktak as a major concern that will lead to the destruction of the only “floating national park in the world.” There is a high probability of extinction of the Sangai, an important keystone species found in the Indo-Burma biodiversity hotspot, if floating islands are not protected through sustainable development.
    Keywords agricultural land ; behavior change ; biodiversity ; computer software ; ecosystem services ; ecosystems ; extinction ; geographic information systems ; industrialization ; islands ; keystone species ; lakes ; land cover ; land use ; Landsat ; landscapes ; national parks ; probability ; remote sensing ; statistical analysis ; surface water ; sustainable development ; urbanization ; vegetation
    Language English
    Dates of publication 2018-03
    Size p. 118.
    Publishing place Springer International Publishing
    Document type Article
    ZDB-ID 782621-7
    ISSN 1573-2959 ; 0167-6369
    ISSN (online) 1573-2959
    ISSN 0167-6369
    DOI 10.1007/s10661-018-6485-x
    Database NAL-Catalogue (AGRICOLA)

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  8. Article ; Online: Next-generation computational tools and resources for coronavirus research: From detection to vaccine discovery.

    Kangabam, Rajiv / Sahoo, Susrita / Ghosh, Arpan / Roy, Riya / Silla, Yumnam / Misra, Namrata / Suar, Mrutyunjay

    Computers in biology and medicine

    2020  Volume 128, Page(s) 104158

    Abstract: The COVID-19 pandemic has affected 215 countries and territories around the world with 60,187,347 coronavirus cases and 17,125,719 currently infected patients confirmed as of the November 25, 2020. Currently, many countries are working on developing new ... ...

    Abstract The COVID-19 pandemic has affected 215 countries and territories around the world with 60,187,347 coronavirus cases and 17,125,719 currently infected patients confirmed as of the November 25, 2020. Currently, many countries are working on developing new vaccines and therapeutic drugs for this novel virus strain, and a few of them are in different phases of clinical trials. The advancement in high-throughput sequence technologies, along with the application of bioinformatics, offers invaluable knowledge on genomic characterization and molecular pathogenesis of coronaviruses. Recent multi-disciplinary studies using bioinformatics methods like sequence-similarity, phylogenomic, and computational structural biology have provided an in-depth understanding of the molecular and biochemical basis of infection, atomic-level recognition of the viral-host receptor interaction, functional annotation of important viral proteins, and evolutionary divergence across different strains. Additionally, various modern immunoinformatic approaches are also being used to target the most promiscuous antigenic epitopes from the SARS-CoV-2 proteome for accelerating the vaccine development process. In this review, we summarize various important computational tools and databases available for systematic sequence-structural study on coronaviruses. The features of these public resources have been comprehensively discussed, which may help experimental biologists with predictive insights useful for ongoing research efforts to find therapeutics against the infectious COVID-19 disease.
    MeSH term(s) COVID-19/epidemiology ; COVID-19/genetics ; Computational Biology ; Computer Simulation ; Humans ; Pandemics ; Proteome/genetics ; SARS-CoV-2/genetics
    Chemical Substances Proteome
    Language English
    Publishing date 2020-12-01
    Publishing country United States
    Document type Journal Article ; Review
    ZDB-ID 127557-4
    ISSN 1879-0534 ; 0010-4825
    ISSN (online) 1879-0534
    ISSN 0010-4825
    DOI 10.1016/j.compbiomed.2020.104158
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  9. Article: Assessment of microbial quality and health risks associated with traditional rice wine starter Xaj-pitha of Assam, India: a step towards defined and controlled fermentation

    Keot, Jyotshna / Bora, Sudipta Sankar / Das Kangabam, Rajiv / Barooah, Madhumita

    3 Biotech. 2020 Feb., v. 10, no. 2

    2020  

    Abstract: This study reports the microbial quality of ethnic starter culture Xaj-pitha used for rice wine fermentation in Assam. Here, we collected 60 Xaj-pitha samples belonging to Ahom community of the state and enumerated the microorganisms using spread plate ... ...

    Abstract This study reports the microbial quality of ethnic starter culture Xaj-pitha used for rice wine fermentation in Assam. Here, we collected 60 Xaj-pitha samples belonging to Ahom community of the state and enumerated the microorganisms using spread plate technique. Illumina-based whole genome shotgun sequencing detected the presence of microbial contaminants like Acidovorax, Herbaspirillum, Methylobacterium, Pantoea, Pseudomonas, Stenotrophomonas, Staphylococcus, Micrococcus, Acinetobacter, etc. Presence of major health hazards associated with spontaneous rice wine fermentation necessitated method optimization through the development of a defined mixed starter culture. For this, functionally important α-amylase producers viz., Penicillium sp. ABTSJ23, Rhizopus oryzae ABTSJ63, Mucor guilliermondii ABTSJ72 and Amylomyces rouxii ABTSJ82 and eight yeasts viz., Saccharomyces cerevisiae ABTY1J, ABTY1S, ADJ5 & ADJ1, Wickerhamomyces anomalus ADJ2, Saccharomycopsis malanga ADJ3, Saccharomycopsis fibuligera ADJ4 and Saccharomycopsis malanga ADJ6 were retrieved using appropriate media. All the mould cultures tested negative for aflotoxins production. Among the yeasts, Saccharomyces cerevisiae ABTY1S and ADJ1 decarboxylated lysine HCl and tyramine HCl, respectively, indicating their biogenic amine production ability. For defined mixed starter culture, Amylomyces rouxii ABT82 with α-amylase (5.92 U/ml) and glucoamylase (7.50 U/ml) activities was selected as fungal partner; while Saccharomycopsis fibuligera ADJ4 and Saccharomyces cerevisiae ABT-Y1J with high ethanol production (up to 10.11% and 9.88% v/v, respectively) were selected as yeast partners. The mixed culture was able to produce high amount of glucose, ethanol and liquid (glucose 10.91% w/v; ethanol 7.5% w/v; liquid 51.0% w/v). Therefore, this study demonstrated the efficiency of mixed starter cultures for safe and controlled rice wine production.
    Keywords Acidovorax ; Acinetobacter ; Herbaspirillum ; Methylobacterium ; Micrococcus ; Mucor ; Pantoea ; Penicillium ; Pseudomonas ; Rhizopus oryzae ; Saccharomyces cerevisiae ; Saccharomycopsis fibuligera ; Staphylococcus ; Stenotrophomonas ; Wickerhamomyces anomalus ; alpha-amylase ; ethanol ; ethanol production ; fermentation ; genome ; glucan 1,4-alpha-glucosidase ; glucose ; health hazards ; liquids ; lysine ; microbial contamination ; microbiological quality ; mixed culture ; multiple strain starters ; rice wines ; risk ; sequence analysis ; tyramine ; winemaking ; yeasts ; India
    Language English
    Dates of publication 2020-02
    Size p. 64.
    Publishing place Springer International Publishing
    Document type Article
    ZDB-ID 2600522-0
    ISSN 2190-5738 ; 2190-572X
    ISSN (online) 2190-5738
    ISSN 2190-572X
    DOI 10.1007/s13205-020-2059-z
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  10. Article: Development of a water quality index (WQI) for the Loktak Lake in India

    Das Kangabam, Rajiv / Munisamy Govindaraju / Sarojini Devi Bhoominathan / Suganthi Kanagaraj

    Appl Water Sci. 2017 Oct., v. 7, no. 6

    2017  

    Abstract: The present work was carried out to assess a water quality index (WQI) of the Loktak Lake, an important wetland which has been under pressure due to the increasing anthropogenic activities. Physicochemical parameters like temperature (Tem), potential ... ...

    Abstract The present work was carried out to assess a water quality index (WQI) of the Loktak Lake, an important wetland which has been under pressure due to the increasing anthropogenic activities. Physicochemical parameters like temperature (Tem), potential hydrogen (pH), electrical conductivity (EC), turbidity (T), dissolved oxygen (DO), total hardness (TH), calcium (Ca), chloride (Cl), fluoride (F), sulphate ([Formula: see text]), magnesium (Mg), phosphate ([Formula: see text]), sodium (Na), potassium (K), nitrite (NO₂), nitrate (NO₃), total dissolved solids (TDS), total carbon (TC), biochemical oxygen demand (BOD), and chemical oxygen demand (COD) were analyzed using standard procedures. The values obtained were compared with the guidelines for drinking purpose suggested by the World Health Organization and Bureau of Indian Standard. The result shows the higher concentration of nitrite in all the location which is beyond the permissible limit. Eleven parameters were selected to derive the WQI for the estimation of water potential for five sampling sites. A relative weight was assigned to each parameter range from 1.46 to 4.09 based on its importance. The WQI values range from 64 to 77 indicating that the Loktak Lake water is not fit for drinking, including both human and animals, even though the people living inside the Lake are using it for drinking purposes. The implementation of WQI is necessary for proper management of the Loktak Lake and it will be a very helpful tool for the public and decision makers to evaluate the water quality of the Loktak Lake for sustainable management.
    Keywords anthropogenic activities ; biochemical oxygen demand ; calcium ; carbon ; chemical oxygen demand ; chlorides ; decision making ; drinking ; electrical conductivity ; fluorides ; guidelines ; humans ; hydrogen ; lakes ; magnesium ; nitrates ; nitrites ; nitrogen dioxide ; oxygen ; people ; pH ; phosphates ; potassium ; sodium ; sulfates ; temperature ; total dissolved solids ; turbidity ; water hardness ; water potential ; wetlands ; World Health Organization ; India
    Language English
    Dates of publication 2017-10
    Size p. 2907-2918.
    Publishing place Springer Berlin Heidelberg
    Document type Article
    ZDB-ID 2594789-8
    ISSN 2190-5495 ; 2190-5487
    ISSN (online) 2190-5495
    ISSN 2190-5487
    DOI 10.1007/s13201-017-0579-4
    Database NAL-Catalogue (AGRICOLA)

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