LIVIVO - The Search Portal for Life Sciences

zur deutschen Oberfläche wechseln
Advanced search

Search results

Result 1 - 10 of total 42

Search options

  1. Article ; Online: Genetic insights into immune mechanisms of Alzheimer's and Parkinson's disease.

    Nott, Alexi / Holtman, Inge R

    Frontiers in immunology

    2023  Volume 14, Page(s) 1168539

    Abstract: Microglia, the macrophages of the brain, are vital for brain homeostasis and have been implicated in a broad range of brain disorders. Neuroinflammation has gained traction as a possible therapeutic target for neurodegeneration, however, the precise ... ...

    Abstract Microglia, the macrophages of the brain, are vital for brain homeostasis and have been implicated in a broad range of brain disorders. Neuroinflammation has gained traction as a possible therapeutic target for neurodegeneration, however, the precise function of microglia in specific neurodegenerative disorders is an ongoing area of research. Genetic studies offer valuable insights into understanding causality, rather than merely observing a correlation. Genome-wide association studies (GWAS) have identified many genetic loci that are linked to susceptibility to neurodegenerative disorders. (Post)-GWAS studies have determined that microglia likely play an important role in the development of Alzheimer's disease (AD) and Parkinson's disease (PD). The process of understanding how individual GWAS risk loci affect microglia function and mediate susceptibility is complex. A rapidly growing number of publications with genomic datasets and computational tools have formulated new hypotheses that guide the biological interpretation of AD and PD genetic risk. In this review, we discuss the key concepts and challenges in the post-GWAS interpretation of AD and PD GWAS risk alleles. Post-GWAS challenges include the identification of target cell (sub)type(s), causal variants, and target genes. Crucially, the prediction of GWAS-identified disease-risk cell types, variants and genes require validation and functional testing to understand the biological consequences within the pathology of the disorders. Many AD and PD risk genes are highly pleiotropic and perform multiple important functions that might not be equally relevant for the mechanisms by which GWAS risk alleles exert their effect(s). Ultimately, many GWAS risk alleles exert their effect by changing microglia function, thereby altering the pathophysiology of these disorders, and hence, we believe that modelling this context is crucial for a deepened understanding of these disorders.
    MeSH term(s) Humans ; Parkinson Disease/genetics ; Alzheimer Disease/genetics ; Alzheimer Disease/metabolism ; Genetic Predisposition to Disease ; Genome-Wide Association Study ; Neurodegenerative Diseases/genetics
    Language English
    Publishing date 2023-06-08
    Publishing country Switzerland
    Document type Journal Article ; Review ; Research Support, Non-U.S. Gov't
    ZDB-ID 2606827-8
    ISSN 1664-3224 ; 1664-3224
    ISSN (online) 1664-3224
    ISSN 1664-3224
    DOI 10.3389/fimmu.2023.1168539
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  2. Article ; Online: Immune memory in the brain.

    Nott, Alexi / Glass, Christopher K

    Nature

    2018  Volume 556, Issue 7701, Page(s) 312–313

    MeSH term(s) Brain ; Immunologic Memory ; Memory ; Memory Disorders
    Language English
    Publishing date 2018-03-21
    Publishing country England
    Document type News ; Comment
    ZDB-ID 120714-3
    ISSN 1476-4687 ; 0028-0836
    ISSN (online) 1476-4687
    ISSN 0028-0836
    DOI 10.1038/d41586-018-03800-6
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  3. Article ; Online: Nuclei isolation of multiple brain cell types for omics interrogation.

    Nott, Alexi / Schlachetzki, Johannes C M / Fixsen, Bethany R / Glass, Christopher K

    Nature protocols

    2021  Volume 16, Issue 3, Page(s) 1629–1646

    Abstract: We present a nuclei isolation protocol for genomic and epigenomic interrogation of multiple cell type populations in the human and rodent brain. The nuclei isolation protocol allows cell type-specific profiling of neurons, microglia, oligodendrocytes, ... ...

    Abstract We present a nuclei isolation protocol for genomic and epigenomic interrogation of multiple cell type populations in the human and rodent brain. The nuclei isolation protocol allows cell type-specific profiling of neurons, microglia, oligodendrocytes, and astrocytes, being compatible with fresh and frozen samples obtained from either resected or postmortem brain tissue. This 2-day procedure consists of tissue homogenization with fixation, nuclei extraction, and antibody staining followed by fluorescence-activated nuclei sorting (FANS) and does not require specialized skillsets. Cell type-specific nuclei populations can be used for downstream omic-scale sequencing applications with an emphasis on epigenomic interrogation such as histone modifications, transcription factor binding, chromatin accessibility, and chromosome architecture. The nuclei isolation protocol enables translational examination of archived healthy and diseased brain specimens through utilization of existing medical biorepositories.
    MeSH term(s) Animals ; Astrocytes/metabolism ; Brain/metabolism ; Brain Chemistry/physiology ; Cell Nucleus/chemistry ; Cell Nucleus/metabolism ; Chromatin/metabolism ; Epigenomics/methods ; Flow Cytometry/methods ; Genomics/methods ; Humans ; Neurons/metabolism ; Protein Processing, Post-Translational/physiology
    Chemical Substances Chromatin
    Language English
    Publishing date 2021-01-25
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 2244966-8
    ISSN 1750-2799 ; 1754-2189
    ISSN (online) 1750-2799
    ISSN 1754-2189
    DOI 10.1038/s41596-020-00472-3
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  4. Article ; Online: The Top3β way to untangle RNA.

    Nott, Alexi / Tsai, Li-Huei

    Nature neuroscience

    2013  Volume 16, Issue 9, Page(s) 1163–1164

    MeSH term(s) Abnormalities, Multiple/genetics ; Animals ; Chromosome Deletion ; Chromosomes, Human, Pair 22/genetics ; Cognition Disorders/genetics ; DNA Topoisomerases, Type I/genetics ; DNA Topoisomerases, Type I/metabolism ; DiGeorge Syndrome/genetics ; Female ; Fragile X Mental Retardation Protein/metabolism ; Humans ; Male ; Neuromuscular Junction/genetics ; Schizophrenia/genetics ; Sequence Deletion/genetics
    Chemical Substances Fragile X Mental Retardation Protein (139135-51-6) ; DNA Topoisomerases, Type I (EC 5.99.1.2)
    Language English
    Publishing date 2013-08-25
    Publishing country United States
    Document type News ; Comment
    ZDB-ID 1420596-8
    ISSN 1546-1726 ; 1097-6256
    ISSN (online) 1546-1726
    ISSN 1097-6256
    DOI 10.1038/nn.3506
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  5. Article ; Online: Label-free three-photon imaging of intact human cerebral organoids for tracking early events in brain development and deficits in Rett syndrome.

    Yildirim, Murat / Delepine, Chloe / Feldman, Danielle / Pham, Vincent A / Chou, Stephanie / Ip, Jacque / Nott, Alexi / Tsai, Li-Huei / Ming, Guo-Li / So, Peter T C / Sur, Mriganka

    eLife

    2022  Volume 11

    Abstract: Human cerebral organoids are unique in their development of progenitor-rich zones akin to ventricular zones from which neuronal progenitors differentiate and migrate radially. Analyses of cerebral organoids thus far have been performed in sectioned ... ...

    Abstract Human cerebral organoids are unique in their development of progenitor-rich zones akin to ventricular zones from which neuronal progenitors differentiate and migrate radially. Analyses of cerebral organoids thus far have been performed in sectioned tissue or in superficial layers due to their high scattering properties. Here, we demonstrate label-free three-photon imaging of whole, uncleared intact organoids (~2 mm depth) to assess early events of early human brain development. Optimizing a custom-made three-photon microscope to image intact cerebral organoids generated from Rett Syndrome patients, we show defects in the ventricular zone volumetric structure of mutant organoids compared to isogenic control organoids. Long-term imaging live organoids reveals that shorter migration distances and slower migration speeds of mutant radially migrating neurons are associated with more tortuous trajectories. Our label-free imaging system constitutes a particularly useful platform for tracking normal and abnormal development in individual organoids, as well as for screening therapeutic molecules via intact organoid imaging.
    MeSH term(s) Brain/diagnostic imaging ; Humans ; Neurons ; Organoids/physiology ; Rett Syndrome/diagnostic imaging ; Rett Syndrome/genetics
    Language English
    Publishing date 2022-07-29
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S. ; Research Support, N.I.H., Extramural
    ZDB-ID 2687154-3
    ISSN 2050-084X ; 2050-084X
    ISSN (online) 2050-084X
    ISSN 2050-084X
    DOI 10.7554/eLife.78079
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  6. Article ; Online: Artificial intelligence for neurodegenerative experimental models.

    Marzi, Sarah J / Schilder, Brian M / Nott, Alexi / Frigerio, Carlo Sala / Willaime-Morawek, Sandrine / Bucholc, Magda / Hanger, Diane P / James, Charlotte / Lewis, Patrick A / Lourida, Ilianna / Noble, Wendy / Rodriguez-Algarra, Francisco / Sharif, Jalil-Ahmad / Tsalenchuk, Maria / Winchester, Laura M / Yaman, Ümran / Yao, Zhi / Ranson, Janice M / Llewellyn, David J

    Alzheimer's & dementia : the journal of the Alzheimer's Association

    2023  Volume 19, Issue 12, Page(s) 5970–5987

    Abstract: Introduction: Experimental models are essential tools in neurodegenerative disease research. However, the translation of insights and drugs discovered in model systems has proven immensely challenging, marred by high failure rates in human clinical ... ...

    Abstract Introduction: Experimental models are essential tools in neurodegenerative disease research. However, the translation of insights and drugs discovered in model systems has proven immensely challenging, marred by high failure rates in human clinical trials.
    Methods: Here we review the application of artificial intelligence (AI) and machine learning (ML) in experimental medicine for dementia research.
    Results: Considering the specific challenges of reproducibility and translation between other species or model systems and human biology in preclinical dementia research, we highlight best practices and resources that can be leveraged to quantify and evaluate translatability. We then evaluate how AI and ML approaches could be applied to enhance both cross-model reproducibility and translation to human biology, while sustaining biological interpretability.
    Discussion: AI and ML approaches in experimental medicine remain in their infancy. However, they have great potential to strengthen preclinical research and translation if based upon adequate, robust, and reproducible experimental data.
    Highlights: There are increasing applications of AI in experimental medicine. We identified issues in reproducibility, cross-species translation, and data curation in the field. Our review highlights data resources and AI approaches as solutions. Multi-omics analysis with AI offers exciting future possibilities in drug discovery.
    MeSH term(s) Humans ; Artificial Intelligence ; Neurodegenerative Diseases ; Reproducibility of Results ; Machine Learning ; Dementia
    Language English
    Publishing date 2023-09-28
    Publishing country United States
    Document type Journal Article ; Review
    ZDB-ID 2211627-8
    ISSN 1552-5279 ; 1552-5260
    ISSN (online) 1552-5279
    ISSN 1552-5260
    DOI 10.1002/alz.13479
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  7. Article: HDAC2 expression in parvalbumin interneurons regulates synaptic plasticity in the mouse visual cortex.

    Nott, Alexi / Cho, Sukhee / Seo, Jinsoo / Tsai, Li-Huei

    Neuroepigenetics

    2015  Volume 1, Page(s) 34–40

    Abstract: An experience-dependent postnatal increase in GABAergic inhibition in the visual cortex is important for the closure of a critical period of enhanced synaptic plasticity. Although maturation of the subclass of Parvalbumin (Pv)-expressing GABAergic ... ...

    Abstract An experience-dependent postnatal increase in GABAergic inhibition in the visual cortex is important for the closure of a critical period of enhanced synaptic plasticity. Although maturation of the subclass of Parvalbumin (Pv)-expressing GABAergic interneurons is known to contribute to critical period closure, the role of epigenetics on cortical inhibition and synaptic plasticity has not been explored. The transcription regulator, histone deacetylase 2 (HDAC2), has been shown to modulate synaptic plasticity and learning processes in hippocampal excitatory neurons. We found that genetic deletion of HDAC2 specifically from Pv-interneurons reduces inhibitory input in the visual cortex of adult mice, and coincides with enhanced long-term depression (LTD) that is more typical of young mice. These findings show that HDAC2 loss in Pv-interneurons leads to a delayed closure of the critical period in the visual cortex and supports the hypothesis that HDAC2 is a key negative regulator of synaptic plasticity in the adult brain.
    Language English
    Publishing date 2015-02-02
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2835361-4
    ISSN 2214-7845
    ISSN 2214-7845
    DOI 10.1016/j.nepig.2014.10.005
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  8. Article ; Online: Nitric oxide-mediated epigenetic mechanisms in developing neurons.

    Nott, Alexi / Riccio, Antonella

    Cell cycle (Georgetown, Tex.)

    2009  Volume 8, Issue 5, Page(s) 725–730

    Abstract: Epigenetic changes of chromatin are increasingly recognized as key modifications that dictate the differentiation state of cells during development. Within the central nervous system, extracellular cues induce chromatin remodelling events that are ... ...

    Abstract Epigenetic changes of chromatin are increasingly recognized as key modifications that dictate the differentiation state of cells during development. Within the central nervous system, extracellular cues induce chromatin remodelling events that are essential for neuronal progenitor proliferation, cell differentiation and, later, plasticity. In this review, we discuss recent studies that show how extracellular and intranuclear signals influence chromatin remodelling and neuron-specific gene expression. The gaseous molecule Nitric Oxide (NO) has recently emerged as a new key player that mediates the epigenetic changes associated with cell cycle arrest and differentiation in neurons. Histone deacetylases (HDACs) are the first identified intranuclear targets of NO, but, due to its highly diffusible nature, it is likely that many other nuclear factors are directly regulated by NO.
    MeSH term(s) Cell Differentiation ; Chromatin/metabolism ; Epigenesis, Genetic ; Gene Expression Regulation, Developmental ; Histone Deacetylases/genetics ; Histone Deacetylases/metabolism ; Neurons/enzymology ; Neurons/metabolism ; Nitric Oxide/metabolism ; Nitric Oxide Synthase/genetics ; Nitric Oxide Synthase/metabolism ; Signal Transduction
    Chemical Substances Chromatin ; Nitric Oxide (31C4KY9ESH) ; Nitric Oxide Synthase (EC 1.14.13.39) ; Histone Deacetylases (EC 3.5.1.98)
    Language English
    Publishing date 2009-03-08
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 2146183-1
    ISSN 1551-4005 ; 1538-4101 ; 1554-8627
    ISSN (online) 1551-4005
    ISSN 1538-4101 ; 1554-8627
    DOI 10.4161/cc.8.5.7805
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  9. Article ; Online: Phosphoproteomics identifies microglial Siglec-F inflammatory response during neurodegeneration.

    Morshed, Nader / Ralvenius, William T / Nott, Alexi / Watson, L Ashley / Rodriguez, Felicia H / Akay, Leyla A / Joughin, Brian A / Pao, Ping-Chieh / Penney, Jay / LaRocque, Lauren / Mastroeni, Diego / Tsai, Li-Huei / White, Forest M

    Molecular systems biology

    2020  Volume 16, Issue 12, Page(s) e9819

    Abstract: Alzheimer's disease (AD) is characterized by the appearance of amyloid-β plaques, neurofibrillary tangles, and inflammation in brain regions involved in memory. Using mass spectrometry, we have quantified the phosphoproteome of the CK-p25, 5XFAD, and Tau ...

    Abstract Alzheimer's disease (AD) is characterized by the appearance of amyloid-β plaques, neurofibrillary tangles, and inflammation in brain regions involved in memory. Using mass spectrometry, we have quantified the phosphoproteome of the CK-p25, 5XFAD, and Tau P301S mouse models of neurodegeneration. We identified a shared response involving Siglec-F which was upregulated on a subset of reactive microglia. The human paralog Siglec-8 was also upregulated on microglia in AD. Siglec-F and Siglec-8 were upregulated following microglial activation with interferon gamma (IFNγ) in BV-2 cell line and human stem cell-derived microglia models. Siglec-F overexpression activates an endocytic and pyroptotic inflammatory response in BV-2 cells, dependent on its sialic acid substrates and immunoreceptor tyrosine-based inhibition motif (ITIM) phosphorylation sites. Related human Siglecs induced a similar response in BV-2 cells. Collectively, our results point to an important role for mouse Siglec-F and human Siglec-8 in regulating microglial activation during neurodegeneration.
    MeSH term(s) Alzheimer Disease/metabolism ; Alzheimer Disease/pathology ; Amino Acid Sequence ; Animals ; Antibodies/metabolism ; Cell Death ; Cell Line ; Humans ; Inflammation/metabolism ; Inflammation/pathology ; Interferon-gamma/metabolism ; Mice, Transgenic ; Microglia/metabolism ; Microglia/pathology ; Nerve Degeneration/metabolism ; Nerve Degeneration/pathology ; Peptides/metabolism ; Phagocytosis ; Phosphoproteins/metabolism ; Phosphotyrosine/metabolism ; Proteome/metabolism ; Proteomics ; Sialic Acid Binding Immunoglobulin-like Lectins/chemistry ; Sialic Acid Binding Immunoglobulin-like Lectins/metabolism ; Signal Transduction ; Up-Regulation
    Chemical Substances Antibodies ; Peptides ; Phosphoproteins ; Proteome ; Sialic Acid Binding Immunoglobulin-like Lectins ; Siglecf protein, mouse ; Phosphotyrosine (21820-51-9) ; Interferon-gamma (82115-62-6)
    Language English
    Publishing date 2020-12-08
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 2193510-5
    ISSN 1744-4292 ; 1744-4292
    ISSN (online) 1744-4292
    ISSN 1744-4292
    DOI 10.15252/msb.20209819
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  10. Article ; Online: Somatic mosaicism reveals clonal distributions of neocortical development.

    Breuss, Martin W / Yang, Xiaoxu / Schlachetzki, Johannes C M / Antaki, Danny / Lana, Addison J / Xu, Xin / Chung, Changuk / Chai, Guoliang / Stanley, Valentina / Song, Qiong / Newmeyer, Traci F / Nguyen, An / O'Brien, Sydney / Hoeksema, Marten A / Cao, Beibei / Nott, Alexi / McEvoy-Venneri, Jennifer / Pasillas, Martina P / Barton, Scott T /
    Copeland, Brett R / Nahas, Shareef / Van Der Kraan, Lucitia / Ding, Yan / Glass, Christopher K / Gleeson, Joseph G

    Nature

    2022  Volume 604, Issue 7907, Page(s) 689–696

    Abstract: The structure of the human neocortex underlies species-specific traits and reflects intricate developmental programs. Here we sought to reconstruct processes that occur during early development by sampling adult human tissues. We analysed neocortical ... ...

    Abstract The structure of the human neocortex underlies species-specific traits and reflects intricate developmental programs. Here we sought to reconstruct processes that occur during early development by sampling adult human tissues. We analysed neocortical clones in a post-mortem human brain through a comprehensive assessment of brain somatic mosaicism, acting as neutral lineage recorders
    MeSH term(s) Cell Lineage ; Cells, Cultured ; Clone Cells ; Humans ; Microglia ; Mosaicism ; Neocortex/cytology ; Neocortex/growth & development
    Language English
    Publishing date 2022-04-20
    Publishing country England
    Document type Journal Article
    ZDB-ID 120714-3
    ISSN 1476-4687 ; 0028-0836
    ISSN (online) 1476-4687
    ISSN 0028-0836
    DOI 10.1038/s41586-022-04602-7
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

To top