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  1. Article ; Online: Cadmium isotope fractionation in an intertidal soil induced by tidal pumping

    Michael Kersten / Moritz Bigalke / Matthias Sieber / Matthias Wiggenhauser

    Environmental Advances, Vol 8, Iss , Pp 100182- (2022)

    2022  

    Abstract: Estuarine floodplain soils are both sinks and potential sources of toxic trace metals such as Cd. Mobilization of Cd has been identified through spatiotemporal monitoring in intertidal sediments during the last decades, but no information was yet ... ...

    Abstract Estuarine floodplain soils are both sinks and potential sources of toxic trace metals such as Cd. Mobilization of Cd has been identified through spatiotemporal monitoring in intertidal sediments during the last decades, but no information was yet available as to what extent these biogeochemical dynamics change the Cd isotopic composition. Cores of an Aquic Udifluvent soil from an intertidal mudflat of the Elbe River, Germany, were sub-sampled at 2 cm intervals to a depth of 40 cm corresponding to a sedimentation of about 10 years. Strong redox zonation was found in the cores, with an upper suboxic zone and a lower anoxic zone of significantly different Cd isotopy. Cadmium partitioning and pore water data determined in 1985 and 1988 using a sequential extraction procedure were reassessed to explain the variations in the δ114Cd values determined in this study. The redox conditions in the mudflat soil were found to change from suboxic (Eh 300 mV) to anoxic (Eh –100 mV) at 20 cm. This was caused by semi-diurnal flooding with oxygenated river water (tidal pumping). The δ114Cd values varied systematically with depth and were correlated with the redox profile. The intense tidal water flow caused lighter Cd isotopes to desorb more readily from the parent soil in the upper suboxic zone and to subsequently redepositing in the deeper anoxic (sulfidic) zone, where the lighter Cd mobilized from Fe/Mn oxyhydroxides was found to be scavenged in sulfidic form. Tidal advection of dissolved lighter Cd down to the anoxic zone and sulfidic reprecipitation led to a decrease in δ114Cd value of up to -0.2‰ with signals of ±0.1‰ even on a seasonal timescale. It became clear that apportioning sources using Cd isotopes would be difficult given the sensitivity of the isotope record to such early-diagenetic isotope fractionation reactions.
    Keywords Mudflat ; Biogeochemistry ; Cd contamination ; Cd mobilization ; Metal isotopes ; Environmental sciences ; GE1-350
    Subject code 550 ; 500
    Language English
    Publishing date 2022-07-01T00:00:00Z
    Publisher Elsevier
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  2. Thesis ; Online: The role of the Southern Ocean in the global biogeochemical cycling of cadmium and zinc and their isotopes

    Sieber, Matthias

    2019  

    Abstract: Trace elements, particularly transition metals, are critical for the growth of marine organisms, acting as micronutrients that fulfil vital functions in numerous biological processes. Over the past decades, a rapidly expanding body of research has shown ... ...

    Abstract Trace elements, particularly transition metals, are critical for the growth of marine organisms, acting as micronutrients that fulfil vital functions in numerous biological processes. Over the past decades, a rapidly expanding body of research has shown that their oceanic distributions play a key role in controlling primary production in the upper ocean, influence the functioning of ocean ecosystems and impact the global carbon cycle. Specifically, the onset of the global GEOTRACES program has yielded important new insights into the marine biogeochemical cycles of trace elements and their isotopes at an unprecedented scale. The motivation for this work stems from the observation that the coupling of biogeochemical processes and physical circulation in the Southern Ocean plays a central role in determining the global distribution of trace metals such as cadmium (Cd) and zinc (Zn). This dissertation investigates in detail the effects of biogeochemical and physical process in the surface Southern Ocean on the distribution of dissolved Cd and Zn as well as the associated isotope systematics. Furthermore, it examines how distinct signatures are imparted during water mass formation and subsequently control Cd and Zn concentrations and their isotope distributions in the low latitude oceans. The first chapter examines to what extent distinct, southern-sourced signatures control the distribution of Cd and δ114Cd in the lower latitude South Pacific. Pre-formed signatures in intermediate waters, Subantarctic Mode Water (SAMW) and Antarctic Intermediate Water (AAIW), are strongly conserved as far north as 30°S, and overall, large-scale mixing of water mass endmembers with defined Cd and δ114Cd signatures can explain the subsurface distribution in the South Pacific remarkably well. Because, ultimately, all of the South Pacific subsurface water mass endmembers are Southern Ocean derived, this documents the importance of surface Southern Ocean processes for the global distribution of trace metals such as Cd. On a more regional ...
    Keywords info:eu-repo/classification/ddc/550 ; Earth sciences
    Subject code 551
    Language English
    Publisher ETH Zurich
    Publishing country ch
    Document type Thesis ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  3. Article: A chemical probe unravels the reactive proteome of health-associated catechols.

    Weigert Muñoz, Angela / Meighen-Berger, Kevin M / Hacker, Stephan M / Feige, Matthias J / Sieber, Stephan A

    Chemical science

    2023  Volume 14, Issue 32, Page(s) 8635–8643

    Abstract: Catechol-containing natural products are common constituents of foods, drinks, and drugs. Natural products carrying this motif are often associated with beneficial biological effects such as anticancer activity and neuroprotection. However, the molecular ...

    Abstract Catechol-containing natural products are common constituents of foods, drinks, and drugs. Natural products carrying this motif are often associated with beneficial biological effects such as anticancer activity and neuroprotection. However, the molecular mode of action behind these properties is poorly understood. Here, we apply a mass spectrometry-based competitive chemical proteomics approach to elucidate the target scope of catechol-containing bioactive molecules from diverse foods and drugs. Inspired by the protein reactivity of catecholamine neurotransmitters, we designed and synthesised a broadly reactive minimalist catechol chemical probe based on dopamine. Initial labelling experiments in live human cells demonstrated broad protein binding by the probe, which was largely outcompeted by its parent compound dopamine. Next, we investigated the competition profile of a selection of biologically relevant catechol-containing substances. With this approach, we characterised the protein reactivity and the target scope of dopamine and ten biologically relevant catechols. Strikingly, proteins associated with the endoplasmic reticulum (ER) were among the main targets. ER stress assays in the presence of reactive catechols revealed an activation of the unfolded protein response (UPR). The UPR is highly relevant in oncology and cellular resilience, which may provide an explanation of the health-promoting effects attributed to many catechol-containing natural products.
    Language English
    Publishing date 2023-07-22
    Publishing country England
    Document type Journal Article
    ZDB-ID 2559110-1
    ISSN 2041-6539 ; 2041-6520
    ISSN (online) 2041-6539
    ISSN 2041-6520
    DOI 10.1039/d3sc00888f
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Chasing iron bioavailability in the Southern Ocean: Insights from

    Fourquez, Marion / Janssen, David J / Conway, Tim M / Cabanes, Damien / Ellwood, Michael J / Sieber, Matthias / Trimborn, Scarlett / Hassler, Christel

    Science advances

    2023  Volume 9, Issue 26, Page(s) eadf9696

    Abstract: Dissolved iron (dFe) availability limits the uptake of atmospheric ... ...

    Abstract Dissolved iron (dFe) availability limits the uptake of atmospheric CO
    MeSH term(s) Iron/chemistry ; Haptophyta ; Biological Availability ; Climate ; Oceans and Seas
    Chemical Substances Iron (E1UOL152H7)
    Language English
    Publishing date 2023-06-28
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2810933-8
    ISSN 2375-2548 ; 2375-2548
    ISSN (online) 2375-2548
    ISSN 2375-2548
    DOI 10.1126/sciadv.adf9696
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Book ; Online ; Thesis: Investigation of prokaryotic adrenergic protein targets in Vibrio campbellii & investigation of the catechol-reactive proteome

    Weigert Muñoz, Angela-Maria [Verfasser] / Sieber, Stephan A. [Akademischer Betreuer] / Wright, Megan [Gutachter] / Feige, Matthias [Gutachter] / Sieber, Stephan A. [Gutachter]

    2023  

    Author's details Angela-Maria Weigert Muñoz ; Gutachter: Megan Wright, Matthias Feige, Stephan A. Sieber ; Betreuer: Stephan A. Sieber
    Keywords Biowissenschaften, Biologie ; Life Science, Biology
    Subject code sg570
    Language English
    Publisher Universitätsbibliothek der TU München
    Publishing place München
    Document type Book ; Online ; Thesis
    Database Digital theses on the web

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  6. Article ; Online: An amino acid domino effect orchestrates ClpP's conformational states.

    Stahl, Matthias / Sieber, Stephan A

    Current opinion in chemical biology

    2017  Volume 40, Page(s) 102–110

    Abstract: Maintaining the cellular protein homeostasis means managing life on the brink of death. This balance is largely based on precise fine-tuning of enzyme activities. For instance, the ClpP protease possesses several conformational switches which are ... ...

    Abstract Maintaining the cellular protein homeostasis means managing life on the brink of death. This balance is largely based on precise fine-tuning of enzyme activities. For instance, the ClpP protease possesses several conformational switches which are fundamental to regulating its activity. Efforts have focused on revealing the structural basis of ClpP's conformational control. In the last decade, several amino acid clusters have been identified and functionally linked to specific activation states. Researchers have now begun to couple these hotspots to one another, uncovering a global network of residues that switch in response to internal and external stimuli. For these studies, they used small molecules to mimic intermolecular interactions and point-mutational studies to shortcut regulating amino acid circuits.
    Language English
    Publishing date 2017-10
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 1439176-4
    ISSN 1879-0402 ; 1367-5931
    ISSN (online) 1879-0402
    ISSN 1367-5931
    DOI 10.1016/j.cbpa.2017.08.007
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Impact of elexacaftor/tezacaftor/ivacaftor on lung function, nutritional status, pulmonary exacerbation frequency and sweat chloride in people with cystic fibrosis: real-world evidence from the German CF Registry.

    Sutharsan, Sivagurunathan / Dillenhoefer, Stefanie / Welsner, Matthias / Stehling, Florian / Brinkmann, Folke / Burkhart, Manuel / Ellemunter, Helmut / Dittrich, Anna-Maria / Smaczny, Christina / Eickmeier, Olaf / Kappler, Matthias / Schwarz, Carsten / Sieber, Sarah / Naehrig, Susanne / Naehrlich, Lutz

    The Lancet regional health. Europe

    2023  Volume 32, Page(s) 100690

    Abstract: Background: Treatment with elexacaftor/tezacaftor/ivacaftor (ETI) improves multiple clinical outcomes in people with cystic fibrosis (pwCF) with at least one F508del allele. This study evaluated the real-world impact of ETI on lung function, nutritional ...

    Abstract Background: Treatment with elexacaftor/tezacaftor/ivacaftor (ETI) improves multiple clinical outcomes in people with cystic fibrosis (pwCF) with at least one F508del allele. This study evaluated the real-world impact of ETI on lung function, nutritional status, pulmonary exacerbation frequency, and sweat chloride concentrations in a large group of pwCF.
    Methods: This observational cohort study used data from the German CF Registry for pwCF who received ETI therapy and were followed up for a period of 12 months.
    Findings: The study included 2645 pwCF from 67 centres in Germany (mean age 28.0 ± 11.5 years). Over the first year after ETI was initiated, percent predicted forced expiratory volume in 1 s (ppFEV
    Interpretation: These real-world data are consistent with the findings of randomised clinical trials, and support the use of ETI as a highly effective treatment option for pwCF who have at least one F508del allele.
    Funding: None.
    Language English
    Publishing date 2023-07-28
    Publishing country England
    Document type Journal Article
    ISSN 2666-7762
    ISSN (online) 2666-7762
    DOI 10.1016/j.lanepe.2023.100690
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Temporal Dissipative Solitons in Time-Delay Feedback Systems.

    Yanchuk, Serhiy / Ruschel, Stefan / Sieber, Jan / Wolfrum, Matthias

    Physical review letters

    2019  Volume 123, Issue 5, Page(s) 53901

    Abstract: Localized states are a universal phenomenon observed in spatially distributed dissipative nonlinear systems. Known as dissipative solitons, autosolitons, and spot or pulse solutions, these states play an important role in data transmission using optical ... ...

    Abstract Localized states are a universal phenomenon observed in spatially distributed dissipative nonlinear systems. Known as dissipative solitons, autosolitons, and spot or pulse solutions, these states play an important role in data transmission using optical pulses, neural signal propagation, and other processes. While this phenomenon was thoroughly studied in spatially extended systems, temporally localized states are gaining attention only recently, driven primarily by applications from fiber or semiconductor lasers. Here we present a theory for temporal dissipative solitons (TDS) in systems with time-delayed feedback. In particular, we derive a system with an advanced argument, which determines the profile of the TDS. We also provide a complete classification of the spectrum of TDS into interface and pseudocontinuous spectrum. We illustrate our theory with two examples: a generic delayed phase oscillator, which is a reduced model for an injected laser with feedback, and the FitzHugh-Nagumo neuron with delayed feedback. Finally, we discuss possible destabilization mechanisms of TDS and show an example where the TDS delocalizes and its pseudocontinuous spectrum develops a modulational instability.
    Language English
    Publishing date 2019-09-12
    Publishing country United States
    Document type Journal Article
    ZDB-ID 208853-8
    ISSN 1079-7114 ; 0031-9007
    ISSN (online) 1079-7114
    ISSN 0031-9007
    DOI 10.1103/PhysRevLett.123.053901
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article: The Definition of Open Reading Frame Revisited.

    Sieber, Patricia / Platzer, Matthias / Schuster, Stefan

    Trends in genetics : TIG

    2018  Volume 34, Issue 3, Page(s) 167–170

    Abstract: The term open reading frame (ORF) is of central importance to gene finding. Surprisingly, at least three definitions are in use. We discuss several molecular biological and bioinformatics aspects, and we recommend using the definition in which an ORF is ... ...

    Abstract The term open reading frame (ORF) is of central importance to gene finding. Surprisingly, at least three definitions are in use. We discuss several molecular biological and bioinformatics aspects, and we recommend using the definition in which an ORF is bounded by stop codons.
    MeSH term(s) 5' Untranslated Regions/genetics ; Codon, Initiator/genetics ; Codon, Terminator/genetics ; Computational Biology/methods ; DNA/genetics ; Eukaryotic Cells/metabolism ; Exons/genetics ; Open Reading Frames/genetics ; Prokaryotic Cells/metabolism
    Chemical Substances 5' Untranslated Regions ; Codon, Initiator ; Codon, Terminator ; DNA (9007-49-2)
    Language English
    Publishing date 2018-01-30
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 619240-3
    ISSN 1362-4555 ; 0168-9525 ; 0168-9479
    ISSN (online) 1362-4555
    ISSN 0168-9525 ; 0168-9479
    DOI 10.1016/j.tig.2017.12.009
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Book ; Online ; Thesis: Bioinspirierte Catechol-Derivate der Cellulose

    Petzold, Matthias [Verfasser] / Zollfrank, Cordt [Akademischer Betreuer] / Sieber, Volker [Gutachter] / Zollfrank, Cordt [Gutachter]

    2021  

    Author's details Matthias Petzold ; Gutachter: Volker Sieber, Cordt Zollfrank ; Betreuer: Cordt Zollfrank
    Keywords Technische Chemie ; Technical Chemistry
    Subject code sg660
    Language German
    Publisher Universitätsbibliothek der TU München
    Publishing place München
    Document type Book ; Online ; Thesis
    Database Digital theses on the web

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