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  1. Article ; Online: Observer-based state feedback H

    Cao, En-Zhi / Zhang, Bao-Lin / Cai, Zhihui / Han, Qing-Long / Wang, Binrui

    ISA transactions

    2021  Volume 115, Page(s) 46–60

    Abstract: This article focuses on observer-based state feedback ... ...

    Abstract This article focuses on observer-based state feedback H
    Language English
    Publishing date 2021-01-06
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2012746-7
    ISSN 1879-2022 ; 0019-0578
    ISSN (online) 1879-2022
    ISSN 0019-0578
    DOI 10.1016/j.isatra.2021.01.006
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Efficacy of probiotic supplementation and impact on fecal microbiota in patients with inflammatory bowel disease: a systematic review and meta-analysis of randomized controlled trials.

    Xu, Mengque / Zhang, Wenluo / Lin, Beibei / Lei, Yue / Zhang, Yu / Chen, Binrui / Mao, Qingyi / Kim, John J / Cao, Qian

    Nutrition reviews

    2024  

    Abstract: Context: Research regarding the treatment of inflammatory bowel disease (IBD) with probiotics has not yielded consistent results.: Objective: The aim of this meta-analysis was to evaluate the efficacy of probiotics supplementation in patients with IBD. ...

    Abstract Context: Research regarding the treatment of inflammatory bowel disease (IBD) with probiotics has not yielded consistent results.
    Objective: The aim of this meta-analysis was to evaluate the efficacy of probiotics supplementation in patients with IBD.
    Data sources: Randomized controlled trials (RCTs) evaluating the efficacy of probiotics in patients with IBD were searched in PubMed, the Google Scholar database, Web of Science, and CrossRef for the period July 2003 to June 2023.
    Data extraction: The RCTs were extracted, independently by 2 authors, according to the PICOS criteria.
    Data analysis: Seven studies, including a total of 795 patients, met the study criteria. Five end points were selected to evaluate the efficacy. Of these, 3 indicators showed a statistically significant difference in efficacy: C-reactive protein (odds ratio [OR]: -2.45, 95% confidence interval [CI]: -3.16, -1.73, P < .01), the number of fecal Bifidobacterium (OR: 3.37, 95% CI: 3.28, 3.47, P < .01), and Lactobacillus(OR: 2.00, 95% CI: 1.91, 2.09, P < .01). The other 2 indicators (disease activity for Crohn's disease and for ulcerative colitis) showed no statistically significant difference, while the OR reflected a positive correlation.
    Conclusion: Probiotics supplementation may have a positive effect on IBD by reducing clinical symptoms, reducing the serological inflammatory markers, and increasing favorable gut flora in patients with IBD. Additional RCTs are needed to evaluate the therapeutic effect of probiotics in IBD.
    Language English
    Publishing date 2024-03-29
    Publishing country United States
    Document type Journal Article
    ZDB-ID 82067-2
    ISSN 1753-4887 ; 0029-6643
    ISSN (online) 1753-4887
    ISSN 0029-6643
    DOI 10.1093/nutrit/nuae022
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Target-Triggered Formation of Artificial Enzymes on Filamentous Phage for Ultrasensitive Direct Detection of Circulating miRNA Biomarkers in Clinical Samples.

    Zeng, Yan / Yue, Hui / Cao, Binrui / Li, Yan / Yang, Mingying / Mao, Chuanbin

    Angewandte Chemie (International ed. in English)

    2022  Volume 61, Issue 45, Page(s) e202210121

    Abstract: Integrating artificial enzymes onto nanostructures target- and site-specifically is still a challenge. Here we show that target miRNAs trigger the formation of DNAzyme site-specifically at the tip of filamentous phage for detecting miRNA biomarkers. ... ...

    Abstract Integrating artificial enzymes onto nanostructures target- and site-specifically is still a challenge. Here we show that target miRNAs trigger the formation of DNAzyme site-specifically at the tip of filamentous phage for detecting miRNA biomarkers. Through an antibody-modified oligonucleotide, the tip of the phage with magnetic nanoparticles on the sidewall captures a target miRNA, inducing the formation of DNAzyme that extends from the phage tip through a hybridization chain reaction. After magnetic separation, the resultant complex catalyzes a colorimetric reaction with the signal correlated to target concentrations, leading to the quantification of miRNAs with a detection limit of 5.0 fM, about 10
    MeSH term(s) Humans ; DNA, Catalytic/metabolism ; Nucleic Acid Hybridization ; Colorimetry ; MicroRNAs/genetics ; Biomarkers ; Limit of Detection ; Biosensing Techniques
    Chemical Substances DNA, Catalytic ; MicroRNAs ; Biomarkers
    Language English
    Publishing date 2022-10-07
    Publishing country Germany
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2011836-3
    ISSN 1521-3773 ; 1433-7851
    ISSN (online) 1521-3773
    ISSN 1433-7851
    DOI 10.1002/anie.202210121
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Phage nanofibers in nanomedicine: Biopanning for early diagnosis, targeted therapy, and proteomics analysis.

    Xu, Hong / Cao, Binrui / Li, Yan / Mao, Chuanbin

    Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology

    2020  Volume 12, Issue 4, Page(s) e1623

    Abstract: Display of a peptide or protein of interest on the filamentous phage (also known as bacteriophage), a biological nanofiber, has opened a new route for disease diagnosis and therapy as well as proteomics. Earlier phage display was widely used in protein- ... ...

    Abstract Display of a peptide or protein of interest on the filamentous phage (also known as bacteriophage), a biological nanofiber, has opened a new route for disease diagnosis and therapy as well as proteomics. Earlier phage display was widely used in protein-protein or antigen-antibody studies. In recent years, its application in nanomedicine is becoming increasingly popular and encouraging. We aim to review the current status in this research direction. For better understanding, we start with a brief introduction of basic biology and structure of the filamentous phage. We present the principle of phage display and library construction method on the basis of the filamentous phage. We summarize the use of the phage displayed peptide library for selecting peptides with high affinity against cells or tissues. We then review the recent applications of the selected cell or tissue targeting peptides in developing new targeting probes and therapeutics to advance the early diagnosis and targeted therapy of different diseases in nanomedicine. We also discuss the integration of antibody phage display and modern proteomics in discovering new biomarkers or target proteins for disease diagnosis and therapy. Finally, we propose an outlook for further advancing the potential impact of phage display on future nanomedicine. This article is categorized under: Biology-Inspired Nanomaterials > Protein and Virus-Based Structures.
    MeSH term(s) Bacteriophages/physiology ; Bioprospecting ; Humans ; Molecular Targeted Therapy ; Nanofibers/chemistry ; Nanomedicine ; Proteomics
    Language English
    Publishing date 2020-03-08
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S. ; Review
    ZDB-ID 2502698-7
    ISSN 1939-0041 ; 1939-5116
    ISSN (online) 1939-0041
    ISSN 1939-5116
    DOI 10.1002/wnan.1623
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Electroacupuncture Enhances Gastric Accommodation via the Autonomic and Cytokine Mechanisms in Functional Dyspepsia.

    Chen, Xiaoli / Chen, Xin / Chen, Binrui / Du, Lijun / Wang, Yu / Huang, Zhihui / Dai, Ning / Chen, Jiande D Z / Cao, Qian

    Digestive diseases and sciences

    2022  Volume 68, Issue 1, Page(s) 98–105

    Abstract: Background: Due to complex pathophysiology of functional dyspepsia, medications to treat functional dyspepsia are not effective for all patients. Transcutaneous electrical acustimulation (TEA) is an potentially effective therapy for functional dyspepsia ...

    Abstract Background: Due to complex pathophysiology of functional dyspepsia, medications to treat functional dyspepsia are not effective for all patients. Transcutaneous electrical acustimulation (TEA) is an potentially effective therapy for functional dyspepsia without proofs of definite mechanisms.
    Aims: We aimed to investigate the therapeutic impacts of TEA on postprandial distress syndrome (PDS) and explore potential neuroimmune mechanisms.
    Methods: We conducted a double-blinded, randomized, controlled trial in 30 PDS patients randomized for 4-week TEA or sham-TEA. Dyspeptic symptoms, gastric accommodation, gastric emptying and heart rate variability (HRV) were assessed. Duodenal mucosal inflammation was also evaluated.
    Results: The dyspeptic symptoms were improved with TEA compared with sham-TEA (P = 0.03). The initial satiety volume and the maximum tolerable volume (MTV) were both improved after the TEA treatment, compared with the sham-TEA group (P all < 0.05). The gastric emptying time (T1/2) was not altered with TEA or sham-TEA. The TEA treatment increased vagal activity and decreased sympathovagal ratio assessed by HRV (P all < 0.01). The IL-6 expression in bulb mucosa was downregulated by the TEA treatment compared to the baseline (P < 0.05).
    Conclusions: Noninvasive TEA improves gastric accommodation and dyspeptic symptoms, possibly by downregulating the IL-6 expression in duodenal bulb mucosa via the vagal efferent pathway.
    MeSH term(s) Humans ; Dyspepsia/therapy ; Electroacupuncture ; Interleukin-6 ; Gastric Emptying ; Stomach Diseases
    Chemical Substances Interleukin-6
    Language English
    Publishing date 2022-05-03
    Publishing country United States
    Document type Randomized Controlled Trial ; Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 304250-9
    ISSN 1573-2568 ; 0163-2116
    ISSN (online) 1573-2568
    ISSN 0163-2116
    DOI 10.1007/s10620-022-07495-8
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Virus-Based Cancer Therapeutics for Targeted Photodynamic Therapy.

    Cao, Binrui / Xu, Hong / Yang, Mingying / Mao, Chuanbin

    Methods in molecular biology (Clifton, N.J.)

    2018  Volume 1776, Page(s) 643–652

    Abstract: Cancer photodynamic therapy (PDT) involves the absorption of light by photosensitizers (PSs) to generate cytotoxic singlet oxygen for killing cancer cells. The success of this method is usually limited by the lack of selective accumulation of the PS at ... ...

    Abstract Cancer photodynamic therapy (PDT) involves the absorption of light by photosensitizers (PSs) to generate cytotoxic singlet oxygen for killing cancer cells. The success of this method is usually limited by the lack of selective accumulation of the PS at cancer cells. Bioengineered viruses with cancer cell-targeting peptides fused on their surfaces are great drug carriers that can guide the PS to cancer cells for targeted cancer treatment. Here, we use cell-targeting fd bacteriophages (phages) as an example to describe how to chemically conjugate PSs (e.g., pyropheophorbide-a (PPa)) onto a phage particle to achieve targeted PDT.
    MeSH term(s) Antineoplastic Agents/chemistry ; Antineoplastic Agents/therapeutic use ; Apoptosis/drug effects ; Cell Line, Tumor ; Chlorophyll/analogs & derivatives ; Chlorophyll/chemistry ; Chlorophyll/therapeutic use ; Drug Carriers ; Humans ; Oncolytic Viruses/chemistry ; Oncolytic Viruses/genetics ; Peptides/chemistry ; Peptides/therapeutic use ; Photochemotherapy/methods ; Photosensitizing Agents/chemistry ; Photosensitizing Agents/therapeutic use ; Singlet Oxygen/chemistry
    Chemical Substances Antineoplastic Agents ; Drug Carriers ; Peptides ; Photosensitizing Agents ; Chlorophyll (1406-65-1) ; Singlet Oxygen (17778-80-2) ; pyropheophorbide a (24533-72-0)
    Language English
    Publishing date 2018-06-04
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ISSN 1940-6029
    ISSN (online) 1940-6029
    DOI 10.1007/978-1-4939-7808-3_41
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: Intensifying Ethylene and Propylene of Pentene Cracking of FCC Gasoline by Modulating the Brønsted Acid Site Concentrations

    Sun, Hailing / Zhang, Binrui / Wei, Chenhao / Cao, Liyuan / Zhang, Yuhao / Zhao, Liang / Gao, Jinsen / Xu, Chunming

    Industrial & engineering chemistry process design and development. 2021 Nov. 24, v. 60, no. 48

    2021  

    Abstract: To reveal the effects of Brønsted acid site concentrations on product distribution and reaction pathways of pentene cracking, ZSM-5 zeolites with similar pore structures and different acid concentrations were prepared and evaluated using C₅ distillate of ...

    Abstract To reveal the effects of Brønsted acid site concentrations on product distribution and reaction pathways of pentene cracking, ZSM-5 zeolites with similar pore structures and different acid concentrations were prepared and evaluated using C₅ distillate of FCC gasoline as feed. Three indexes related to reaction pathways (M/B, P/O, and A/O) were defined. A high strong Brønsted acid sites (SBAS) concentration favored the increase in the M/B index to promote monomolecular cracking pathways. However, the P/O index and the A/O index also increased, resulting from the enhancement of the hydrogen transfer reaction and aromatization. Therefore, an intermediate concentration of SBAS was advantageous to produce more ethylene and propylene. The optimum concentration range of SBAS was 4.4–6.7 μmol·g–¹ for the maximum total yield of ethylene and propylene (74.7 wt %). The indexes (M/B, P/O, and A/O) provided a new thought to optimize the design of catalysts for intensifying ethylene and propylene by controlling the olefin cracking reaction pathways.
    Keywords aromatization ; ethylene ; gasoline ; hydrogen ; olefin ; process design ; propylene ; zeolites
    Language English
    Dates of publication 2021-1124
    Size p. 17469-17479.
    Publishing place American Chemical Society
    Document type Article
    ZDB-ID 1484436-9
    ISSN 1520-5045 ; 0888-5885
    ISSN (online) 1520-5045
    ISSN 0888-5885
    DOI 10.1021/acs.iecr.1c03310
    Database NAL-Catalogue (AGRICOLA)

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  8. Article: Understanding the interactions between bone mineral crystals and their binding peptides derived from filamentous phage

    Li, Yan / Cao, Binrui / Modali, Sita / Lee, Elizabeth M.Y. / Xu, Hong / Petrenko, Valery / Gray, Jeffrey J. / Yang, Mingying / Mao, Chuanbin

    Materials today advances. 2022 Aug., v. 15

    2022  

    Abstract: Hydroxyapatite (HAP) is the main inorganic component of natural bone and assembled along collagen fibers. HAP is formed under the regulation of bone proteins (BPs) including collagen and non-collagenous proteins (NCPs, such as osteocalcin, osteopontin, ... ...

    Abstract Hydroxyapatite (HAP) is the main inorganic component of natural bone and assembled along collagen fibers. HAP is formed under the regulation of bone proteins (BPs) including collagen and non-collagenous proteins (NCPs, such as osteocalcin, osteopontin, osteonectin, and bone sialoprotein) during biomineralization. However, the mechanism of the BPs regulating the HAP biomineralization is still unclear and some HAP-interacting domains on BPs have not yet been identified. To understand the interactions between HAP and the peptide motifs, similar to functional motifs on BPs, we employed a sidewall-displayed phage library, instead of a traditional tip-displayed phage library, to discover novel HAP-binding peptides. HAP-binding peptides were expressed as pVIII fusion proteins into the capsid of the filamentous fd phages. By a few rounds of biopanning of the landscape phage library against HAP, we identified multiple HAP-binding peptides. The affinity-selected peptide sequences were aligned to the sequences of BPs using a receptor ligand contacts (RELIC) program, RELIC/MATCH, which is a bioinformatics software that identifies protein-ligand interaction sites and herein discovers the putative HAP-binding domains on these BPs. By both confirming some known HAP-binding domains and identifying new HAP-binding domains, we clarified some mechanisms of HAP-BP interactions. Through a series of binding assays, we discovered that DSSTPSST peptide is the best HAP binder. Using a protein structure prediction model within the Rosetta software suite, we found that the best binding peptides had the lowest peptide-HAP interfacial energy, consistent with the binding assay studies. Simulations suggested that the stable turn-like structure owing to a proline residue in the DSSTPSST peptide enabled favorable electrostatic interactions between aspartate residues in the N-terminal domain and calcium ions in HAP. The phages that displayed DSSTPSST on the sidewall bound and aligned the HAP nanorods along its sidewall, forming HAP-decorated nanofibers. Through a freeze-casting approach, the HAP-decorated nanofibers were assembled into a macroscale scaffold that supported the proliferation of mesenchymal stem cells. Therefore, our work demonstrates a new understanding of HAP-peptide interactions that can be exploited to produce HAP-based biomaterials with potential applications in bone tissue engineering.
    Keywords DNA libraries ; aspartic acid ; bacteriophages ; biocompatible materials ; bioinformatics ; biomineralization ; bones ; calcium ; capsid ; collagen ; computer software ; energy ; hydroxyapatite ; landscapes ; ligands ; models ; nanofibers ; nanorods ; osteocalcin ; osteopontin ; peptides ; proline ; protein structure
    Language English
    Dates of publication 2022-08
    Publishing place Elsevier Ltd
    Document type Article
    ISSN 2590-0498
    DOI 10.1016/j.mtadv.2022.100263
    Database NAL-Catalogue (AGRICOLA)

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  9. Article ; Online: Phage as a Genetically Modifiable Supramacromolecule in Chemistry, Materials and Medicine.

    Cao, Binrui / Yang, Mingying / Mao, Chuanbin

    Accounts of chemical research

    2016  Volume 49, Issue 6, Page(s) 1111–1120

    Abstract: Filamentous bacteriophage (phage) is a genetically modifiable supramacromolecule. It can be pictured as a semiflexible nanofiber (∼900 nm long and ∼8 nm wide) made of a DNA core and a protein shell with the former genetically encoding the latter. ... ...

    Abstract Filamentous bacteriophage (phage) is a genetically modifiable supramacromolecule. It can be pictured as a semiflexible nanofiber (∼900 nm long and ∼8 nm wide) made of a DNA core and a protein shell with the former genetically encoding the latter. Although phage bioengineering and phage display techniques were developed before the 1990s, these techniques have not been widely used for chemistry, materials, and biomedical research from the perspective of supramolecular chemistry until recently. Powered by our expertise in displaying a foreign peptide on its surface through engineering phage DNA, we have employed phage to identify target-specific peptides, construct novel organic-inorganic nanohybrids, develop biomaterials for disease treatment, and generate bioanalytical methods for disease diagnosis. Compared with conventional biomimetic chemistry, phage-based supramolecular chemistry represents a new frontier in chemistry, materials science, and medicine. In this Account, we introduce our recent successful efforts in phage-based supramolecular chemistry, by integrating the unique nanofiber-like phage structure and powerful peptide display techniques into the fields of chemistry, materials science, and medicine: (1) successfully synthesized and assembled silica, hydroxyapatite, and gold nanoparticles using phage templates to form novel functional materials; (2) chemically introduced azo units onto the phage to form photoresponsive functional azo-phage nanofibers via a diazotization reaction between aromatic amino groups and the tyrosine residues genetically displayed on phage surfaces; (3) assembled phage into 2D films for studying the effects of both biochemical (the peptide sequences displayed on the phages) and biophysical (the topographies of the phage films) cues on the proliferation and differentiation of mesenchymal stem cells (MSCs) and induced pluripotent stem cells (iPSCs) and identified peptides and topographies that can induce their osteogenic differentiation; (4) discovered that phage could induce angiogenesis and osteogenesis for MSC-based vascularized bone regeneration; (5) identified novel breast cancer cell-targeting and MSC-targeting peptides and used them to significantly improve the efficiency of targeted cancer therapy and MSC-based gene delivery, respectively; (6) employed engineered phage as a probe to achieve ultrasensitive detection of biomarkers from serum of human patients for disease diagnosis; and (7) constructed centimeter-scale 3D multilayered phage assemblies with the potential application as scaffolds for bone regeneration and functional device fabrication. Our findings demonstrated that phage is indeed a very powerful supramacromolecule suitable for not only developing novel nanostructures and biomaterials but also advancing important fields in biomedicine, including molecular targeting, cancer diagnosis and treatment, drug and gene delivery, stem cell fate direction, and tissue regeneration. Our successes in exploiting phage in chemistry, materials, and medicine suggest that phage itself is nontoxic at the cell level and can be safely used for detecting biomarkers in vitro. Moreover, although we have demonstrated successful in vivo tissue regeneration induced by phage, we believe future studies are needed to evaluate the in vivo biodistribution and potential risks of the phage-based biomaterials.
    MeSH term(s) Bacteriophages/genetics ; Biocompatible Materials ; Biosensing Techniques ; Bone Regeneration ; Cell Differentiation ; Cell Proliferation ; DNA, Viral/genetics ; Diagnosis ; Drug Carriers ; Genetic Vectors ; Humans ; Induced Pluripotent Stem Cells/cytology
    Chemical Substances Biocompatible Materials ; DNA, Viral ; Drug Carriers
    Language English
    Publishing date 2016-05-06
    Publishing country United States
    Document type Journal Article ; Research Support, U.S. Gov't, Non-P.H.S. ; Research Support, Non-U.S. Gov't ; Research Support, N.I.H., Extramural
    ZDB-ID 1483291-4
    ISSN 1520-4898 ; 0001-4842
    ISSN (online) 1520-4898
    ISSN 0001-4842
    DOI 10.1021/acs.accounts.5b00557
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Bacteriophage-based biomaterials for tissue regeneration.

    Cao, Binrui / Li, Yan / Yang, Tao / Bao, Qing / Yang, Mingying / Mao, Chuanbin

    Advanced drug delivery reviews

    2018  Volume 145, Page(s) 73–95

    Abstract: Bacteriophage, also called phage, is a human-safe bacteria-specific virus. It is a monodisperse biological nanostructure made of proteins (forming the outside surface) and nucleic acids (encased in the protein capsid). Among different types of phages, ... ...

    Abstract Bacteriophage, also called phage, is a human-safe bacteria-specific virus. It is a monodisperse biological nanostructure made of proteins (forming the outside surface) and nucleic acids (encased in the protein capsid). Among different types of phages, filamentous phages have received great attention in tissue regeneration research due to their unique nanofiber-like morphology. They can be produced in an error-free format, self-assemble into ordered scaffolds, display multiple signaling peptides site-specifically, and serve as a platform for identifying novel signaling or homing peptides. They can direct stem cell differentiation into specific cell types when they are organized into proper patterns or display suitable peptides. These unusual features have allowed scientists to employ them to regenerate a variety of tissues, including bone, nerves, cartilage, skin, and heart. This review will summarize the progress in the field of phage-based tissue regeneration and the future directions in this field.
    MeSH term(s) Animals ; Bacteriophages ; Biocompatible Materials ; Humans ; Regeneration ; Tissue Engineering
    Chemical Substances Biocompatible Materials
    Language English
    Publishing date 2018-11-16
    Publishing country Netherlands
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 639113-8
    ISSN 1872-8294 ; 0169-409X
    ISSN (online) 1872-8294
    ISSN 0169-409X
    DOI 10.1016/j.addr.2018.11.004
    Database MEDical Literature Analysis and Retrieval System OnLINE

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