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  1. Article ; Online: Guts and gastrulation: Emergence and convergence of endoderm in the mouse embryo.

    Nowotschin, Sonja / Hadjantonakis, Anna-Katerina

    Current topics in developmental biology

    2019  Volume 136, Page(s) 429–454

    Abstract: Gastrulation is a central process in mammalian development in which a spatiotemporally coordinated series of events driven by cross-talk between adjacent embryonic and extra-embryonic tissues results in stereotypical morphogenetic cell behaviors, massive ...

    Abstract Gastrulation is a central process in mammalian development in which a spatiotemporally coordinated series of events driven by cross-talk between adjacent embryonic and extra-embryonic tissues results in stereotypical morphogenetic cell behaviors, massive cell proliferation and the acquisition of distinct cell identities. Gastrulation provides the blueprint of the body plan of the embryo, as well as generating extra-embryonic cell types of the embryo to make a connection with its mother. Gastrulation involves the specification of mesoderm and definitive endoderm from pluripotent epiblast, concomitant with a highly ordered elongation of tissue along the anterior-posterior (AP) axis. Interestingly, cells with an endoderm identity arise twice during mouse development. Cells with a primitive endoderm identity are specified in the preimplantation blastocyst, and which at gastrulation intercalate with the emergent definitive endoderm to form a mosaic tissue, referred to as the gut endoderm. The gut endoderm gives rise to the gut tube, which will subsequently become patterned along its AP axis into domains possessing unique visceral organ identities, such as thyroid, lung, liver and pancreas. In this way, proper endoderm development is essential for vital organismal functions, including the absorption of nutrients, gas exchange, detoxification and glucose homeostasis.
    MeSH term(s) Animals ; Embryo, Mammalian/cytology ; Embryo, Mammalian/physiology ; Endoderm/cytology ; Endoderm/physiology ; Gastrointestinal Tract/cytology ; Gastrointestinal Tract/physiology ; Gastrulation ; Germ Layers/cytology ; Germ Layers/physiology ; Mesoderm/cytology ; Mesoderm/physiology ; Mice ; Morphogenesis
    Language English
    Publishing date 2019-12-18
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Review
    ISSN 1557-8933 ; 0070-2153
    ISSN (online) 1557-8933
    ISSN 0070-2153
    DOI 10.1016/bs.ctdb.2019.11.012
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Lights, Camera, Action! Visualizing the Cellular Choreography of Mouse Gastrulation.

    Nowotschin, Sonja / Hadjantonakis, Anna-Katerina

    Developmental cell

    2018  Volume 47, Issue 6, Page(s) 684–685

    Abstract: When it comes to live imaging, the mouse has always played catch-up with models like the zebrafish or fruit fly. Recent work reports a technical tour de force toward the in toto visualization of mouse early post-implantation embryo development at an ... ...

    Abstract When it comes to live imaging, the mouse has always played catch-up with models like the zebrafish or fruit fly. Recent work reports a technical tour de force toward the in toto visualization of mouse early post-implantation embryo development at an unprecedented spatio-temporal resolution.
    MeSH term(s) Animals ; Embryonic Development ; Gastrulation ; Mice ; Zebrafish
    Language English
    Publishing date 2018-11-15
    Publishing country United States
    Document type Journal Article ; Comment
    ZDB-ID 2054967-2
    ISSN 1878-1551 ; 1534-5807
    ISSN (online) 1878-1551
    ISSN 1534-5807
    DOI 10.1016/j.devcel.2018.11.049
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: The endoderm: a divergent cell lineage with many commonalities.

    Nowotschin, Sonja / Hadjantonakis, Anna-Katerina / Campbell, Kyra

    Development (Cambridge, England)

    2019  Volume 146, Issue 11

    Abstract: The endoderm is a progenitor tissue that, in humans, gives rise to the majority of internal organs. Over the past few decades, genetic studies have identified many of the upstream signals specifying endoderm identity in different model systems, revealing ...

    Abstract The endoderm is a progenitor tissue that, in humans, gives rise to the majority of internal organs. Over the past few decades, genetic studies have identified many of the upstream signals specifying endoderm identity in different model systems, revealing them to be divergent from invertebrates to vertebrates. However, more recent studies of the cell behaviours driving endodermal morphogenesis have revealed a surprising number of shared features, including cells undergoing epithelial-to-mesenchymal transitions (EMTs), collective cell migration, and mesenchymal-to-epithelial transitions (METs). In this Review, we highlight how cross-organismal studies of endoderm morphogenesis provide a useful perspective that can move our understanding of this fascinating tissue forward.
    MeSH term(s) Animals ; Biological Evolution ; Cell Differentiation/physiology ; Cell Lineage/physiology ; Cell Movement/physiology ; Endoderm/cytology ; Endoderm/embryology ; Endoderm/physiology ; Epithelial-Mesenchymal Transition/physiology ; Humans ; Morphogenesis/physiology ; Signal Transduction ; Vertebrates/embryology
    Language English
    Publishing date 2019-06-03
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 90607-4
    ISSN 1477-9129 ; 0950-1991
    ISSN (online) 1477-9129
    ISSN 0950-1991
    DOI 10.1242/dev.150920
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Single-cell analysis of bidirectional reprogramming between early embryonic states reveals mechanisms of differential lineage plasticities.

    Garg, Vidur / Yang, Yang / Nowotschin, Sonja / Setty, Manu / Kuo, Ying-Yi / Sharma, Roshan / Polyzos, Alexander / Salataj, Eralda / Murphy, Dylan / Jang, Amy / Pe'er, Dana / Apostolou, Effie / Hadjantonakis, Anna-Katerina

    bioRxiv : the preprint server for biology

    2023  

    Abstract: Two distinct fates, pluripotent epiblast (EPI) and primitive (extra-embryonic) endoderm (PrE), arise from common progenitor cells, the inner cell mass (ICM), in mammalian embryos. To study how these sister identities are forged, we leveraged embryonic ( ... ...

    Abstract Two distinct fates, pluripotent epiblast (EPI) and primitive (extra-embryonic) endoderm (PrE), arise from common progenitor cells, the inner cell mass (ICM), in mammalian embryos. To study how these sister identities are forged, we leveraged embryonic (ES) and e
    Language English
    Publishing date 2023-03-29
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2023.03.28.534648
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Ex Utero Culture and Imaging of Mouse Embryos.

    Nowotschin, Sonja / Garg, Vidur / Piliszek, Anna / Hadjantonakis, Anna-Katerina

    Methods in molecular biology (Clifton, N.J.)

    2019  Volume 1920, Page(s) 163–182

    Abstract: Mouse genetic approaches when combined with live imaging tools are revolutionizing our current understanding of mammalian developmental biology. The availability and improvement of a wide variety of genetically encoded fluorescent proteins have provided ... ...

    Abstract Mouse genetic approaches when combined with live imaging tools are revolutionizing our current understanding of mammalian developmental biology. The availability and improvement of a wide variety of genetically encoded fluorescent proteins have provided indispensable tools to visualize cells and subcellular features in living organisms. It is now possible to generate genetically modified mouse lines expressing several spectrally distinct fluorescent proteins in a tissue-specific or -inducible manner. Such reporter-expressing lines make it possible to image dynamic cellular behaviors in the context of living embryos undergoing normal or aberrant development. As with all viviparous mammals, mouse embryos develop within the uterus, and so live imaging experiments require culture conditions that closely mimic the in vivo environment. Over the past decades, significant advances have been made in developing conditions for culturing both pre- and postimplantation-stage mouse embryos. In this chapter, we discuss routine methods for ex utero culture of preimplantation- and postimplantation-stage mouse embryos. In particular, we describe protocols for collecting mouse embryos of various stages, setting up culture conditions for their ex utero culture and imaging, and using laser scanning confocal microscopy to visualize live processes in mouse embryos expressing fluorescent reporters.
    MeSH term(s) Animals ; Embryo Culture Techniques ; Embryo, Mammalian ; Embryonic Development/genetics ; Female ; Gene Expression ; Genes, Reporter ; Green Fluorescent Proteins/genetics ; Humans ; Mice ; Microscopy, Confocal/methods ; Molecular Imaging/methods ; Time-Lapse Imaging
    Chemical Substances Green Fluorescent Proteins (147336-22-9)
    Language English
    Publishing date 2019-01-11
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ISSN 1940-6029
    ISSN (online) 1940-6029
    DOI 10.1007/978-1-4939-9009-2_11
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: Visualizing endoderm cell populations and their dynamics in the mouse embryo with a

    Wu, Tao / Hadjantonakis, Anna-Katerina / Nowotschin, Sonja

    Biology open

    2017  Volume 6, Issue 5, Page(s) 678–687

    Abstract: Live imaging is the requisite tool for studying cell behaviors driving embryonic development and tissue formation. Genetically encoded reporters expressed under cell type- ... ...

    Abstract Live imaging is the requisite tool for studying cell behaviors driving embryonic development and tissue formation. Genetically encoded reporters expressed under cell type-specific
    Language English
    Publishing date 2017-05-15
    Publishing country England
    Document type Journal Article
    ZDB-ID 2632264-X
    ISSN 2046-6390
    ISSN 2046-6390
    DOI 10.1242/bio.024638
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Live imaging mouse embryonic development: seeing is believing and revealing.

    Nowotschin, Sonja / Hadjantonakis, Anna-Katerina

    Methods in molecular biology (Clifton, N.J.)

    2013  Volume 1092, Page(s) 405–420

    Abstract: The use of genetically encoded fluorescent proteins has revolutionized the fields of cell and developmental biology and redefined our understanding of the dynamic morphogenetic processes that work to shape the embryo. Fluorescent proteins are routinely ... ...

    Abstract The use of genetically encoded fluorescent proteins has revolutionized the fields of cell and developmental biology and redefined our understanding of the dynamic morphogenetic processes that work to shape the embryo. Fluorescent proteins are routinely used as vital reporters to label tissues, cells, cellular organelles, or proteins of interest and in doing so provide contrasting agents enabling the acquisition of high-resolution quantitative image data. With the advent of more accessible and sophisticated imaging technologies and abundance of fluorescent proteins with different spectral characteristics, the dynamic processes taking place in situ in living embryos can now be probed. Here, we provide an overview of some recent advances in this rapidly evolving field.
    MeSH term(s) Animals ; Embryo, Mammalian ; Embryonic Development ; Green Fluorescent Proteins/chemistry ; Green Fluorescent Proteins/genetics ; Luminescent Proteins/chemistry ; Luminescent Proteins/genetics ; Mice ; Molecular Biology/methods ; Morphogenesis/genetics ; Staining and Labeling
    Chemical Substances Luminescent Proteins ; Green Fluorescent Proteins (147336-22-9)
    Language English
    Publishing date 2013-12-08
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Review
    ISSN 1940-6029
    ISSN (online) 1940-6029
    DOI 10.1007/978-1-60327-292-6_24
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Notochord morphogenesis in mice: Current understanding & open questions.

    Balmer, Sophie / Nowotschin, Sonja / Hadjantonakis, Anna-Katerina

    Developmental dynamics : an official publication of the American Association of Anatomists

    2016  Volume 245, Issue 5, Page(s) 547–557

    Abstract: The notochord is a structure common to all chordates, and the feature that the phylum Chordata has been named after. It is a rod-like mesodermal structure that runs the anterior-posterior length of the embryo, adjacent to the ventral neural tube. The ... ...

    Abstract The notochord is a structure common to all chordates, and the feature that the phylum Chordata has been named after. It is a rod-like mesodermal structure that runs the anterior-posterior length of the embryo, adjacent to the ventral neural tube. The notochord plays a critical role in embryonic tissue patterning, for example the dorsal-ventral patterning of the neural tube. The cells that will come to form the notochord are specified at gastrulation. Axial mesodermal cells arising at the anterior primitive streak migrate anteriorly as the precursors of the notochord and populate the notochordal plate. Yet, even though a lot of interest has centered on investigating the functional and structural roles of the notochord, we still have a very rudimentary understanding of notochord morphogenesis. The events driving the formation of the notochord are rapid, taking place over the period of approximately a day in mice. In this commentary, we provide an overview of our current understanding of mouse notochord morphogenesis, from the initial specification of axial mesendodermal cells at the primitive streak, the emergence of these cells at the midline on the surface of the embryo, to their submergence and organization of the stereotypically positioned notochord. We will also discuss some key open questions. Developmental Dynamics 245:547-557, 2016. © 2016 Wiley Periodicals, Inc.
    Language English
    Publishing date 2016-05
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1102541-4
    ISSN 1097-0177 ; 1058-8388
    ISSN (online) 1097-0177
    ISSN 1058-8388
    DOI 10.1002/dvdy.24392
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: GFRA2 Identifies Cardiac Progenitors and Mediates Cardiomyocyte Differentiation in a RET-Independent Signaling Pathway.

    Ishida, Hidekazu / Saba, Rie / Kokkinopoulos, Ioannis / Hashimoto, Masakazu / Yamaguchi, Osamu / Nowotschin, Sonja / Shiraishi, Manabu / Ruchaya, Prashant / Miller, Duncan / Harmer, Stephen / Poliandri, Ariel / Kogaki, Shigetoyo / Sakata, Yasushi / Dunkel, Leo / Tinker, Andrew / Hadjantonakis, Anna-Katerina / Sawa, Yoshiki / Sasaki, Hiroshi / Ozono, Keiichi /
    Suzuki, Ken / Yashiro, Kenta

    Cell reports

    2023  Volume 42, Issue 11, Page(s) 113383

    Language English
    Publishing date 2023-10-25
    Publishing country United States
    Document type Published Erratum
    ZDB-ID 2649101-1
    ISSN 2211-1247 ; 2211-1247
    ISSN (online) 2211-1247
    ISSN 2211-1247
    DOI 10.1016/j.celrep.2023.113383
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Visualizing endoderm cell populations and their dynamics in the mouse embryo with a Hex-tdTomato reporter

    Tao Wu / Anna-Katerina Hadjantonakis / Sonja Nowotschin

    Biology Open, Vol 6, Iss 5, Pp 678-

    2017  Volume 687

    Abstract: Live imaging is the requisite tool for studying cell behaviors driving embryonic development and tissue formation. Genetically encoded reporters expressed under cell type-specific cis-regulatory elements that drive fluorescent protein expression at ... ...

    Abstract Live imaging is the requisite tool for studying cell behaviors driving embryonic development and tissue formation. Genetically encoded reporters expressed under cell type-specific cis-regulatory elements that drive fluorescent protein expression at sufficient levels for visualization in living specimens have become indispensable for these studies. Increasingly dual-color (red-green) imaging is used for studying the coordinate behaviors of two cell populations of interest, identifying and characterizing subsets within broader cell populations or subcellular features. Many reporters have been generated using green fluorescent protein (GFP) due to its brightness and developmental neutrality. To compliment the large cohort of available GFP reporters that label cellular populations in early mouse embryos, we have generated a red fluorescent protein (RFP)-based transgenic reporter using the red fluorescent tdTomato protein driven by cis-regulatory elements from the mouse Hex locus. The Hex-tdTomato reporter predominantly labels endodermal cells. It is a bright RFP-based reporter of the distal visceral endoderm (DVE)/anterior visceral endoderm (AVE), a migratory population within the early post-implantation embryo. It also labels cells of the definitive endoderm (DE), which emerges at gastrulation. Dual-color visualization of these different early endodermal populations will provide a detailed understanding of the cellular behaviors driving key morphogenetic events involving the endoderm.
    Keywords Hex ; AVE ; Visceral endoderm ; Definitive endoderm ; Live imaging ; Gastrulation ; Red fluorescent protein ; Science ; Q ; Biology (General) ; QH301-705.5
    Subject code 616
    Language English
    Publishing date 2017-05-01T00:00:00Z
    Publisher The Company of Biologists
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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