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  1. Article ; Online: Short-Term Effects of Bamboo Biochar and Oyster Shell Powder on Soil Organic Carbon Fraction, Microbial Respiration, and Enzymatic Stoichiometry in a Lei Bamboo Plantation

    Ji, Haonan / Yuan, Gensheng / Liu, Yang / Yu, Jinzhu / Li, Songhao / Wu, Qifeng / Qin, Hua / Chen, Junhui

    Forests. 2023 Apr. 21, v. 14, no. 4

    2023  

    Abstract: Both biochar and oyster shell powder have been known as promising amendments to ameliorate soil acidity and enhance soil fertility. However, it is still unclear how their application alone and in combination affect the soil organic carbon (C) fraction ... ...

    Abstract Both biochar and oyster shell powder have been known as promising amendments to ameliorate soil acidity and enhance soil fertility. However, it is still unclear how their application alone and in combination affect the soil organic carbon (C) fraction and microbial activity in subtropical bamboo plantations. Therefore, to investigate the effects of biochar and oyster shell powder on soil microbial respiration, organic C fractions, microbial biomass, and enzyme activities related to C, N and P cycling, topsoil samples were collected from plots in a bamboo (Phyllostachys praecox) plantation that has been amended with oyster shell powder at 4 t ha⁻¹ (T), bamboo biochar at 10 t ha⁻¹ (B), and their combination (TB, with 4 t ha⁻¹ T and 10 t ha⁻¹ B) for 8 months. Our results showed that T alone significantly increased soil microbial respiration by 21.5%, whereas B alone and TB significantly decreased soil microbial respiration and metabolic quotient compared with T. T alone also increased soil pH, the size of labile C pool and the activities of β−glucosidase and cellobiosidase, whereas TB rather than B increased soil pH, the recalcitrant C pool size and declined these enzyme activities relative to T. T alone significantly enhanced microbial C limitation by 28.6% and decreased P limitation by 13.0%, while TB decreased microbial C limitation and increased microbial C use efficiency (CUE). Structural equation modeling indicated that T enhanced soil microbial respiration through increasing soil pH and enzyme activity, while biochar co-addition weakened the stimulation of T on microbial respiration by increasing soil recalcitrant C pool size and microbial metabolic quotient. Our study suggests that adding bamboo biochar together with oyster shell powder could be a better strategy to decrease soil C loss and ameliorate soil acidity in bamboo plantations compared with the application of oyster shell powder alone.
    Keywords Phyllostachys violascens ; bamboos ; biochar ; carbon sinks ; enzyme activity ; enzymes ; equations ; microbial activity ; microbial biomass ; oyster shells ; soil fertility ; soil organic carbon ; soil pH ; stoichiometry ; topsoil
    Language English
    Dates of publication 2023-0421
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article ; Online
    ZDB-ID 2527081-3
    ISSN 1999-4907
    ISSN 1999-4907
    DOI 10.3390/f14040853
    Database NAL-Catalogue (AGRICOLA)

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  2. Book: Nei jing lei zheng

    Qin, Bowei

    (Xian dai zhu ming lao Zhong yi ming zhu chong kan cong shu.)

    2007  

    Author's details Qin Bowei zhu
    Series title Xian dai zhu ming lao Zhong yi ming zhu chong kan cong shu.
    MeSH term(s) Medicine, Chinese Traditional
    Language Chinese
    Size 3, 2, 2, 16, 77 p. ;, 20 cm.
    Edition Di 1 ban.
    Publisher Ren min wei sheng chu ban she
    Publishing place Beijing Shi
    Document type Book
    Note Reprint.
    ISBN 9787117085311 ; 7117085312
    Database Catalogue of the US National Library of Medicine (NLM)

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  3. Article ; Online: Feasibility of achieving two-electron K-O

    Qin, Lei / Ao, Huiling / Wu, Yiying

    Faraday discussions

    2024  Volume 248, Page(s) 60–74

    Abstract: A deep understanding of the oxygen ( ... ...

    Abstract A deep understanding of the oxygen (O
    Language English
    Publishing date 2024-01-29
    Publishing country England
    Document type Journal Article
    ISSN 1364-5498
    ISSN (online) 1364-5498
    DOI 10.1039/d3fd00085k
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Expression of CircSV2b in Parkinson's disease and its involvement in oxidative stress.

    Qin, Wang / Lei, Ming / Wu, Xiaobing

    Minerva medica

    2023  

    Language English
    Publishing date 2023-07-04
    Publishing country Italy
    Document type Journal Article
    ZDB-ID 123586-2
    ISSN 1827-1669 ; 0026-4806
    ISSN (online) 1827-1669
    ISSN 0026-4806
    DOI 10.23736/S0026-4806.23.08683-4
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Time-Saving 3D MR Imaging Protocols with Millimeter and Submillimeter Isotropic Spatial Resolution for Face and Neck Imaging as Implemented at a Single-Site Major Referral Center.

    Guenette, Jeffrey P / Qin, Lei

    AJNR. American journal of neuroradiology

    2024  

    Abstract: MR imaging has become the routine technique for staging nasopharyngeal carcinoma, evaluating perineural tumor spread, and detecting cartilage invasion in laryngeal carcinoma. However, these protocols traditionally require in the range of 25 to 35 minutes ...

    Abstract MR imaging has become the routine technique for staging nasopharyngeal carcinoma, evaluating perineural tumor spread, and detecting cartilage invasion in laryngeal carcinoma. However, these protocols traditionally require in the range of 25 to 35 minutes of acquisition time. 3D sequences offer the potential advantage of time savings through the acquisition of 1-mm or submillimeter resolution isotropic data followed by multiplanar reformats that require no further imaging time. We have iteratively optimized vendor product 3D T1-weighted MR imaging sequences for morphologic face and neck imaging, reducing the average acquisition time of our 3T protocols by 9 minutes 57 seconds (40.9%) and of our 1.5T protocols by 9 minutes 5 seconds (37.0%), while simultaneously maintaining or improving spatial resolution. This clinical report describes our experience optimizing and implementing commercially available 3D T1-weighted MR imaging pulse sequence protocols for clinical face and neck MR imaging examinations using illustrative cases. We provide protocol details to allow others to replicate our implementations, and we report challenges we faced along with our solutions.
    Language English
    Publishing date 2024-04-02
    Publishing country United States
    Document type Journal Article
    ZDB-ID 603808-6
    ISSN 1936-959X ; 0195-6108
    ISSN (online) 1936-959X
    ISSN 0195-6108
    DOI 10.3174/ajnr.A8184
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Time-Saving 3D MR Imaging Protocols with Millimeter and Submillimeter Isotropic Spatial Resolution for Face and Neck Imaging as Implemented at a Single-Site Major Referral Center.

    Guenette, Jeffrey P / Qin, Lei

    AJNR. American journal of neuroradiology

    2024  

    Abstract: MR imaging has become the routine technique for staging nasopharyngeal carcinoma, evaluating perineural tumor spread, and detecting cartilage invasion in laryngeal carcinoma. However, these protocols traditionally require in the range of 25 to 35 minutes ...

    Abstract MR imaging has become the routine technique for staging nasopharyngeal carcinoma, evaluating perineural tumor spread, and detecting cartilage invasion in laryngeal carcinoma. However, these protocols traditionally require in the range of 25 to 35 minutes of acquisition time. 3D sequences offer the potential advantage of time savings through the acquisition of 1-mm or submillimeter resolution isotropic data followed by multiplanar reformats that require no further imaging time. We have iteratively optimized vendor product 3D T1-weighted MR imaging sequences for morphologic face and neck imaging, reducing the average acquisition time of our 3T protocols by 9 minutes 57 seconds (40.9%) and of our 1.5T protocols by 9 minutes 5 seconds (37.0%), while simultaneously maintaining or improving spatial resolution. This clinical report describes our experience optimizing and implementing commercially available 3D T1-weighted MR imaging pulse sequence protocols for clinical face and neck MR imaging examinations using illustrative cases. We provide protocol details to allow others to replicate our implementations, and we report challenges we faced along with our solutions.
    Language English
    Publishing date 2024-03-29
    Publishing country United States
    Document type Journal Article
    ZDB-ID 603808-6
    ISSN 1936-959X ; 0195-6108
    ISSN (online) 1936-959X
    ISSN 0195-6108
    DOI 10.3174/ajnr.A8183
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: iPro2L-DG: Hybrid network based on improved densenet and global attention mechanism for identifying promoter sequences.

    Lei, Rufeng / Jia, Jianhua / Qin, Lulu / Wei, Xin

    Heliyon

    2024  Volume 10, Issue 6, Page(s) e27364

    Abstract: The promoter is a key DNA sequence whose primary function is to control the initiation time and the degree of expression of gene transcription. Accurate identification of promoters is essential for understanding gene expression studies. Traditional ... ...

    Abstract The promoter is a key DNA sequence whose primary function is to control the initiation time and the degree of expression of gene transcription. Accurate identification of promoters is essential for understanding gene expression studies. Traditional sequencing techniques for identifying promoters are costly and time-consuming. Therefore, the development of computational methods to identify promoters has become critical. Since deep learning methods show great potential in identifying promoters, this study proposes a new promoter prediction model, called iPro2L-DG. The iPro2L-DG predictor, based on an improved Densely Connected Convolutional Network (DenseNet) and a Global Attention Mechanism (GAM), is constructed to achieve the prediction of promoters. The promoter sequences are combined feature encoding using C2 encoding and nucleotide chemical property (NCP) encoding. An improved DenseNet extracts advanced feature information from the combined feature encoding. GAM evaluates the importance of advanced feature information in terms of channel and spatial dimensions, and finally uses a Full Connect Neural Network (FNN) to derive prediction probabilities. The experimental results showed that the accuracy of iPro2L-DG in the first layer (promoter identification) was 94.10% with Matthews correlation coefficient value of 0.8833. In the second layer (promoter strength prediction), the accuracy was 89.42% with Matthews correlation coefficient value of 0.7915. The iPro2L-DG predictor significantly outperforms other existing predictors in promoter identification and promoter strength prediction. Therefore, our proposed model iPro2L-DG is the most advanced promoter prediction tool. The source code of the iPro2L-DG model can be found in https://github.com/leirufeng/iPro2L-DG.
    Language English
    Publishing date 2024-03-06
    Publishing country England
    Document type Journal Article
    ZDB-ID 2835763-2
    ISSN 2405-8440
    ISSN 2405-8440
    DOI 10.1016/j.heliyon.2024.e27364
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: i5mC-DCGA: an improved hybrid network framework based on the CBAM attention mechanism for identifying promoter 5mC sites.

    Jia, Jianhua / Lei, Rufeng / Qin, Lulu / Wei, Xin

    BMC genomics

    2024  Volume 25, Issue 1, Page(s) 242

    Abstract: Background: 5-Methylcytosine (5mC) plays a very important role in gene stability, transcription, and development. Therefore, accurate identification of the 5mC site is of key importance in genetic and pathological studies. However, traditional ... ...

    Abstract Background: 5-Methylcytosine (5mC) plays a very important role in gene stability, transcription, and development. Therefore, accurate identification of the 5mC site is of key importance in genetic and pathological studies. However, traditional experimental methods for identifying 5mC sites are time-consuming and costly, so there is an urgent need to develop computational methods to automatically detect and identify these 5mC sites.
    Results: Deep learning methods have shown great potential in the field of 5mC sites, so we developed a deep learning combinatorial model called i5mC-DCGA. The model innovatively uses the Convolutional Block Attention Module (CBAM) to improve the Dense Convolutional Network (DenseNet), which is improved to extract advanced local feature information. Subsequently, we combined a Bidirectional Gated Recurrent Unit (BiGRU) and a Self-Attention mechanism to extract global feature information. Our model can learn feature representations of abstract and complex from simple sequence coding, while having the ability to solve the sample imbalance problem in benchmark datasets. The experimental results show that the i5mC-DCGA model achieves 97.02%, 96.52%, 96.58% and 85.58% in sensitivity (Sn), specificity (Sp), accuracy (Acc) and matthews correlation coefficient (MCC), respectively.
    Conclusions: The i5mC-DCGA model outperforms other existing prediction tools in predicting 5mC sites, and it is currently the most representative promoter 5mC site prediction tool. The benchmark dataset and source code for the i5mC-DCGA model can be found in https://github.com/leirufeng/i5mC-DCGA .
    MeSH term(s) 5-Methylcytosine ; Benchmarking ; Promoter Regions, Genetic ; Research Design ; Software
    Chemical Substances 5-Methylcytosine (6R795CQT4H)
    Language English
    Publishing date 2024-03-05
    Publishing country England
    Document type Journal Article
    ZDB-ID 2041499-7
    ISSN 1471-2164 ; 1471-2164
    ISSN (online) 1471-2164
    ISSN 1471-2164
    DOI 10.1186/s12864-024-10154-z
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Non-linear relationship between body roundness index and albuminuria among children and adolescents aged 8-19 years: A cross-sectional study.

    Qin, Xuankai / Wei, Jiahui / Chen, Jie / Lei, Fengying / Qin, Yuanhan

    PloS one

    2024  Volume 19, Issue 3, Page(s) e0299509

    Abstract: Introduction: Obesity has been found to be correlated with numerous health issues, including an elevated risk of albuminuria in adults. However, this correlation is still controversial among children and adolescents, as several recent large-scale cross- ... ...

    Abstract Introduction: Obesity has been found to be correlated with numerous health issues, including an elevated risk of albuminuria in adults. However, this correlation is still controversial among children and adolescents, as several recent large-scale cross-sectional studies have observed a negative correlation between obesity and albuminuria. Our study aimed to investigate the link between the body roundness index (BRI) and albuminuria among children and adolescents, in order to further understand the correlation between obesity and albuminuria in this demographic.
    Methods: We employed information from the National Health and Nutrition Examination Survey (NHANES) 1999-2010 for cross-sectional analysis. Weighted logistic regression was employed to explore the linear relationship between BRI and albuminuria, with subgroup analyses performed for more detailed insights. Weighted linear regression analysis was employed to explore the relationship between BRI and the urine albumin-creatinine ratio (UACR). Additionally, we applied smooth curve fitting to investigate their non-linear relationship and conducted threshold effect analysis to identify any turning point.
    Results: In this study of 15,487 participants aged 8-19 years, multivariate logistic regression analysis revealed a significant negative correlation between BRI and albuminuria (OR = 0.616, 95%CI: 0.526-0.722). The relationship between BRI and UACR, as shown by multivariate linear regression analysis, was significantly inversely correlated (β: -5.424, 95%CI: -7.416 to -3.433). Furthermore, smooth curve fitting and threshold effect analysis showed a non-linear relationship between BRI and albuminuria, with a BRI inflection point identified at 2.906.
    Conclusions: These findings of our study suggest a significant nonlinear negative association between BRI and the presence of albuminuria among children and teenagers, and maintaining an appropriate BRI may decrease the occurrence of albuminuria in this population.
    MeSH term(s) Adult ; Child ; Humans ; Adolescent ; Cross-Sectional Studies ; Nutrition Surveys ; Albuminuria/epidemiology ; Obesity/epidemiology ; Urinalysis ; Body Mass Index ; Risk Factors
    Language English
    Publishing date 2024-03-07
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2267670-3
    ISSN 1932-6203 ; 1932-6203
    ISSN (online) 1932-6203
    ISSN 1932-6203
    DOI 10.1371/journal.pone.0299509
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: [Retracted] Tanshinone IIA enhances the inhibitory effect of imatinib on proliferation and motility of acute leukemia cell line TIB‑152

    Teng, Zhi / Xu, Shijuan / Lei, Qin

    Oncology reports

    2024  Volume 51, Issue 5

    Abstract: Following the publication of the above article, a concerned reader drew to the Editor's attention that the Transwell cell invasion assay data featured in Figs. 2D and 4E, certain of the tumor images in Fig. 5A and the TUNEL assay data in Fig. 5C were ... ...

    Abstract Following the publication of the above article, a concerned reader drew to the Editor's attention that the Transwell cell invasion assay data featured in Figs. 2D and 4E, certain of the tumor images in Fig. 5A and the TUNEL assay data in Fig. 5C were strikingly similar to data appearing in different form in other articles written by different authors at different research institutes that had either already been published elsewhere prior to the submission of this paper to
    Language English
    Publishing date 2024-03-15
    Publishing country Greece
    Document type Retraction of Publication
    ZDB-ID 1222484-4
    ISSN 1791-2431 ; 1021-335X
    ISSN (online) 1791-2431
    ISSN 1021-335X
    DOI 10.3892/or.2024.8725
    Database MEDical Literature Analysis and Retrieval System OnLINE

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