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  1. Article ; Online: Nek2A prevents centrosome clustering and induces cell death in cancer cells via KIF2C interaction.

    Kalkan, Batuhan Mert / Ozcan, Selahattin Can / Cicek, Enes / Gonen, Mehmet / Acilan, Ceyda

    Cell death & disease

    2024  Volume 15, Issue 3, Page(s) 222

    Abstract: Unlike normal cells, cancer cells frequently exhibit supernumerary centrosomes, leading to formation of multipolar spindles that can trigger cell death. Nevertheless, cancer cells with supernumerary centrosomes escape the deadly consequences of unequal ... ...

    Abstract Unlike normal cells, cancer cells frequently exhibit supernumerary centrosomes, leading to formation of multipolar spindles that can trigger cell death. Nevertheless, cancer cells with supernumerary centrosomes escape the deadly consequences of unequal segregation of genomic material by coalescing their centrosomes into two poles. This unique trait of cancer cells presents a promising target for cancer therapy, focusing on selectively attacking cells with supernumerary centrosomes. Nek2A is a kinase involved in mitotic regulation, including the centrosome cycle, where it phosphorylates linker proteins to separate centrosomes. In this study, we investigated if Nek2A also prevents clustering of supernumerary centrosomes, akin to its separation function. Reduction of Nek2A activity, achieved through knockout, silencing, or inhibition, promotes centrosome clustering, whereas its overexpression results in inhibition of clustering. Significantly, prevention of centrosome clustering induces cell death, but only in cancer cells with supernumerary centrosomes, both in vitro and in vivo. Notably, none of the known centrosomal (e.g., CNAP1, Rootletin, Gas2L1) or non-centrosomal (e.g., TRF1, HEC1) Nek2A targets were implicated in this machinery. Additionally, Nek2A operated via a pathway distinct from other proteins involved in centrosome clustering mechanisms, like HSET and NuMA. Through TurboID proximity labeling analysis, we identified novel proteins associated with the centrosome or microtubules, expanding the known interaction partners of Nek2A. KIF2C, in particular, emerged as a novel interactor, confirmed through coimmunoprecipitation and localization analysis. The silencing of KIF2C diminished the impact of Nek2A on centrosome clustering and rescued cell viability. Additionally, elevated Nek2A levels were indicative of better patient outcomes, specifically in those predicted to have excess centrosomes. Therefore, while Nek2A is a proposed target, its use must be specifically adapted to the broader cellular context, especially considering centrosome amplification. Discovering partners such as KIF2C offers fresh insights into cancer biology and new possibilities for targeted treatment.
    MeSH term(s) Humans ; Cell Cycle ; Cell Death ; Centrosome/metabolism ; Cluster Analysis ; Kinesins/genetics ; Kinesins/metabolism ; Microtubules/metabolism ; Mitosis ; Neoplasms/genetics ; Neoplasms/metabolism ; Spindle Apparatus/metabolism
    Chemical Substances KIF2C protein, human ; Kinesins (EC 3.6.4.4) ; NEK2 protein, human (EC 2.7.11.1)
    Language English
    Publishing date 2024-03-16
    Publishing country England
    Document type Journal Article
    ZDB-ID 2541626-1
    ISSN 2041-4889 ; 2041-4889
    ISSN (online) 2041-4889
    ISSN 2041-4889
    DOI 10.1038/s41419-024-06601-0
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: The Association between Serum 25-Hydroxyvitamin D3 Levels and Pro-Inflammatory Markers in New-Onset Type 2 Diabetes Mellitus and Prediabetes.

    Fenercioglu, Aysen Kutan / Gonen, Mustafa Sait / Uzun, Hafize / Sipahioglu, Nurver Turfaner / Can, Gunay / Tas, Ebru / Kara, Zehra / Ozkaya, Hande Mefkure / Atukeren, Pinar

    Biomolecules

    2023  Volume 13, Issue 12

    Abstract: In this study, we aimed to reveal the pro-inflammatory effects of serum 25-hydroxyvitamin D3 (Vit D) deficiency and insufficiency in new-onset type 2 diabetes mellitus (T2DM) and prediabetes. We recruited 84 prediabetes patients, 94 new-onset T2DM ... ...

    Abstract In this study, we aimed to reveal the pro-inflammatory effects of serum 25-hydroxyvitamin D3 (Vit D) deficiency and insufficiency in new-onset type 2 diabetes mellitus (T2DM) and prediabetes. We recruited 84 prediabetes patients, 94 new-onset T2DM patients and 113 healthy participants. We measured the levels of C-reactive protein (CRP), fibrinogen, ferritin, interleukin-1β (IL-1β), interleukin-6 (IL-6), interleukin-8 (IL-8), tumor necrosis factor-α (TNF-α), nuclear factor kappa-B (NF-κB) and mitogen-activated protein kinase (MAPK) in the serum of the participants. ANOVA Bonferroni and Kruskal-Wallis Dunn tests were used to compare the inflammation markers and vitamin D levels between the groups. Based on covariance analysis with age, gender and BMI, the Vit D levels of the T2DM group were significantly lower (
    MeSH term(s) Humans ; Diabetes Mellitus, Type 2/metabolism ; Prediabetic State ; Calcifediol ; Interleukin-8 ; Tumor Necrosis Factor-alpha ; Interleukin-6 ; NF-kappa B ; Vitamin D ; C-Reactive Protein ; Mitogen-Activated Protein Kinases ; Vitamins
    Chemical Substances Calcifediol (P6YZ13C99Q) ; Interleukin-8 ; Tumor Necrosis Factor-alpha ; Interleukin-6 ; NF-kappa B ; Vitamin D (1406-16-2) ; C-Reactive Protein (9007-41-4) ; Mitogen-Activated Protein Kinases (EC 2.7.11.24) ; Vitamins
    Language English
    Publishing date 2023-12-12
    Publishing country Switzerland
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2701262-1
    ISSN 2218-273X ; 2218-273X
    ISSN (online) 2218-273X
    ISSN 2218-273X
    DOI 10.3390/biom13121778
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Factors affecting medical students' satisfaction with online learning: a regression analysis of a survey.

    Çakmakkaya, Özlem Serpil / Meydanlı, Elif Güzel / Kafadar, Ali Metin / Demirci, Mehmet Selman / Süzer, Öner / Ar, Muhlis Cem / Yaman, Muhittin Onur / Demirbaş, Kaan Can / Gönen, Mustafa Sait

    BMC medical education

    2024  Volume 24, Issue 1, Page(s) 11

    Abstract: Background: Medical education requires the implementation of different teaching methods and strategies for future doctors to achieve broad learning objectives. This wide range of methods and strategies includes the use of Information Technologies. For a ...

    Abstract Background: Medical education requires the implementation of different teaching methods and strategies for future doctors to achieve broad learning objectives. This wide range of methods and strategies includes the use of Information Technologies. For a long time, there was a call for a change in medical education for blending new teaching approaches to lessen medical students' class time. The COVID-19 pandemic then sped up the transition to the new way of medical education and classroom lectures were quickly moved to a virtual environment. We expect that these changes will continue, and online learning will be one of the main teaching strategies in medical education. Therefore, educational experiences during the COVID-19 pandemic will improve our understanding of online learning and will help to develop blended medical school curricula in the future. For this reason, we aimed to determine students' overall satisfaction with their online learning experience and to define the main factors affecting students' satisfaction with their online learning program at Cerrahpaşa Medical Faculty.
    Methods: A cross-sectional survey study was conducted to determine medical students' overall satisfaction with online learning methods and to identify factors associated with positive and negative satisfaction levels. A questionnaire, consisting of 24 questions to collect demographic characteristics, factors associated with online education experience and overall satisfaction levels was developed and distributed to 1600 medical students. Multivariable linear regression analysis was used to determine the factors associated with positive and negative satisfaction levels.
    Results: Regression analysis showed that being familiar with online teaching techniques (β = 0.19, 95% CI [0.07, 0.30], faculty members' higher online teaching skill levels (β = 0.42, 95% CI [0.32, 0.51], interactive online teaching approaches (β = 0.54, 95% CI [0.41, 0.67], having a personal workspace (β = 0.43, 95% CI [0.19, 0.67], and a self-reported longer attention span (β = 0.75, 95% CI [0.57, 0.92] were associated with higher overall satisfaction with online learning. The occurrence of technical problems (β = -0.19, 95% CI [-0.26, -0.12] was associated with lower overall satisfaction.
    Conclusions: Higher online teaching skills of faculty members, use of interactive approaches, students' familiarity with online teaching techniques, provision of a personal workspace, and self-reported longer attention spans positively contributed to higher levels of student satisfaction with online learning. Considering the increasing significance of online educational methods, our study identified key components that affect students' level of satisfaction. This information might contribute to the development of online educational programs in the future.
    MeSH term(s) Humans ; Education, Distance/methods ; Students, Medical ; Pandemics ; Cross-Sectional Studies ; Personal Satisfaction ; Surveys and Questionnaires ; COVID-19/epidemiology ; Regression Analysis
    Language English
    Publishing date 2024-01-03
    Publishing country England
    Document type Journal Article
    ZDB-ID 2044473-4
    ISSN 1472-6920 ; 1472-6920
    ISSN (online) 1472-6920
    ISSN 1472-6920
    DOI 10.1186/s12909-023-04995-7
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: A rare cause of rectal bleeding.

    Aslan, Ekrem / Gonen, Can

    Acta gastro-enterologica Belgica

    2018  Volume 81, Issue 2, Page(s) 350

    MeSH term(s) Aged ; Female ; Gastrointestinal Hemorrhage/diagnosis ; Gastrointestinal Hemorrhage/surgery ; Humans ; Melanoma/diagnosis ; Melanoma/surgery ; Rectal Neoplasms/diagnosis ; Rectal Neoplasms/surgery ; Sigmoidoscopy
    Language English
    Publishing date 2018-07-19
    Publishing country Belgium
    Document type Case Reports ; Journal Article
    ZDB-ID 127060-6
    ISSN 1784-3227 ; 0001-5644
    ISSN 1784-3227 ; 0001-5644
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Factors affecting medical students’ satisfaction with online learning

    Özlem Serpil Çakmakkaya / Elif Güzel Meydanlı / Ali Metin Kafadar / Mehmet Selman Demirci / Öner Süzer / Muhlis Cem Ar / Muhittin Onur Yaman / Kaan Can Demirbaş / Mustafa Sait Gönen

    BMC Medical Education, Vol 24, Iss 1, Pp 1-

    a regression analysis of a survey

    2024  Volume 10

    Abstract: Abstract Background Medical education requires the implementation of different teaching methods and strategies for future doctors to achieve broad learning objectives. This wide range of methods and strategies includes the use of Information Technologies. ...

    Abstract Abstract Background Medical education requires the implementation of different teaching methods and strategies for future doctors to achieve broad learning objectives. This wide range of methods and strategies includes the use of Information Technologies. For a long time, there was a call for a change in medical education for blending new teaching approaches to lessen medical students’ class time. The COVID-19 pandemic then sped up the transition to the new way of medical education and classroom lectures were quickly moved to a virtual environment. We expect that these changes will continue, and online learning will be one of the main teaching strategies in medical education. Therefore, educational experiences during the COVID-19 pandemic will improve our understanding of online learning and will help to develop blended medical school curricula in the future. For this reason, we aimed to determine students’ overall satisfaction with their online learning experience and to define the main factors affecting students’ satisfaction with their online learning program at Cerrahpaşa Medical Faculty. Methods A cross-sectional survey study was conducted to determine medical students’ overall satisfaction with online learning methods and to identify factors associated with positive and negative satisfaction levels. A questionnaire, consisting of 24 questions to collect demographic characteristics, factors associated with online education experience and overall satisfaction levels was developed and distributed to 1600 medical students. Multivariable linear regression analysis was used to determine the factors associated with positive and negative satisfaction levels. Results Regression analysis showed that being familiar with online teaching techniques (β = 0.19, 95% CI [0.07, 0.30], faculty members’ higher online teaching skill levels (β = 0.42, 95% CI [0.32, 0.51], interactive online teaching approaches (β = 0.54, 95% CI [0.41, 0.67], having a personal workspace (β = 0.43, 95% CI [0.19, 0.67], and a self-reported longer ...
    Keywords Medical education ; Online learning ; Students’ satisfaction ; Linear regression analysis ; Special aspects of education ; LC8-6691 ; Medicine ; R
    Subject code 370
    Language English
    Publishing date 2024-01-01T00:00:00Z
    Publisher BMC
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  6. Article ; Online: Elimination of healthcare-associated Acinetobacter baumannii infection in a highly endemic region.

    Ergonul, Onder / Tokca, Gizem / Keske, Şiran / Donmez, Ebru / Madran, Bahar / Kömür, Azize / Gönen, Mehmet / Can, Fusun

    International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases

    2021  Volume 114, Page(s) 11–14

    Abstract: This paper describes the elimination of healthcare-associated Acinetobacter baumannii infections in a highly endemic region. A prospective, observational study was performed between October 2012 and October 2017. Acinetobacter baumannii were isolated ... ...

    Abstract This paper describes the elimination of healthcare-associated Acinetobacter baumannii infections in a highly endemic region. A prospective, observational study was performed between October 2012 and October 2017. Acinetobacter baumannii were isolated from 59 patients, and >95% similarity was demonstrated among isolates of seven patients (DiversiLab™, BioMérieux). Carbapenemase activity was detected in 15 of 17 (88%) isolates, and all were OXA-23 type. The control of Acinetobacter baumannii outbreaks can be achieved by close follow-up supported by molecular techniques, strict application of infection control measures, and isolation of transferred patients.
    MeSH term(s) Acinetobacter Infections/drug therapy ; Acinetobacter Infections/epidemiology ; Acinetobacter Infections/prevention & control ; Adult ; Aged ; Aged, 80 and over ; Anti-Bacterial Agents/pharmacology ; Anti-Bacterial Agents/therapeutic use ; Bacterial Proteins ; Cross Infection/epidemiology ; Cross Infection/prevention & control ; Female ; Humans ; Male ; Microbial Sensitivity Tests ; Middle Aged ; Prospective Studies ; Turkey ; beta-Lactamases/genetics
    Chemical Substances Anti-Bacterial Agents ; Bacterial Proteins ; beta-Lactamases (EC 3.5.2.6)
    Language English
    Publishing date 2021-10-12
    Publishing country Canada
    Document type Journal Article ; Observational Study
    ZDB-ID 1331197-9
    ISSN 1878-3511 ; 1201-9712
    ISSN (online) 1878-3511
    ISSN 1201-9712
    DOI 10.1016/j.ijid.2021.10.011
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Gastric Subepithelial Mass-like Involvement in Crohn's Disease: Another Upper Gastrointestinal Manifestation?

    Gonen, Can / Ozkara, Selvinaz

    Journal of Crohn's & colitis

    2017  Volume 12, Issue 2, Page(s) 262–263

    MeSH term(s) Crohn Disease/complications ; Crohn Disease/diagnostic imaging ; Crohn Disease/pathology ; Endoscopy ; Female ; Humans ; Middle Aged ; Stomach Diseases/diagnostic imaging ; Stomach Diseases/etiology ; Stomach Diseases/pathology
    Language English
    Publishing date 2017-09-19
    Publishing country England
    Document type Case Reports ; Journal Article
    ZDB-ID 2390120-2
    ISSN 1876-4479 ; 1873-9946
    ISSN (online) 1876-4479
    ISSN 1873-9946
    DOI 10.1093/ecco-jcc/jjx127
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: A meta-analysis for the role of aminoglycosides and tigecyclines in combined regimens against colistin- and carbapenem-resistant Klebsiella pneumoniae bloodstream infections.

    Demirlenk, Yusuf Mert / Gücer, Lal Sude / Uçku, Duygu / Tanrıöver, Cem / Akyol, Merve / Kalay, Zeynepgül / Barçın, Erinç / Akcan, Rüştü Emre / Can, Füsun / Gönen, Mehmet / Ergönül, Önder

    European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology

    2022  Volume 41, Issue 5, Page(s) 761–769

    Abstract: We aimed to describe the effect of aminoglycosides and tigecycline to reduce the mortality in colistin- and carbapenem-resistant Klebsiella pneumoniae (ColR-CR-Kp) infections. We included the studies with defined outcomes after active or non-active ... ...

    Abstract We aimed to describe the effect of aminoglycosides and tigecycline to reduce the mortality in colistin- and carbapenem-resistant Klebsiella pneumoniae (ColR-CR-Kp) infections. We included the studies with defined outcomes after active or non-active antibiotic treatment of ColR-CR-Kp infections. The active treatment was defined as adequate antibiotic use for at least 3 days (72 h) after the diagnosis of ColR-CR-Kp infection by culture. The Preferred Reporting Items for Systematic Reviews and Meta-Analysis (PRISMA) statement and the checklist of PRISMA 2020 was applied. Crude and adjusted odds ratios (OR) with 95% confidence interval (CI) were calculated and pooled in the random effects model. Adding aminoglycosides to the existing treatment regimen reduced overall mortality significantly (OR 0.34, 95% CI 0.20-0.58). Overall mortality was 34% in patients treated with aminoglycoside-combined regimens and was 60% in patients treated with non-aminoglycoside regimens. Treatment with tigecycline is not found to reduce mortality (OR: 0.76, 95% CI: 0.47-1.23). Our results suggest that aminoglycoside addition to the existing regimen of colistin- and carbapenem-resistant Klebsiella pneumoniae infections reduces mortality significantly.
    MeSH term(s) Aminoglycosides/pharmacology ; Aminoglycosides/therapeutic use ; Anti-Bacterial Agents/pharmacology ; Anti-Bacterial Agents/therapeutic use ; Carbapenem-Resistant Enterobacteriaceae ; Carbapenems/pharmacology ; Carbapenems/therapeutic use ; Colistin/pharmacology ; Colistin/therapeutic use ; Humans ; Klebsiella Infections/microbiology ; Klebsiella pneumoniae ; Microbial Sensitivity Tests ; Sepsis/drug therapy ; Tigecycline/pharmacology ; Tigecycline/therapeutic use
    Chemical Substances Aminoglycosides ; Anti-Bacterial Agents ; Carbapenems ; Tigecycline (70JE2N95KR) ; Colistin (Z67X93HJG1)
    Language English
    Publishing date 2022-03-18
    Publishing country Germany
    Document type Journal Article ; Meta-Analysis
    ZDB-ID 603155-9
    ISSN 1435-4373 ; 0934-9723 ; 0722-2211
    ISSN (online) 1435-4373
    ISSN 0934-9723 ; 0722-2211
    DOI 10.1007/s10096-022-04429-0
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: The value of adenosine deaminase level in assessing activation of inflammatory bowel disease

    Züleyha Akkan Çetinkaya / Yasemin Gökden / Semih Kalyon / Semih Hot / Can Gönen

    Journal of Surgery and Medicine, Vol 4, Iss 8, Pp 654-

    2020  Volume 659

    Abstract: Aim: There is still a need for an ideal laboratory test that can determine the type of disease, the degree of its activity, predict its course, and monitor treatment response in patients with inflammatory bowel disease (IBD). This study aims to ... ...

    Abstract Aim: There is still a need for an ideal laboratory test that can determine the type of disease, the degree of its activity, predict its course, and monitor treatment response in patients with inflammatory bowel disease (IBD). This study aims to investigate the relationship between disease types and activity with Adenosine deaminase (ADA) levels in patients with IBD. Methods: A total of 92 patients with IBD [43 with Crohn’s disease (CD) and 49 with ulcerative colitis (UC)] and 31 healthy control (HC) volunteers were included in this case-control study. Patients’ age, gender, body mass index, location and severity of the disease, medication, endoscopic examination, hemogram, C-reactive Protein (CRP), and ADA results were evaluated. Results: The mean ADA level was 24.87 (9.6 - 74.9) IU/L in the IBD group and 20.8 (13.7 - 38.9) IU/L in the HC group. The difference between the IBD and HC groups was statistically significant (P
    Keywords ulcerative colitis ; crohn’s disease ; adenosine deaminase ; crohn hastalığı ; ülseratif kolit ; adenozin deaminaz ; Medicine ; R ; Medicine (General) ; R5-920 ; Surgery ; RD1-811
    Subject code 610
    Language English
    Publishing date 2020-08-01T00:00:00Z
    Publisher Journal of Surgery and Medicine
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  10. Article ; Online: Promoters of Colistin Resistance in

    Nurtop, Elif / Bayındır Bilman, Fulya / Menekse, Sirin / Kurt Azap, Ozlem / Gönen, Mehmet / Ergonul, Onder / Can, Fusun

    Microbial drug resistance (Larchmont, N.Y.)

    2019  Volume 25, Issue 7, Page(s) 997–1002

    Abstract: Objectives: ...

    Abstract Objectives:
    MeSH term(s) Acinetobacter Infections/drug therapy ; Acinetobacter Infections/microbiology ; Acinetobacter baumannii/drug effects ; Acinetobacter baumannii/genetics ; Adult ; Aged ; Aged, 80 and over ; Anti-Bacterial Agents/pharmacology ; Bacterial Proteins/genetics ; Colistin/pharmacology ; Drug Resistance, Bacterial/drug effects ; Drug Resistance, Bacterial/genetics ; Female ; Humans ; Male ; Microbial Sensitivity Tests/methods ; Middle Aged ; Mutation/genetics ; Promoter Regions, Genetic/genetics ; Transcription Factors/genetics ; beta-Lactamases/genetics
    Chemical Substances Anti-Bacterial Agents ; Bacterial Proteins ; Transcription Factors ; beta-Lactamases (EC 3.5.2.6) ; carbapenemase (EC 3.5.2.6) ; Colistin (Z67X93HJG1)
    Language English
    Publishing date 2019-04-09
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1290490-9
    ISSN 1931-8448 ; 1076-6294
    ISSN (online) 1931-8448
    ISSN 1076-6294
    DOI 10.1089/mdr.2018.0396
    Database MEDical Literature Analysis and Retrieval System OnLINE

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