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  1. Article: Bicyclic (alkyl)(amino)carbene (BICAAC) in a dual role: activation of primary amides and CO

    Gautam, Nimisha / Logdi, Ratan / P, Sreejyothi / Roy, Antara / Tiwari, Ashwani K / Mandal, Swadhin K

    Chemical science

    2023  Volume 14, Issue 19, Page(s) 5079–5086

    Abstract: Herein, we report the first catalytic methylation of primary amides using ... ...

    Abstract Herein, we report the first catalytic methylation of primary amides using CO
    Language English
    Publishing date 2023-04-20
    Publishing country England
    Document type Journal Article
    ZDB-ID 2559110-1
    ISSN 2041-6539 ; 2041-6520
    ISSN (online) 2041-6539
    ISSN 2041-6520
    DOI 10.1039/d3sc01216f
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: 3D-Printed Impedance Micropump for Continuous Perfusion of the Sample and Nutrient Medium Integrated with a Liver-On-Chip Prototype.

    Dhwaj, Amar / Roy, Nimisha / Jaiswar, Ankur / Prabhakar, Amit / Verma, Deepti

    ACS omega

    2022  Volume 7, Issue 45, Page(s) 40900–40910

    Abstract: In recent decades, organ-on-chip devices have gained substantial interest as an alternative for studying the pathophysiological processes relevant to drug screening. Micropumps are being utilized to simulate the in vivo physiological fluid flow more ... ...

    Abstract In recent decades, organ-on-chip devices have gained substantial interest as an alternative for studying the pathophysiological processes relevant to drug screening. Micropumps are being utilized to simulate the in vivo physiological fluid flow more realistically in these organ-on-chip devices. Micropumps play a crucial role in pumping, perfusion, and circulation of fluids in various microdevices such as on-chip PCR, DNA microarrays, miniature bioreactor cell separation, and lab-on-chip biosensing platforms. With the rapid growth in technology, efficient pumping for proper circulation of media and nutrients has become imperative. In this study, we have described the design and development of an open-source impedance micropump for continuous perfusion of nutrient medium in a liver-on-chip prototype. This micropump is controlled via an integrated microcontroller board, with an observed flow rate ranging from 0.2 to 2 mL/min. Google Sketchup 2020 and DLP 3D printing were used to fabricate small precise parts of the impedance micropump. The flow rate was measured to characterize the actuating performance of the micropump. The poly-dimethyl siloxane-based liver-on-chip prototype has been fabricated using a soft photolithography procedure. Further, a study of continuous perfusion of culture medium through the liver-on-chip containing the Hepg2 cell line was successfully performed by integrating it with the impedance micropump. Hoechst staining and Alamar Blue observed cell viability to confirm the healthy cell growth inside the liver-on-chip microfluidic chip. The compactness of the overall setup allows it to fit in a Petri plate, eliminating chances of contamination while cell handling.
    Language English
    Publishing date 2022-11-04
    Publishing country United States
    Document type Journal Article
    ISSN 2470-1343
    ISSN (online) 2470-1343
    DOI 10.1021/acsomega.2c03818
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Invasive oral squamous cell carcinoma of maxillary alveolus in a Nicobari tribal woman after 17 years of tobacco cessation - A case report.

    Sivanandan, Nimisha / Nagarajan, Muruganandam / Roy, Avijit / Subramaniam, Ashok / Ramasamy, Jawahar / Parthasarathy, Shailaja / Parvez, Rehnuma

    Oral oncology

    2021  Volume 123, Page(s) 105601

    MeSH term(s) Carcinoma, Squamous Cell/pathology ; Head and Neck Neoplasms ; Humans ; Mouth Neoplasms/etiology ; Mouth Neoplasms/pathology ; Squamous Cell Carcinoma of Head and Neck ; Tobacco Use Cessation ; Tobacco, Smokeless
    Language English
    Publishing date 2021-11-09
    Publishing country England
    Document type Case Reports ; Letter ; Research Support, Non-U.S. Gov't
    ZDB-ID 1120465-5
    ISSN 1879-0593 ; 0964-1955 ; 1368-8375
    ISSN (online) 1879-0593
    ISSN 0964-1955 ; 1368-8375
    DOI 10.1016/j.oraloncology.2021.105601
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: 3D image scanning of gravel soil using in-situ X-ray computed tomography.

    Matsumura, Satoshi / Kondo, Akihiko / Nakamura, Keita / Mizutani, Takaaki / Kohama, Eiji / Wada, Kenji / Kobayashi, Taizo / Roy, Nimisha / Frost, J David

    Scientific reports

    2023  Volume 13, Issue 1, Page(s) 20007

    Abstract: A typical ground investigation for characterizing geotechnical properties of soil requires sampling soils to test in a laboratory. Laboratory X-ray computed tomography (CT) has been used to non-destructively observe soils and characterize their ... ...

    Abstract A typical ground investigation for characterizing geotechnical properties of soil requires sampling soils to test in a laboratory. Laboratory X-ray computed tomography (CT) has been used to non-destructively observe soils and characterize their properties using image processing, numerical analysis, or three-dimensional (3D) printing techniques based on scanned images; however, if it becomes possible to scan the soils in the ground, it may enable the characterization without sampling them. In this study, an in-situ X-ray CT scanning system comprising a drilling machine with an integrated CT scanner was developed. A model test was conducted on gravel soil to verify if the equipment can drill and scan the soil underground. Moreover, image processing was performed on acquired 3D CT images to verify the image quality; the particle morphology (particle size and shape characteristics) was compared with the results obtained for projected particles captured in a two-dimensional (2D) manner by a digital camera. The equipment successfully drilled to a target depth of 800 mm, and the soil was scanned at depths of 700, 750, and 800 mm. Image processing results showed a reasonable agreement between the 3D and 2D particle morphology images, and confirmed the feasibility of the in-situ X-ray CT scanning system.
    Language English
    Publishing date 2023-11-16
    Publishing country England
    Document type Journal Article
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-023-46772-y
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: A simple cost-effective microfluidic platform for rapid synthesis of diverse metal nanoparticles: A novel approach towards fighting SARS-CoV-2.

    Prabhakar, Amit / Bansal, Ishita / Jaiswar, Ankur / Roy, Nimisha / Verma, Deepti

    Materials today. Proceedings

    2021  Volume 80, Page(s) 1852–1857

    Abstract: The latest addition to the family of Coronaviruses, SARS-CoV-2, unleashed its wrath across the globe. The outbreak has been so rapid and widespread that even the most developed countries are still struggling with ways to contain the spread of the virus. ... ...

    Abstract The latest addition to the family of Coronaviruses, SARS-CoV-2, unleashed its wrath across the globe. The outbreak has been so rapid and widespread that even the most developed countries are still struggling with ways to contain the spread of the virus. The virus began spreading from Wuhan in China in December 2019 and has currently affected more than200 countries worldwide. Nanotechnology has huge potential for killing viruses as severe as HIV, herpes, human papilloma virus, and viruses of the respiratory tract, both inside as well as outside the host. Metal-nanoparticles can be employed for biosensing methodology of viruses/bacteria, along with the development of novel drugs and vaccines for COVID-19 and future pandemics. It is thus required for the nanoparticles to be synthesized quickly along with precise control over their size distribution. In this study, we propose a simple microfluidic-reactor-platform for in-situ metal-nanoparticle synthesis to be used against the pandemic for the development of preventive, diagnostic, and antiviral drug therapies. The device has been fabricated using a customized standard photolithography process using a simple and cost-effective setup. The confirmation on standard silver and gold metal nanoparticle formation in the microfluidic reactor platform was analysed using optical fiber spectrophotometer. This novel microfluidic platform provides the advantage of in-situ synthesis, flow parameter control and reduced agglomeration of nanoparticles over the bulk synthesis due to segregation of nucleation and growth stages inside a microchannel. The results are highly reproducible and hence scaling up of the nanoparticle production is possible without involving complex instrumentation.
    Language English
    Publishing date 2021-06-14
    Publishing country England
    Document type Journal Article
    ZDB-ID 2797693-2
    ISSN 2214-7853
    ISSN 2214-7853
    DOI 10.1016/j.matpr.2021.05.624
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Cost-effective smart microfluidic device with immobilized silver nanoparticles and embedded UV-light sources for synergistic water disinfection effects.

    Prabhakar, Amit / Agrawal, Mehul / Mishra, Neha / Roy, Nimisha / Jaiswar, Ankur / Dhwaj, Amar / Verma, Deepti

    RSC advances

    2020  Volume 10, Issue 30, Page(s) 17479–17485

    Abstract: A novel microfluidic-device for water ... ...

    Abstract A novel microfluidic-device for water disinfection
    Language English
    Publishing date 2020-05-05
    Publishing country England
    Document type Journal Article
    ISSN 2046-2069
    ISSN (online) 2046-2069
    DOI 10.1039/d0ra00076k
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: VISGRADER: Automatic Grading of D3 Visualizations.

    Hull, Matthew / Pednekar, Vivian / Murray, Hannah / Roy, Nimisha / Tung, Emmanuel / Routray, Susanta / Guerin, Connor / Chen, Justin / Wang, Zijie J / Lee, Seongmin / Roozbahani, Mahdi / Chau, Duen Horng

    IEEE transactions on visualization and computer graphics

    2023  Volume PP

    Abstract: Manually grading D3 data visualizations is a challenging endeavor, and is especially difficult for large classes with hundreds of students. Grading an interactive visualization requires a combination of interactive, quantitative, and qualitative ... ...

    Abstract Manually grading D3 data visualizations is a challenging endeavor, and is especially difficult for large classes with hundreds of students. Grading an interactive visualization requires a combination of interactive, quantitative, and qualitative evaluation that are conventionally done manually and are difficult to scale up as the visualization complexity, data size, and number of students increase. We present VISGRADER, a first-of-its kind automatic grading method for D3 visualizations that scalably and precisely evaluates the data bindings, visual encodings, interactions, and design specifications used in a visualization. Our method enhances students' learning experience, enabling them to submit their code frequently and receive rapid feedback to better inform iteration and improvement to their code and visualization design. We have successfully deployed our method and auto-graded D3 submissions from more than 4000 students in a visualization course at Georgia Tech, and received positive feedback for expanding its adoption.
    Language English
    Publishing date 2023-10-26
    Publishing country United States
    Document type Journal Article
    ISSN 1941-0506
    ISSN (online) 1941-0506
    DOI 10.1109/TVCG.2023.3327181
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article: Deciphering the Novel Target Genes Involved in the Epigenetics of Hepatocellular Carcinoma Using Graph Theory Approach.

    Roy, Nimisha / Raj, Utkarsh / Rai, Sneha / Varadwaj, Pritish K

    Current genomics

    2020  Volume 20, Issue 8, Page(s) 545–555

    Abstract: Background: Even after decades of research, cancer, by and large, remains a challenge and is one of the major causes of death worldwide. For a very long time, it was believed that cancer is simply an outcome of changes at the genetic level but today, it ...

    Abstract Background: Even after decades of research, cancer, by and large, remains a challenge and is one of the major causes of death worldwide. For a very long time, it was believed that cancer is simply an outcome of changes at the genetic level but today, it has become a well-established fact that both genetics and epigenetics work together resulting in the transformation of normal cells to cancerous cells.
    Objective: In the present scenario, researchers are focusing on targeting epigenetic machinery. The main advantage of targeting epigenetic mechanisms is their reversibility. Thus, cells can be reprogrammed to their normal state. Graph theory is a powerful gift of mathematics which allows us to understand complex networks.
    Methodology: In this study, graph theory was utilized for quantitative analysis of the epigenetic network of hepato-cellular carcinoma (HCC) and subsequently finding out the important vertices in the network thus obtained. Secondly, this network was utilized to locate novel targets for hepato-cellular carcinoma epigenetic therapy.
    Results: The vertices represent the genes involved in the epigenetic mechanism of HCC. Topological parameters like clustering coefficient, eccentricity, degree,
    Conclusion: The top ten novel epigenetic target genes involved in HCC reported in this study are cdk6, cdk4, cdkn2a, smad7, smad3, ccnd1, e2f1, sf3b1, ctnnb1, and tgfb1.
    Language English
    Publishing date 2020-06-11
    Publishing country United Arab Emirates
    Document type Journal Article
    ZDB-ID 2033677-9
    ISSN 1875-5488 ; 1389-2029
    ISSN (online) 1875-5488
    ISSN 1389-2029
    DOI 10.2174/1389202921666191227100441
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Respiratory viruses among ethnic Nicobarese during COVID-19 pandemic.

    Muruganandam, Nagarajan / Roy, Avijit / Sivanandan, Nimisha / Vins, Alwin / Beniwal, Nisha / Kaur, Harpreet / Potdar, Varsha / Parvez, Rehnuma

    BMC infectious diseases

    2022  Volume 22, Issue 1, Page(s) 463

    Abstract: Background: Acute respiratory infections (ARIs) and severe acute respiratory illness (SARI) are public health burdens globally. The percentage of non-SARS CoV-2 respiratory viruses among patients having ARI and SARI who visit Car Nicobar's hospital ... ...

    Abstract Background: Acute respiratory infections (ARIs) and severe acute respiratory illness (SARI) are public health burdens globally. The percentage of non-SARS CoV-2 respiratory viruses among patients having ARI and SARI who visit Car Nicobar's hospital settings is undocumented. Changes in the epidemiology of other respiratory viruses during COVID19 pandemic is being reported worldwide.
    Methods: Inpatient and outpatient settings at BJR hospital, Car Nicobar Island, India, were used to conduct prospective monitoring for ARI and SARI among Nicobarese tribal members. The patients with ARI and SARI were enlisted in BJR hospital from June 2019 to May 2021. At the ICMR-NIV in Pune, duplex RT-PCR assays were used to test the presence of respiratory viruses. The prevalence of non- SARS CoV-2 respiratory viruses was measured by comparing here between pandemic and pre-pandemic periods.
    Results: During the COVID19 pandemic, Influenza A (H3N2) and rhinovirus were predominantly reported non-SARS CoV-2 respiratory viruses while Human metapneumovirusand influenza A (H1N1)pdm09were most commonly reported in the prepandemic period. This result indicates the altered circulation of non-SARS CoV-2 during pandemic.
    Conclusions: A considerable proportion of respiratory infection was correlated with respiratory viruses. Prevalence of non-SARS CoV-2 respiratory viruses was high at the time of infection when compared with pre-pandemic period, at Car Nicobar Island. This study enlightened the change in circulation of other respiratory viruses among the indigenous Nicobarese tribes. Clinicians and allied medical staff should be more prudent of these respiratory infections.
    MeSH term(s) COVID-19/epidemiology ; Humans ; India/epidemiology ; Influenza A Virus, H1N1 Subtype ; Influenza A Virus, H3N2 Subtype ; Influenza, Human/epidemiology ; Pandemics ; Prospective Studies ; Respiratory Tract Infections/epidemiology ; SARS-CoV-2
    Language English
    Publishing date 2022-05-14
    Publishing country England
    Document type Journal Article
    ZDB-ID 2041550-3
    ISSN 1471-2334 ; 1471-2334
    ISSN (online) 1471-2334
    ISSN 1471-2334
    DOI 10.1186/s12879-022-07435-x
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Tear biomarkers in dry eye disease: Progress in the last decade.

    Kumar, Nimisha R / Praveen, Machiraju / Narasimhan, Raghav / Khamar, Pooja / D'Souza, Sharon / Sinha-Roy, Abhijit / Sethu, Swaminathan / Shetty, Rohit / Ghosh, Arkasubhra

    Indian journal of ophthalmology

    2023  Volume 71, Issue 4, Page(s) 1190–1202

    Abstract: Dry eye disease (DED) is a commonly occurring, multifactorial disease characterized by reduced tear film stability and hyperosmolarity at the ocular surface, leading to discomfort and visual compromise. DED is driven by chronic inflammation and its ... ...

    Abstract Dry eye disease (DED) is a commonly occurring, multifactorial disease characterized by reduced tear film stability and hyperosmolarity at the ocular surface, leading to discomfort and visual compromise. DED is driven by chronic inflammation and its pathogenesis involves multiple ocular surface structures such as the cornea, conjunctiva, lacrimal glands, and meibomian glands. The tear film secretion and its composition are regulated by the ocular surface in orchestration with the environment and bodily cues. Thus, any dysregulation in ocular surface homeostasis causes an increase in tear break-up time (TBUT), osmolarity changes, and reduction in tear film volume, all of which are indicators of DED. Tear film abnormalities are perpetuated by underlying inflammatory signaling and secretion of inflammatory factors, leading to the recruitment of immune cells and clinical pathology. Tear-soluble factors such as cytokines and chemokines are the best surrogate markers of disease severity and can also drive the altered profile of ocular surface cells contributing to the disease. Soluble factors can thus help in disease classification and planning treatment strategies. Our analysis suggests increased levels of cytokines namely interleukin-1β (IL-1β), IL-2, IL-4, IL-6, IL-9, IL-12, IL-17A, interferon-gamma (IFN-γ), tumor necrosis factor-alpha (TNF-α); chemokines (CCL2, CCL3, CCL4, CXCL8); MMP-9, FGF, VEGF-A; soluble receptors (sICAM-1, sTNFR1), neurotrophic factors (NGF, substance P, serotonin) and IL1RA and reduced levels of IL-7, IL-17F, CXCL1, CXCL10, EGF and lactoferrin in DED. Due to the non-invasive sample collection and ease of quantitively measuring soluble factors, tears are one of the best-studied biological samples to molecularly stratify DED patients and monitor their response to therapy. In this review, we evaluate and summarize the soluble factors profiles in DED patients from the studies conducted over the past decade and across various patient groups and etiologies. The use of biomarker testing in clinical settings will aid in the advancement of personalized medicine and represents the next step in managing DED.
    MeSH term(s) Humans ; Dry Eye Syndromes/etiology ; Tears/chemistry ; Cytokines ; Chemokines/analysis ; Chemokines/therapeutic use ; Biomarkers ; Lacrimal Apparatus
    Chemical Substances Cytokines ; Chemokines ; Biomarkers
    Language English
    Publishing date 2023-03-09
    Publishing country India
    Document type Journal Article ; Review
    ZDB-ID 187392-1
    ISSN 1998-3689 ; 0301-4738
    ISSN (online) 1998-3689
    ISSN 0301-4738
    DOI 10.4103/IJO.IJO_2981_22
    Database MEDical Literature Analysis and Retrieval System OnLINE

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