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  1. Article: Drug resistant

    Schami, Alyssa / Islam, M Nurul / Wall, Matthew / Hicks, Amberlee / Meredith, Reagan / Kreiswirth, Barry / Mathema, Barun / Belisle, John T / Torrelles, Jordi B

    bioRxiv : the preprint server for biology

    2024  

    Abstract: Mycobacterium tuberculosis (M.tb) ...

    Abstract Mycobacterium tuberculosis (M.tb)
    Language English
    Publishing date 2024-04-11
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2024.04.10.588986
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Drug-resistant strains of

    Schami, Alyssa / Islam, M Nurul / Belisle, John T / Torrelles, Jordi B

    Frontiers in cellular and infection microbiology

    2023  Volume 13, Page(s) 1274175

    Abstract: In the past few decades, drug-resistant (DR) strains ... ...

    Abstract In the past few decades, drug-resistant (DR) strains of
    MeSH term(s) Humans ; Mycobacterium tuberculosis/genetics ; Antitubercular Agents/pharmacology ; Antitubercular Agents/therapeutic use ; Tuberculosis/drug therapy ; Tuberculosis/microbiology ; Tuberculosis, Multidrug-Resistant/drug therapy ; Tuberculosis, Multidrug-Resistant/microbiology ; Global Health ; Drug Resistance, Multiple, Bacterial
    Chemical Substances Antitubercular Agents
    Language English
    Publishing date 2023-10-27
    Publishing country Switzerland
    Document type Journal Article ; Review ; Research Support, Non-U.S. Gov't ; Research Support, N.I.H., Extramural
    ZDB-ID 2619676-1
    ISSN 2235-2988 ; 2235-2988
    ISSN (online) 2235-2988
    ISSN 2235-2988
    DOI 10.3389/fcimb.2023.1274175
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Correction: An immunoinformatics and extended molecular dynamics approach for designing a polyvalent vaccine against multiple strains of Human T-lymphotropic virus (HTLV).

    Moin, Abu Tayab / Rani, Nurul Amin / Ullah, Md Asad / Patil, Rajesh B / Robin, Tanjin Barketullah / Nawal, Nafisa / Zubair, Talha / Mahamud, Syed Iftakhar / Sakib, Mohammad Najmul / Islam, Nafisa Nawal / Khaleque, Md Abdul / Absar, Nurul / Shohael, Abdullah Mohammad

    PloS one

    2023  Volume 18, Issue 12, Page(s) e0295830

    Abstract: This corrects the article DOI: 10.1371/journal.pone.0287416.]. ...

    Abstract [This corrects the article DOI: 10.1371/journal.pone.0287416.].
    Language English
    Publishing date 2023-12-08
    Publishing country United States
    Document type Published Erratum
    ZDB-ID 2267670-3
    ISSN 1932-6203 ; 1932-6203
    ISSN (online) 1932-6203
    ISSN 1932-6203
    DOI 10.1371/journal.pone.0295830
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: In-silico formulation of a next-generation polyvalent vaccine against multiple strains of monkeypox virus and other related poxviruses.

    Moin, Abu Tayab / Rani, Nurul Amin / Patil, Rajesh B / Robin, Tanjin Barketullah / Ullah, Md Asad / Rahim, Zahidur / Rahman, Md Foyzur / Zubair, Talha / Hossain, Mohabbat / Mollah, A K M Moniruzzaman / Absar, Nurul / Hossain, Mahboob / Manchur, Mohammed Abul / Islam, Nazneen Naher

    PloS one

    2024  Volume 19, Issue 5, Page(s) e0300778

    Abstract: ... to epitope mapping for vaccine construction. Two vaccines were constructed using selected T cell epitopes and B cell ...

    Abstract Mpox (formerly known as monkeypox) virus and some related poxviruses including smallpox virus pose a significant threat to public health, and effective prevention and treatment strategies are needed. This study utilized a reverse vaccinology approach to retrieve conserved epitopes for monkeypox virus and construct a vaccine that could provide cross-protection against related viruses with similar antigenic properties. The selected virulent proteins of monkeypox virus, MPXVgp165, and Virion core protein P4a, were subjected to epitope mapping for vaccine construction. Two vaccines were constructed using selected T cell epitopes and B cell epitopes with PADRE and human beta-defensins adjuvants conjugated in the vaccine sequence. Both constructs were found to be highly antigenic, non-allergenic, nontoxic, and soluble, suggesting their potential to generate an adequate immune response and be safe for humans. Vaccine construct 1 was selected for molecular dynamic simulation studies. The simulation studies revealed that the TLR8-vaccine complex was more stable than the TLR3-vaccine complex. The lower RMSD and RMSF values of the TLR8 bound vaccine compared to the TLR3 bound vaccine suggested better stability and consistency of hydrogen bonds. The Rg values of the vaccine chain bound to TLR8 indicated overall stability, whereas the vaccine chain bound to TLR3 showed deviations throughout the simulation. These results suggest that the constructed vaccine could be a potential preventive measure against monkeypox and related viruses however, further experimental validation is required to confirm these findings.
    MeSH term(s) Humans ; Monkeypox virus/immunology ; Molecular Dynamics Simulation ; Epitopes, T-Lymphocyte/immunology ; Epitopes, T-Lymphocyte/chemistry ; Epitopes, B-Lymphocyte/immunology ; Epitopes, B-Lymphocyte/chemistry ; Computer Simulation ; Poxviridae/immunology ; Viral Vaccines/immunology ; Epitope Mapping ; Mpox (monkeypox)/prevention & control ; Mpox (monkeypox)/immunology ; Animals ; Toll-Like Receptor 8/immunology
    Language English
    Publishing date 2024-05-17
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2267670-3
    ISSN 1932-6203 ; 1932-6203
    ISSN (online) 1932-6203
    ISSN 1932-6203
    DOI 10.1371/journal.pone.0300778
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: An immunoinformatics and extended molecular dynamics approach for designing a polyvalent vaccine against multiple strains of Human T-lymphotropic virus (HTLV).

    Moin, Abu Tayab / Rani, Nurul Amin / Ullah, Md Asad / Patil, Rajesh B / Robin, Tanjin Barketullah / Nawal, Nafisa / Zubair, Talha / Mahamud, Syed Iftakhar / Sakib, Mohammad Najmul / Islam, Nafisa Nawal / Khaleque, Md Abdul / Absar, Nurul / Shohael, Abdullah Mohammad

    PloS one

    2023  Volume 18, Issue 9, Page(s) e0287416

    Abstract: Human T-lymphotropic virus (HTLV), a group of retroviruses belonging to the oncovirus family, has ... Epitope mapping identified T cell and B cell epitopes with low binding energies, ensuring their immunogenicity and ...

    Abstract Human T-lymphotropic virus (HTLV), a group of retroviruses belonging to the oncovirus family, has long been associated with various inflammatory and immunosuppressive disorders. At present, there is no approved vaccine capable of effectively combating all the highly pathogenic strains of HTLV that makes this group of viruses a potential threat to human health. To combat the devastating impact of any potential future outbreak caused by this virus group, our study employed a reverse vaccinology approach to design a novel polyvalent vaccine targeting the highly virulent subtypes of HTLV. Moreover, we comprehensively analyzed the molecular interactions between the designed vaccine and corresponding Toll-like receptors (TLRs), providing valuable insights for future research on preventing and managing HTLV-related diseases and any possible outbreaks. The vaccine was designed by focusing on the envelope glycoprotein gp62, a crucial protein involved in the infectious process and immune mechanisms of HTLV inside the human body. Epitope mapping identified T cell and B cell epitopes with low binding energies, ensuring their immunogenicity and safety. Linkers and adjuvants were incorporated to enhance the vaccine's stability, antigenicity, and immunogenicity. Initially, two vaccine constructs were formulated, and among them, vaccine construct-2 exhibited superior solubility and structural stability. Molecular docking analyses also revealed strong binding affinity between the vaccine construct-2 and both targeted TLR2 and TLR4. Molecular dynamics simulations demonstrated enhanced stability, compactness, and consistent hydrogen bonding within TLR-vaccine complexes, suggesting a strong binding affinity. The stability of the complexes was further corroborated by contact, free energy, structure, and MM-PBSA analyses. Consequently, our research proposes a vaccine targeting multiple HTLV subtypes, offering valuable insights into the molecular interactions between the vaccine and TLRs. These findings should contribute to developing effective preventive and treatment approaches against HTLV-related diseases and preventing possible outbreaks. However, future research should focus on in-depth validation through experimental studies to confirm the interactions identified in silico and to evaluate the vaccine's efficacy in relevant animal models and, eventually, in clinical trials.
    MeSH term(s) Humans ; Animals ; Vaccines, Combined ; Molecular Dynamics Simulation ; Molecular Docking Simulation ; Retroviridae ; Sprains and Strains
    Chemical Substances Vaccines, Combined
    Language English
    Publishing date 2023-09-08
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2267670-3
    ISSN 1932-6203 ; 1932-6203
    ISSN (online) 1932-6203
    ISSN 1932-6203
    DOI 10.1371/journal.pone.0287416
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: Introduction to the Mymaridae (Hymenoptera) of Bangladesh.

    Huber, John T / Islam, Nurul

    ZooKeys

    2017  , Issue 675, Page(s) 75–96

    Abstract: An identification key to the 15 genera of Mymaridae found so far in Bangladesh is given, based on about 520 specimens collected using yellow pan traps placed in agricultural habitats and at the edge of ponds, mainly at Bangabandhu Sheikh Mujibur Rahman ... ...

    Abstract An identification key to the 15 genera of Mymaridae found so far in Bangladesh is given, based on about 520 specimens collected using yellow pan traps placed in agricultural habitats and at the edge of ponds, mainly at Bangabandhu Sheikh Mujibur Rahman Agricultural University, Gazipur. Species already reported from Bangladesh are listed and three more are added:
    Language English
    Publishing date 2017-05-22
    Publishing country Bulgaria
    Document type Journal Article
    ZDB-ID 2445640-8
    ISSN 1313-2970 ; 1313-2989
    ISSN (online) 1313-2970
    ISSN 1313-2989
    DOI 10.3897/zookeys.675.12713
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Introduction to the Mymaridae (Hymenoptera) of Bangladesh

    John T. Huber / Nurul Islam

    ZooKeys, Vol 675, Iss , Pp 75-

    2017  Volume 96

    Abstract: An identification key to the 15 genera of Mymaridae found so far in Bangladesh is given, based on about 520 specimens collected using yellow pan traps placed in agricultural habitats and at the edge of ponds, mainly at Bangabandhu Sheikh Mujibur Rahman ... ...

    Abstract An identification key to the 15 genera of Mymaridae found so far in Bangladesh is given, based on about 520 specimens collected using yellow pan traps placed in agricultural habitats and at the edge of ponds, mainly at Bangabandhu Sheikh Mujibur Rahman Agricultural University, Gazipur. Species already reported from Bangladesh are listed and three more are added: Acmopolynema orientale (Narayanan, Subba Rao & Kaur), Himopolynema hishimonus Taguchi, and Mymar pulchellum Curtis.
    Keywords Zoology ; QL1-991
    Language English
    Publishing date 2017-05-01T00:00:00Z
    Publisher Pensoft Publishers
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  8. Article ; Online: Biomarker selection and a prospective metabolite-based machine learning diagnostic for lyme disease.

    Kehoe, Eric R / Fitzgerald, Bryna L / Graham, Barbara / Islam, M Nurul / Sharma, Kartikay / Wormser, Gary P / Belisle, John T / Kirby, Michael J

    Scientific reports

    2022  Volume 12, Issue 1, Page(s) 1478

    Abstract: We provide a pipeline for data preprocessing, biomarker selection, and classification of liquid chromatography-mass spectrometry (LCMS) serum samples to generate a prospective diagnostic test for Lyme disease. We utilize tools of machine learning (ML), e. ...

    Abstract We provide a pipeline for data preprocessing, biomarker selection, and classification of liquid chromatography-mass spectrometry (LCMS) serum samples to generate a prospective diagnostic test for Lyme disease. We utilize tools of machine learning (ML), e.g., sparse support vector machines (SSVM), iterative feature removal (IFR), and k-fold feature ranking to select several biomarkers and build a discriminant model for Lyme disease. We report a 98.13% test balanced success rate (BSR) of our model based on a sequestered test set of LCMS serum samples. The methodology employed is general and can be readily adapted to other LCMS, or metabolomics, data sets.
    MeSH term(s) Biomarkers/blood ; Biomarkers/metabolism ; Case-Control Studies ; Chromatography, High Pressure Liquid/methods ; Datasets as Topic ; Healthy Volunteers ; Humans ; Lyme Disease/blood ; Lyme Disease/diagnosis ; Mass Spectrometry/methods ; Metabolomics/methods ; Support Vector Machine
    Chemical Substances Biomarkers
    Language English
    Publishing date 2022-01-27
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-022-05451-0
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article: Introduction to the Mymaridae (Hymenoptera) of Bangladesh

    Huber, John T / Islam, Nurul

    ZooKeys. 2017 May 22, v. 675

    2017  

    Abstract: An identification key to the 15 genera of Mymaridae found so far in Bangladesh is given, based on about 520 specimens collected using yellow pan traps placed in agricultural habitats and at the edge of ponds, mainly at Bangabandhu Sheikh Mujibur Rahman ... ...

    Abstract An identification key to the 15 genera of Mymaridae found so far in Bangladesh is given, based on about 520 specimens collected using yellow pan traps placed in agricultural habitats and at the edge of ponds, mainly at Bangabandhu Sheikh Mujibur Rahman Agricultural University, Gazipur. Species already reported from Bangladesh are listed and three more are added: Acmopolynema orientale (Narayanan, Subba Rao & Kaur), Himopolynema hishimonus Taguchi, and Mymar pulchellum Curtis.
    Keywords Mymaridae ; agricultural colleges ; taxonomic keys ; Bangladesh
    Language English
    Dates of publication 2017-0522
    Size p. 75-96.
    Publishing place Pensoft Publishers
    Document type Article
    Note NAL-light
    ZDB-ID 2445640-8
    ISSN 1313-2970 ; 1313-2989
    ISSN (online) 1313-2970
    ISSN 1313-2989
    DOI 10.3897/zookeys.675.12713
    Database NAL-Catalogue (AGRICOLA)

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  10. Article ; Online: 2,4-Dipropylphloroglucinol inhibits the growth of human lung and colorectal cancer cells through induction of apoptosis.

    Kabir, Syed Rashel / Islam, Tofazzal / Mollah, Md Nurul Haque

    Medical oncology (Northwood, London, England)

    2023  Volume 40, Issue 5, Page(s) 129

    Abstract: Scientists are finding the most effective chemotherapeutic agents for the treatment of cancer. In the present study, we evaluated the anticancer mechanism of DPPG, a derivative of DAPG (2,4-diacetylphloroglucinol), for the first time. DPPG and DAPG ... ...

    Abstract Scientists are finding the most effective chemotherapeutic agents for the treatment of cancer. In the present study, we evaluated the anticancer mechanism of DPPG, a derivative of DAPG (2,4-diacetylphloroglucinol), for the first time. DPPG and DAPG inhibited 83 and 59% of human colorectal cancer HCT116 cell growth at 40.0 µg/ml, and 74 and 57% of human lung cancer A549 cell growth at 10.0 µg/ml concentrations respectively. Furthermore, DPPG and DAPG inhibited 97 and 73% colony formation of the HCT116 cells at 20.0 µg/ml concentration. DPPG and DAPG induced apoptosis in the HCT116 and A549 cells that was confirmed by Hoechst 33342 and FITC-annexin V staining. This result also revealed that ROS generated in both the HCT116 and A549 cells after treatment with DPPG. However, no ROS production was observed in HCT116 and A549 cells after treatment with DAPG. Both DAPG and DPPG significantly increased the CASP3 protein expression that was detected by staining the cells with the super-view 488-CASP3 substrate. Expression of WNT1 gene was eliminated in DPPG and DAPG treated HCT116. Expression of MAPK1 gene was entirely abolished in DPPG treated cells, whereas a significant decrease was observed for DAPG. An intense band of CASP8 gene product was observed agarose gel for DPPG treated HCT116 cells than DAPG. Molecular docking simulation showed the high binding affinities (≥ 6.5 kcal/mol) of DPPG and DAPG with target proteins WNT1, MAPK1, CASP8, and CASP3 in HCT116 cells. This manuscript demonstrated that DAPG and DPPG inhibited lung and colorectal cancer cells by inducing apoptosis. DAPG and DPPG inhibited A549 and HCT116 cells growth by inducing apoptosis.
    MeSH term(s) Humans ; Cell Line, Tumor ; Caspase 3 ; Molecular Docking Simulation ; Apoptosis ; Cell Proliferation ; Lung ; Colorectal Neoplasms/drug therapy ; Colorectal Neoplasms/metabolism ; HCT116 Cells
    Chemical Substances Caspase 3 (EC 3.4.22.-)
    Language English
    Publishing date 2023-03-24
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1201189-7
    ISSN 1559-131X ; 0736-0118 ; 1357-0560
    ISSN (online) 1559-131X
    ISSN 0736-0118 ; 1357-0560
    DOI 10.1007/s12032-023-01986-y
    Database MEDical Literature Analysis and Retrieval System OnLINE

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